Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005467.1

Orthogroup ID

OG0002545

Physical Location & Seq

Genomic Coordinates Forward (+)

52581 .. 52979

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005467.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ctgcagcctctgtctcgaaggacgtgtgccatagtcacaaggcaggtagctgaggctgtggtgaggccgaggacgaggttggctgcgaaaaagctaaaggaagaggaggtgttgtcgaagccggagaaggagaaggagaaggaccgcgtgattgtgatttcggagaaggaagactccgattcggagggtgaaagggagcaagaagaagaagagaacaaagctatgatggctgacgataggggtggcttgagcgctaacaaggctgctgggcaagaagaagagggcagtacggtgtcgtttcctgaaaaggtatccgaaaatctgcgcctttatttcagttgggtcgatgctggttctgatgaattgtgttatttgtttaattcttatattgatgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 ko04392 map04011 map04392

Pfam Domains

Protein Families

Pkinase

Protein Analysis

132

Amino Acids

14.91

Weight (kDa)

4.73

Isoelectric Point (pI)

53.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002545)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02130 FvH4_4g19090 FvH4_4g19090 FvH4_4g19090 FvH4_4g19090
malus_domestica	MD02G1308900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0316701 RchiOBHm_Chr1g0322201 RchiOBHm_Chr1g0331421
rosa_laevigata	RLG00000001007 RLG00000015282 RLG00000018939 RLG00000021189 RLG00000022243 RLG00000026167 RLG00000032388
rosa_multiflora	Rmu_sc0002667.1_g000001 Rmu_sc0005467.1_g000011 Rmu_sc0006942.1_g000001 Rmu_sc0007199.1_g000009 Rmu_sc0011314.1_g000010
rosa_roxburghii	Rroxscaffold_6G00406050 Rroxscaffold_7G00160900
rosa_samantha	Rh1AG023400 Rh1CG020200 Rh1CG022200 Rh1DG017900 Rh1DG020300 Rh1DG020900 Rh2AG275200 Rh2BG437500 Rh3DG271900 Rh4BG003200 Rh4BG137900 Rh4CG142900 Rh4DG257100 Rh5AG116000 Rh6CG275000 Rh7DG386000
rosa_wichuraiana	Rw1G001510 Rw1G001710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	34
AccII	CGCG	1 cut(s)	147
AciI	CCGC	1 cut(s)	145
AfaI	GTAC	1 cut(s)	289
AfeI	AGCGCT	1 cut(s)	253
AflIII	ACRYGT	1 cut(s)	23
AjiI	CACGTC	1 cut(s)	24
AluBI	AGCT	3 cut(s)	50, 94, 221
AluI	AGCT	3 cut(s)	50, 94, 221
Alw26I	GTCTC	1 cut(s)	18
AlwNI	CAGNNNCTG	1 cut(s)	10
Aor51HI	AGCGCT	1 cut(s)	253
AoxI	GGCC	1 cut(s)	65
ApeKI	GCWGC	3 cut(s)	4, 83, 263
AspLEI	GCGC	2 cut(s)	254, 327
AspS9I	GGNCC	1 cut(s)	142
AsuHPI	GGTGA	2 cut(s)	73, 200
AvaII	GGWCC	1 cut(s)	142
BbsI	GAAGAC	1 cut(s)	177
BbvCI	CCTCAGC	1 cut(s)	51
BbvI	GCAGC	3 cut(s)	16, 70, 250
BccI	CCATC	1 cut(s)	220
BciVI	GTATCC	1 cut(s)	322
BcoDI	GTCTC	1 cut(s)	18
BfmI	CTRYAG	1 cut(s)	2
BfoI	RGCGCY	1 cut(s)	255
BfuAI	ACCTGC	1 cut(s)	34
BfuI	GTATCC	1 cut(s)	322
BisI	GCNGC	3 cut(s)	5, 84, 264
BlsI	GCNGC	3 cut(s)	6, 85, 265
Bme18I	GGWCC	1 cut(s)	142
BmgBI	CACGTC	1 cut(s)	24
BmgT120I	GGNCC	1 cut(s)	142
BmsI	GCATC	2 cut(s)	337, 382
BpiI	GAAGAC	1 cut(s)	177
Bpu10I	CCTNAGC	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	268
BsaJI	CCNNGG	1 cut(s)	68
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
BseDI	CCNNGG	1 cut(s)	68
BseMII	CTCAG	1 cut(s)	42
BseRI	GAGGAG	1 cut(s)	119
BseXI	GCAGC	3 cut(s)	16, 70, 250
