Rw1G001710

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0002545
Physical Location & Seq
Forward (+)
2971009 .. 2972471
1463 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G001710.1

Sequence Viewer

Length: 330 bp
ATGGGGATGATCTCAAGGCAAGTTTTCCCTGTTTGTGAAAGCCTCTGCTTCTTTTGTCCTGCATTGCGTGCCAGATCACGCCATCCCGTCAAGCGTTACAAGAAGTTGCTCGCCGAGATTTTTCCTCGCTCTCCGGATGAAGAACCAAATGACCGCAAGATCAGTAAACTATGTGAATATGCCTCAAAAACTCCTCTCCGTATTCCAAAGATCACATCTACTCTGGAGCAAAGATGTTACAAGGACTTGAGAACTGAGAACTTCCACTCTGTGAAAGTGGTCATGTGTATCTACCGGAAGTTGTTGATTTCTTGTAAGGATCAAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.86

Weight (kDa)

9.61

Isoelectric Point (pI)

52.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EFR3_ARM PF21052 65 - 108 9.5e-07 EFR3, armadillo repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 133
AciI CCGC 1 cut(s) 154
AclWI GGATC 1 cut(s) 327
AdeI CACNNNGTG 1 cut(s) 271
AlwI GGATC 1 cut(s) 327
Aor13HI TCCGGA 1 cut(s) 133
BccI CCATC 1 cut(s) 90
BpmI CTGGAG 1 cut(s) 245
BpuEI CTTGAG 1 cut(s) 268
BsaWI WCCGGW 2 cut(s) 133, 294
Bse3DI GCAATG 1 cut(s) 62
BseAI TCCGGA 1 cut(s) 133
BseGI GGATG 3 cut(s) 12, 82, 142
BseMI GCAATG 1 cut(s) 62
BseMII CTCAG 1 cut(s) 246
BseRI GAGGAG 1 cut(s) 183
BsiSI CCGG 2 cut(s) 134, 295
Bsp13I TCCGGA 1 cut(s) 133
Bsp143I GATC 5 cut(s) 9, 74, 159, 210, 319
BspACI CCGC 1 cut(s) 154
BspCNI CTCAG 1 cut(s) 247
BspEI TCCGGA 1 cut(s) 133
BspPI GGATC 1 cut(s) 327
BsrDI GCAATG 1 cut(s) 62
BssMI GATC 5 cut(s) 9, 74, 159, 210, 319
BstAPI GCANNNNNTGC 1 cut(s) 68
BstC8I GCNNGC 2 cut(s) 69, 111
BstDEI CTNAG 1 cut(s) 255
BstF5I GGATG 3 cut(s) 12, 82, 142
BstKTI GATC 5 cut(s) 12, 77, 162, 213, 322
BstMBI GATC 5 cut(s) 9, 74, 159, 210, 319
BstMWI GCNNNNNNNGC 1 cut(s) 68
BtsCI GGATG 3 cut(s) 12, 82, 142
Cac8I GCNNGC 2 cut(s) 69, 111
CviAII CATG 1 cut(s) 283
CviJI RGCY 1 cut(s) 42
CviKI_1 RGCY 1 cut(s) 42
DdeI CTNAG 1 cut(s) 255
DpnI GATC 5 cut(s) 11, 76, 161, 212, 321
DpnII GATC 5 cut(s) 9, 74, 159, 210, 319
DraIII CACNNNGTG 1 cut(s) 271
FaeI CATG 1 cut(s) 286
FaiI YATR 3 cut(s) 172, 180, 284
FatI CATG 1 cut(s) 282
FokI GGATG 3 cut(s) 19, 69, 149
GsuI CTGGAG 1 cut(s) 245
HapII CCGG 2 cut(s) 134, 295
Hin1II CATG 1 cut(s) 286
HpaII CCGG 2 cut(s) 134, 295
Hpy166II GTNNAC 1 cut(s) 167
Hpy188III TCNNGA 2 cut(s) 134, 224
Hpy8I GTNNAC 1 cut(s) 167
HpyCH4V TGCA 1 cut(s) 62
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 1 cut(s) 255
Hsp92II CATG 1 cut(s) 286
Kpn2I TCCGGA 1 cut(s) 133
Kzo9I GATC 5 cut(s) 9, 74, 159, 210, 319
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 6 cut(s) 42, 72, 85, 147, 209, 308
MaeIII GTNAC 2 cut(s) 95, 236
MalI GATC 5 cut(s) 11, 76, 161, 212, 321
MboI GATC 5 cut(s) 9, 74, 159, 210, 319
MboII GAAGA 1 cut(s) 152
MnlI CCTC 4 cut(s) 53, 135, 193, 204
MroI TCCGGA 1 cut(s) 133
MspI CCGG 2 cut(s) 134, 295
MwoI GCNNNNNNNGC 1 cut(s) 68
NdeII GATC 5 cut(s) 9, 74, 159, 210, 319
NlaIII CATG 1 cut(s) 286
NmeAIII GCCGAG 1 cut(s) 139
Sau3AI GATC 5 cut(s) 9, 74, 159, 210, 319
SmlI CTYRAG 2 cut(s) 13, 247
SmoI CTYRAG 2 cut(s) 13, 247
SsiI CCGC 1 cut(s) 154
TspDTI ATGAA 1 cut(s) 153
TspGWI ACGGA 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.