Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002545

Physical Location & Seq

Genomic Coordinates Forward (+)

3251097 .. 3254909

Gene Structure 3813 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG020900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGGGATGATCTCAAGGCAAGTTTTCCCTGTTTGTGAAAGCCTCTGCTTCTTTTGTCCTGCATTGCGCGCCAGATCACGCCATCCCGTCAAGCGTTACAAGAAGTTGCTCGCCGAGATTTTTCCTCGCTCTCCGGATGAAGAACCAAATGACCGCAAGATCAGTAAACTATGTGAATATGCCTCAAAAACTCCTCTCCGTATTCCAAAGATCACATCTACTCTGGAGCAAAGATGTTACAAGGACTTGAGAACTGAGAACGTCCACTCTGTGAAAGTGGTCATGTGTATCTACCGGAAGTTGTTGATTTCTTGTAAGAATCAAATGCCATTGTTTGCAAGTAGTCTACTTAGCATTGCTCAAATTCTGCTTGATCAAACACGACATGATGAAATACGTATTTTAGGATGCCAAACTCTTTTCGACTTTGTGAATAATCAGAAGGATGGTACTTATTTGTTTAACTTAGACAGCATGATTCCAAAACTTTGTCAAATAGCTCAAGAAATGAGGGAGGATGGGACAGCAATGAATTTGCGGGCAGCTGGGCTTCAAGCTCTTTCATCAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

190

Amino Acids

21.84

Weight (kDa)

9.2

Isoelectric Point (pI)

