Rh1CG022200

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0002545
Physical Location & Seq
Forward (+)
3849925 .. 3930283
80359 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG022200.1

Sequence Viewer

Length: 900 bp
ATGGGGATGATCTCAAGGCAAGTTTTCCCTGTTTGTGAAAGCCTCTGCTTCTTTTGTCCTGCATTGCGTGCCAGATCACGCCATCCCGTCAAGCGTTACAAGAAGTTGCTCGCCGAGATTTTTCCTCGCTCTCCGGATGAAGAACCAAATGACCGCAAGATCAGTAAACTATGTGAATATGCCTCAAAAACTCCTCTCCGTATTCCAAAGACCACATCTACTCTGGAGCAAAGATGTTACAAGGACTTGAGAACTGAGAACTTCCACTCTGTGAAAGTGGTCATGTGTATCTACCGGAAGTTGTTGATTTCTTGTAAGGATCAAATGCCATTGTTTGCAAGTAGTCTACTTAGCATTGCTCAAATTCTGCTTGATCAAACACGACATGATGAAATACGTATTTTAGGATGCCAAACTCTTTTCGACTTTGTGAATAATCAGAAGGATGGTACATATTTGTTTAACTTAGACAGCATGATTCCAAAACTTTGTCAAATAGCTCAAGAAATGAGGGAGGATGGGACAGCAATGAATTTGCGGGCAGCTGGGCTTCAAGCTCTTTCATCAATGAATGGTCCTGGAATAACAAAGTCATACTTTCAGGAAGTGAAGGAGGATATGCACAACCCTGGATTTTGGTCAAGGGTTTGCCTTCATAACATTGCCAAGTTAGCCAAGGAAGCTACAACTGTTCGGAGGGTTTTGGAATCTTTGTTCAGATATTTTGATAATGGCAATCTCTGGTCTCCTAAACATGGGCTTGCTCTGTCTGTCTTGATGAATAATGCAGTTGATCCATTTCTACGGTTAGTTGATGACTCCAAGTTACAGGCTGTCGAATCTAGCCCTGACCAACCAAGGAAAGTTTATGGATCAAAAGAAGATGATCAGGATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

299

Amino Acids

34.21

Weight (kDa)

8.84

Isoelectric Point (pI)

48.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EFR3_ARM PF21052 65 - 159 1.7e-16 EFR3, armadillo repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 346
AccIII TCCGGA 1 cut(s) 133
AciI CCGC 2 cut(s) 154, 538
AclWI GGATC 3 cut(s) 327, 788, 880
AcsI RAATTY 2 cut(s) 363, 532
AdeI CACNNNGTG 1 cut(s) 271
AfaI GTAC 1 cut(s) 451
AfiI CCNNNNNNNGG 1 cut(s) 755
AgsI TTSAA 1 cut(s) 554
AjnI CCWGG 2 cut(s) 577, 628
AloI GAACNNNNNNTCC 2 cut(s) 698, 730
AluBI AGCT 4 cut(s) 500, 545, 557, 683
AluI AGCT 4 cut(s) 500, 545, 557, 683
Alw26I GTCTC 1 cut(s) 750
AlwI GGATC 3 cut(s) 327, 788, 880
Aor13HI TCCGGA 1 cut(s) 133
ApeKI GCWGC 1 cut(s) 542
ApoI RAATTY 2 cut(s) 363, 532
AspS9I GGNCC 1 cut(s) 575
AvaII GGWCC 1 cut(s) 575
BbvI GCAGC 1 cut(s) 554
BccI CCATC 3 cut(s) 90, 440, 512
BciT130I CCWGG 2 cut(s) 579, 630
BclI TGATCA 2 cut(s) 373, 886
BcoDI GTCTC 1 cut(s) 750
BfaI CTAG 1 cut(s) 843
BisI GCNGC 1 cut(s) 543
BlsI GCNGC 1 cut(s) 544
Bme1390I CCNGG 2 cut(s) 579, 630
Bme18I GGWCC 1 cut(s) 575
BmgT120I GGNCC 1 cut(s) 575
BmrFI CCNGG 2 cut(s) 579, 630
BmsI GCATC 2 cut(s) 398, 883
BpmI CTGGAG 1 cut(s) 245
BpuEI CTTGAG 2 cut(s) 268, 486
BsaAI YACGTR 1 cut(s) 398
BsaI GGTCTC 1 cut(s) 750
BsaJI CCNNGG 3 cut(s) 628, 675, 857
BsaWI WCCGGW 2 cut(s) 133, 294
Bsc4I CCNNNNNNNGG 1 cut(s) 755
Bse3DI GCAATG 4 cut(s) 62, 354, 534, 660
BseAI TCCGGA 1 cut(s) 133
BseBI CCWGG 2 cut(s) 579, 630
BseDI CCNNGG 3 cut(s) 628, 675, 857
BseGI GGATG 7 cut(s) 12, 82, 142, 413, 451, 523, 898
BseLI CCNNNNNNNGG 1 cut(s) 755
BseMI GCAATG 4 cut(s) 62, 354, 534, 660
BseMII CTCAG 1 cut(s) 246
BseRI GAGGAG 1 cut(s) 183
BseXI GCAGC 1 cut(s) 554
BseYI CCCAGC 1 cut(s) 545
BsiSI CCGG 2 cut(s) 134, 295
BslFI GGGAC 1 cut(s) 535
BslI CCNNNNNNNGG 1 cut(s) 755
BsmAI GTCTC 1 cut(s) 750
BsmFI GGGAC 1 cut(s) 535
Bso31I GGTCTC 1 cut(s) 750
Bsp13I TCCGGA 1 cut(s) 133
Bsp143I GATC 8 cut(s) 9, 74, 159, 319, 373, 793, 872, 886
BspACI CCGC 2 cut(s) 154, 538
BspCNI CTCAG 1 cut(s) 247
BspEI TCCGGA 1 cut(s) 133
BspPI GGATC 3 cut(s) 327, 788, 880
BspTNI GGTCTC 1 cut(s) 750
BsrDI GCAATG 4 cut(s) 62, 354, 534, 660
BssECI CCNNGG 3 cut(s) 628, 675, 857
BssMI GATC 8 cut(s) 9, 74, 159, 319, 373, 793, 872, 886
BssT1I CCWWGG 2 cut(s) 675, 857
Bst2UI CCWGG 2 cut(s) 579, 630
Bst4CI ACNGT 2 cut(s) 691, 807
BstAPI GCANNNNNTGC 1 cut(s) 68
BstBAI YACGTR 1 cut(s) 398
BstC8I GCNNGC 4 cut(s) 69, 111, 540, 762
BstDEI CTNAG 3 cut(s) 255, 350, 466
BstF5I GGATG 7 cut(s) 12, 82, 142, 413, 451, 523, 898
BstKTI GATC 8 cut(s) 12, 77, 162, 322, 376, 796, 875, 889
BstMAI GTCTC 1 cut(s) 750
BstMBI GATC 8 cut(s) 9, 74, 159, 319, 373, 793, 872, 886
BstMWI GCNNNNNNNGC 3 cut(s) 68, 671, 680
BstNI CCWGG 2 cut(s) 579, 630
BstSCI CCNGG 2 cut(s) 577, 628
BstSNI TACGTA 1 cut(s) 398
BstV1I GCAGC 1 cut(s) 554
BtsCI GGATG 7 cut(s) 12, 82, 142, 413, 451, 523, 898
Cac8I GCNNGC 4 cut(s) 69, 111, 540, 762
Cfr13I GGNCC 1 cut(s) 575
Csp6I GTAC 1 cut(s) 450
CviAII CATG 4 cut(s) 283, 386, 475, 755
CviQI GTAC 1 cut(s) 450
DdeI CTNAG 3 cut(s) 255, 350, 466
DpnI GATC 8 cut(s) 11, 76, 161, 321, 375, 795, 874, 888
DpnII GATC 8 cut(s) 9, 74, 159, 319, 373, 793, 872, 886
DraIII CACNNNGTG 1 cut(s) 271
Eco105I TACGTA 1 cut(s) 398
Eco130I CCWWGG 2 cut(s) 675, 857
Eco31I GGTCTC 1 cut(s) 750
Eco47I GGWCC 1 cut(s) 575
EcoRII CCWGG 2 cut(s) 577, 628