46.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EFR3	PF21072	34 - 127	6.3e-06	EFR3 protein
EFR3_ARM	PF21052	65 - 159	1.6e-18	EFR3, armadillo repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002545)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02130 FvH4_4g19090 FvH4_4g19090 FvH4_4g19090 FvH4_4g19090
malus_domestica	MD02G1308900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0316701 RchiOBHm_Chr1g0322201 RchiOBHm_Chr1g0331421
rosa_laevigata	RLG00000001007 RLG00000015282 RLG00000018939 RLG00000021189 RLG00000022243 RLG00000026167 RLG00000032388
rosa_multiflora	Rmu_sc0002667.1_g000001 Rmu_sc0005467.1_g000011 Rmu_sc0006942.1_g000001 Rmu_sc0007199.1_g000009 Rmu_sc0011314.1_g000010
rosa_roxburghii	Rroxscaffold_6G00406050 Rroxscaffold_7G00160900
rosa_samantha	Rh1AG023400 Rh1CG020200 Rh1CG022200 Rh1DG017900 Rh1DG020300 Rh1DG020900 Rh2AG275200 Rh2BG437500 Rh3DG271900 Rh4BG003200 Rh4BG137900 Rh4CG142900 Rh4DG257100 Rh5AG116000 Rh6CG275000 Rh7DG386000
rosa_wichuraiana	Rw1G001510 Rw1G001710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	346
AccII	CGCG	1 cut(s)	69
AccIII	TCCGGA	1 cut(s)	133
AciI	CCGC	2 cut(s)	154, 538
AcsI	RAATTY	2 cut(s)	363, 532
AdeI	CACNNNGTG	1 cut(s)	271
AfaI	GTAC	1 cut(s)	451
AgsI	TTSAA	1 cut(s)	554
AluBI	AGCT	3 cut(s)	500, 545, 557
AluI	AGCT	3 cut(s)	500, 545, 557
Aor13HI	TCCGGA	1 cut(s)	133
ApeKI	GCWGC	1 cut(s)	542
ApoI	RAATTY	2 cut(s)	363, 532
AspLEI	GCGC	2 cut(s)	69, 71
BbvI	GCAGC	1 cut(s)	554
BccI	CCATC	3 cut(s)	90, 440, 512
BclI	TGATCA	1 cut(s)	373
BisI	GCNGC	1 cut(s)	543
BlsI	GCNGC	1 cut(s)	544
BmsI	GCATC	1 cut(s)	398
BpmI	CTGGAG	1 cut(s)	245
BpuEI	CTTGAG	2 cut(s)	268, 486
BsaAI	YACGTR	1 cut(s)	398
BsaWI	WCCGGW	2 cut(s)	133, 294
Bse3DI	GCAATG	3 cut(s)	62, 354, 534
BseAI	TCCGGA	1 cut(s)	133
BseGI	GGATG	6 cut(s)	12, 82, 142, 413, 451, 523
BseMI	GCAATG	3 cut(s)	62, 354, 534
BseMII	CTCAG	1 cut(s)	246
BsePI	GCGCGC	1 cut(s)	67
BseRI	GAGGAG	1 cut(s)	183
BseXI	GCAGC	1 cut(s)	554
BseYI	CCCAGC	1 cut(s)	545
Bsh1236I	CGCG	1 cut(s)	69
BsiSI	CCGG	2 cut(s)	134, 295
BslFI	GGGAC	1 cut(s)	535
BsmFI	GGGAC	1 cut(s)	535
Bsp13I	TCCGGA	1 cut(s)	133
Bsp143I	GATC	5 cut(s)	9, 74, 159, 210, 373
BspACI	CCGC	2 cut(s)	154, 538
BspCNI	CTCAG	1 cut(s)	247
BspEI	TCCGGA	1 cut(s)	133
BspFNI	CGCG	1 cut(s)	69
BsrDI	GCAATG	3 cut(s)	62, 354, 534
BssHII	GCGCGC	1 cut(s)	67
BssMI	GATC	5 cut(s)	9, 74, 159, 210, 373
BstBAI	YACGTR	1 cut(s)	398
BstC8I	GCNNGC	3 cut(s)	69, 111, 540
BstDEI	CTNAG	3 cut(s)	255, 350, 466
BstF5I	GGATG	6 cut(s)	12, 82, 142, 413, 451, 523
BstFNI	CGCG	1 cut(s)	69
BstHHI	GCGC	2 cut(s)	69, 71
BstKTI	GATC	5 cut(s)	12, 77, 162, 213, 376
BstMBI	GATC	5 cut(s)	9, 74, 159, 210, 373
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstSNI	TACGTA	1 cut(s)	398
BstUI	CGCG	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	554
BtsCI	GGATG	6 cut(s)	12, 82, 142, 413, 451, 523
Cac8I	GCNNGC	3 cut(s)	69, 111, 540
CfoI	GCGC	2 cut(s)	69, 71
Csp6I	GTAC	1 cut(s)	450
CviAII	CATG	3 cut(s)	283, 386, 475
CviJI	RGCY	5 cut(s)	42, 500, 545, 550, 557
CviKI_1	RGCY	5 cut(s)	42, 500, 545, 550, 557
CviQI	GTAC	1 cut(s)	450
DdeI	CTNAG	3 cut(s)	255, 350, 466
DpnI	GATC	5 cut(s)	11, 76, 161, 212, 375
DpnII	GATC	5 cut(s)	9, 74, 159, 210, 373
DraIII	CACNNNGTG	1 cut(s)	271
Eco105I	TACGTA	1 cut(s)	398
FaeI	CATG	3 cut(s)	286, 389, 478
FaiI	YATR	5 cut(s)	172, 180, 284, 387, 476
FaqI	GGGAC	1 cut(s)	535
FatI	CATG	3 cut(s)	282, 385, 474
FauI	CCCGC	1 cut(s)	531
FbaI	TGATCA	1 cut(s)	373
FblI	GTMKAC	1 cut(s)	346
Fnu4HI	GCNGC	1 cut(s)	543
FokI	GGATG	6 cut(s)	19, 69, 149, 420, 458, 530
Fsp4HI	GCNGC	1 cut(s)	543
GlaI	GCGC	2 cut(s)	68, 70
GluI	GCNGC	1 cut(s)	543
GsaI	CCCAGC	1 cut(s)	549
GsuI	CTGGAG	1 cut(s)	245
HapII	CCGG	2 cut(s)	134, 295
HhaI	GCGC	2 cut(s)	69, 71
Hin1II	CATG	3 cut(s)	286, 389, 478
Hin6I	GCGC	2 cut(s)	67, 69
HinP1I	GCGC	2 cut(s)	67, 69
HinfI	GANTC	2 cut(s)	319, 478
HpaII	CCGG	2 cut(s)	134, 295
Hpy166II	GTNNAC	3 cut(s)	167, 265, 347
Hpy188I	TCNGA	1 cut(s)	441
Hpy188III	TCNNGA	3 cut(s)	134, 224, 503
Hpy8I	GTNNAC	3 cut(s)	167, 265, 347
HpyAV	CCTTC	1 cut(s)	436
HpyCH4IV	ACGT	2 cut(s)	261, 397
HpyCH4V	TGCA	2 cut(s)	62, 338
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	3 cut(s)	255, 350, 466
HpySE526I	ACGT	2 cut(s)	261, 397
Hsp92II	CATG	3 cut(s)	286, 389, 478
HspAI	GCGC	2 cut(s)	67, 69
Kpn2I	TCCGGA	1 cut(s)	133
Ksp22I	TGATCA	1 cut(s)	373
Kzo9I	GATC	5 cut(s)	9, 74, 159, 210, 373
LmnI	GCTCC	1 cut(s)	226
LpnPI	CCDG	7 cut(s)	42, 72, 85, 147, 209, 308, 531
Lsp1109I	GCAGC	1 cut(s)	554
LweI	GCATC	1 cut(s)	398
MaeII	ACGT	2 cut(s)	261, 397
MaeIII	GTNAC	2 cut(s)	95, 236
MalI	GATC	5 cut(s)	11, 76, 161, 212, 375
MboI	GATC	5 cut(s)	9, 74, 159, 210, 373
MboII	GAAGA	1 cut(s)	152
MluCI	AATT	2 cut(s)	363, 532
MnlI	CCTC	6 cut(s)	53, 135, 193, 204, 504, 508
MroI	TCCGGA	1 cut(s)	133
MseI	TTAA	1 cut(s)	462
MspA1I	CMGCKG	1 cut(s)	545
MspI	CCGG	2 cut(s)	134, 295
MvnI	CGCG	1 cut(s)	69
MwoI	GCNNNNNNNGC	1 cut(s)	68
NdeII	GATC	5 cut(s)	9, 74, 159, 210, 373
NlaIII	CATG	3 cut(s)	286, 389, 478
NmeAIII	GCCGAG	1 cut(s)	139
PauI	GCGCGC	1 cut(s)	67
PfeI	GAWTC	2 cut(s)	319, 478
PkrI	GCNGC	1 cut(s)	544
Ppu21I	YACGTR	1 cut(s)	398
PspFI	CCCAGC	1 cut(s)	545
PteI	GCGCGC	1 cut(s)	67
PvuII	CAGCTG	1 cut(s)	545
RsaI	GTAC	1 cut(s)	451
RsaNI	GTAC	1 cut(s)	450
SaqAI	TTAA	1 cut(s)	462
SatI	GCNGC	1 cut(s)	543
Sau3AI	GATC	5 cut(s)	9, 74, 159, 210, 373
SetI	ASST	5 cut(s)	264, 400, 502, 547, 559
SfaNI	GCATC	1 cut(s)	398
SmlI	CTYRAG	3 cut(s)	13, 247, 501
SmoI	CTYRAG	3 cut(s)	13, 247, 501
SnaBI	TACGTA	1 cut(s)	398
Sse9I	AATT	2 cut(s)	363, 532
SsiI	CCGC	2 cut(s)	154, 538
TaiI	ACGT	2 cut(s)	264, 400
TaqI	TCGA	1 cut(s)	423
TasI	AATT	2 cut(s)	363, 532
TfiI	GAWTC	2 cut(s)	319, 478
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TseI	GCWGC	1 cut(s)	542
TspDTI	ATGAA	4 cut(s)	153, 405, 545, 552
TspGWI	ACGGA	1 cut(s)	188
XapI	RAATTY	2 cut(s)	363, 532
XmiI	GTMKAC	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.