EcoT14I CCWWGG 2 cut(s) 675, 857
ErhI CCWWGG 2 cut(s) 675, 857
FaeI CATG 4 cut(s) 286, 389, 478, 758
FalI AAGNNNNNCTT 2 cut(s) 581, 613
FaqI GGGAC 1 cut(s) 535
FatI CATG 4 cut(s) 282, 385, 474, 754
FauI CCCGC 1 cut(s) 531
FbaI TGATCA 2 cut(s) 373, 886
FblI GTMKAC 1 cut(s) 346
Fnu4HI GCNGC 1 cut(s) 543
FokI GGATG 6 cut(s) 19, 69, 149, 420, 458, 530
Fsp4HI GCNGC 1 cut(s) 543
FspBI CTAG 1 cut(s) 843
GluI GCNGC 1 cut(s) 543
GsaI CCCAGC 1 cut(s) 549
GsuI CTGGAG 1 cut(s) 245
HapII CCGG 2 cut(s) 134, 295
Hin1II CATG 4 cut(s) 286, 389, 478, 758
HinfI GANTC 4 cut(s) 478, 707, 818, 839
HpaII CCGG 2 cut(s) 134, 295
Hpy166II GTNNAC 2 cut(s) 167, 347
Hpy188I TCNGA 3 cut(s) 441, 696, 719
Hpy188III TCNNGA 6 cut(s) 134, 224, 503, 602, 775, 890
Hpy8I GTNNAC 2 cut(s) 167, 347
HpyAV CCTTC 3 cut(s) 436, 604, 662
HpyCH4III ACNGT 2 cut(s) 691, 807
HpyCH4IV ACGT 1 cut(s) 397
HpyCH4V TGCA 4 cut(s) 62, 338, 622, 788
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 671, 680
HpyF3I CTNAG 3 cut(s) 255, 350, 466
HpySE526I ACGT 1 cut(s) 397
Hsp92II CATG 4 cut(s) 286, 389, 478, 758
Kpn2I TCCGGA 1 cut(s) 133
Ksp22I TGATCA 2 cut(s) 373, 886
Kzo9I GATC 8 cut(s) 9, 74, 159, 319, 373, 793, 872, 886
LmnI GCTCC 1 cut(s) 226
Lsp1109I GCAGC 1 cut(s) 554
LweI GCATC 2 cut(s) 398, 883
MaeI CTAG 1 cut(s) 843
MaeII ACGT 1 cut(s) 397
MaeIII GTNAC 3 cut(s) 95, 236, 825
MalI GATC 8 cut(s) 11, 76, 161, 321, 375, 795, 874, 888
MboI GATC 8 cut(s) 9, 74, 159, 319, 373, 793, 872, 886
MboII GAAGA 2 cut(s) 152, 893
MluCI AATT 2 cut(s) 363, 532
MlyI GAGTC 1 cut(s) 812
MnlI CCTC 8 cut(s) 53, 135, 193, 204, 504, 508, 607, 690
MroI TCCGGA 1 cut(s) 133
MseI TTAA 1 cut(s) 462
MspA1I CMGCKG 1 cut(s) 545
MspI CCGG 2 cut(s) 134, 295
MspR9I CCNGG 2 cut(s) 579, 630
MvaI CCWGG 2 cut(s) 579, 630
MwoI GCNNNNNNNGC 3 cut(s) 68, 671, 680
NdeII GATC 8 cut(s) 9, 74, 159, 319, 373, 793, 872, 886
NlaIII CATG 4 cut(s) 286, 389, 478, 758
NmeAIII GCCGAG 1 cut(s) 139
PfeI GAWTC 3 cut(s) 478, 707, 839
PfoI TCCNGGA 1 cut(s) 577
PkrI GCNGC 1 cut(s) 544
PleI GAGTC 1 cut(s) 812
PpsI GAGTC 1 cut(s) 812
Ppu21I YACGTR 1 cut(s) 398
Psp6I CCWGG 2 cut(s) 577, 628
PspFI CCCAGC 1 cut(s) 545
PspGI CCWGG 2 cut(s) 577, 628
PspPI GGNCC 1 cut(s) 575
PvuII CAGCTG 1 cut(s) 545
RsaI GTAC 1 cut(s) 451
RsaNI GTAC 1 cut(s) 450
SaqAI TTAA 1 cut(s) 462
SatI GCNGC 1 cut(s) 543
Sau3AI GATC 8 cut(s) 9, 74, 159, 319, 373, 793, 872, 886
Sau96I GGNCC 1 cut(s) 575
SchI GAGTC 1 cut(s) 812
ScrFI CCNGG 2 cut(s) 579, 630
SetI ASST 5 cut(s) 400, 502, 547, 559, 685
SfaNI GCATC 2 cut(s) 398, 883
SinI GGWCC 1 cut(s) 575
SmlI CTYRAG 3 cut(s) 13, 247, 501
SmoI CTYRAG 3 cut(s) 13, 247, 501
SnaBI TACGTA 1 cut(s) 398
Sse9I AATT 2 cut(s) 363, 532
SsiI CCGC 2 cut(s) 154, 538
SspMI CTAG 1 cut(s) 843
StyD4I CCNGG 2 cut(s) 577, 628
StyI CCWWGG 2 cut(s) 675, 857
TaaI ACNGT 2 cut(s) 691, 807
TaiI ACGT 1 cut(s) 400
TaqI TCGA 2 cut(s) 423, 837
TasI AATT 2 cut(s) 363, 532
TfiI GAWTC 3 cut(s) 478, 707, 839
Tru1I TTAA 1 cut(s) 462
Tru9I TTAA 1 cut(s) 462
TseI GCWGC 1 cut(s) 542
TspDTI ATGAA 7 cut(s) 153, 405, 545, 552, 584, 644, 794
TspGWI ACGGA 1 cut(s) 188
VpaK11BI GGWCC 1 cut(s) 575
XapI RAATTY 2 cut(s) 363, 532
XcmI CCANNNNNNNNNTGG 1 cut(s) 220
XmiI GTMKAC 1 cut(s) 346
XspI CTAG 1 cut(s) 843
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.