BseYI	CCCAGC	1 cut(s)	266
Bsh1236I	CGCG	1 cut(s)	147
BshFI	GGCC	1 cut(s)	67
BsiSI	CCGG	1 cut(s)	122
BsmAI	GTCTC	1 cut(s)	18
BsnI	GGCC	1 cut(s)	67
BspACI	CCGC	1 cut(s)	145
BspANI	GGCC	1 cut(s)	67
BspCNI	CTCAG	1 cut(s)	43
BspFNI	CGCG	1 cut(s)	147
BspMAI	CTGCAG	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	34
BssECI	CCNNGG	1 cut(s)	68
Bst4CI	ACNGT	1 cut(s)	292
Bst6I	CTCTTC	3 cut(s)	96, 204, 273
BstDEI	CTNAG	1 cut(s)	51
BstFNI	CGCG	1 cut(s)	147
BstH2I	RGCGCY	1 cut(s)	255
BstHHI	GCGC	2 cut(s)	254, 327
BstMAI	GTCTC	1 cut(s)	18
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 260
BstSFI	CTRYAG	1 cut(s)	2
BstUI	CGCG	1 cut(s)	147
BstV1I	GCAGC	3 cut(s)	16, 70, 250
BstV2I	GAAGAC	1 cut(s)	177
BsuI	GTATCC	1 cut(s)	322
BsuRI	GGCC	1 cut(s)	67
BtrI	CACGTC	1 cut(s)	24
BveI	ACCTGC	1 cut(s)	34
CaiI	CAGNNNCTG	1 cut(s)	10
CfoI	GCGC	2 cut(s)	254, 327
Cfr13I	GGNCC	1 cut(s)	142
Csp6I	GTAC	1 cut(s)	288
CviAII	CATG	1 cut(s)	396
CviQI	GTAC	1 cut(s)	288
DdeI	CTNAG	1 cut(s)	51
Eam1104I	CTCTTC	3 cut(s)	96, 204, 273
EarI	CTCTTC	3 cut(s)	96, 204, 273
Eco47I	GGWCC	1 cut(s)	142
Eco47III	AGCGCT	1 cut(s)	253
EcoT22I	ATGCAT	1 cut(s)	397
FaeI	CATG	1 cut(s)	399
FaiI	YATR	4 cut(s)	32, 224, 387, 397
FatI	CATG	1 cut(s)	395
Fnu4HI	GCNGC	3 cut(s)	5, 84, 264
Fsp4HI	GCNGC	3 cut(s)	5, 84, 264
GlaI	GCGC	2 cut(s)	253, 326
GluI	GCNGC	3 cut(s)	5, 84, 264
GsaI	CCCAGC	1 cut(s)	270
HaeII	RGCGCY	1 cut(s)	255
HaeIII	GGCC	1 cut(s)	67
HapII	CCGG	1 cut(s)	122
HhaI	GCGC	2 cut(s)	254, 327
Hin1II	CATG	1 cut(s)	399
Hin6I	GCGC	2 cut(s)	252, 325
HinP1I	GCGC	2 cut(s)	252, 325
HinfI	GANTC	2 cut(s)	173, 179
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	2 cut(s)	73, 200
Hpy188I	TCNGA	5 cut(s)	163, 178, 184, 316, 358
Hpy188III	TCNNGA	2 cut(s)	15, 302
HpyAV	CCTTC	5 cut(s)	12, 121, 127, 133, 160
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	2 cut(s)	4, 395
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 260
HpyF3I	CTNAG	1 cut(s)	51
HpySE526I	ACGT	1 cut(s)	23
Hsp92II	CATG	1 cut(s)	399
HspAI	GCGC	2 cut(s)	252, 325
LmnI	GCTCC	1 cut(s)	196
LpnPI	CCDG	5 cut(s)	29, 135, 252, 315, 336
Lsp1109I	GCAGC	3 cut(s)	16, 70, 250
LweI	GCATC	2 cut(s)	337, 382
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	1 cut(s)	34
MboII	GAAGA	7 cut(s)	113, 182, 215, 218, 221, 287, 290
MluCI	AATT	2 cut(s)	362, 379
MlyI	GAGTC	1 cut(s)	167
MnlI	CCTC	9 cut(s)	18, 46, 57, 63, 69, 97, 100, 178, 274
Mph1103I	ATGCAT	1 cut(s)	397
MseI	TTAA	1 cut(s)	378
MspI	CCGG	1 cut(s)	122
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	2 cut(s)	227, 260
NlaIII	CATG	1 cut(s)	399
NmeAIII	GCCGAG	1 cut(s)	93
NmuCI	GTSAC	1 cut(s)	34
NsiI	ATGCAT	1 cut(s)	397
PfeI	GAWTC	1 cut(s)	179
PkrI	GCNGC	3 cut(s)	6, 85, 265
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
PspFI	CCCAGC	1 cut(s)	266
PspPI	GGNCC	1 cut(s)	142
PstI	CTGCAG	1 cut(s)	6
PstNI	CAGNNNCTG	1 cut(s)	10
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	3 cut(s)	5, 84, 264
Sau96I	GGNCC	1 cut(s)	142
SchI	GAGTC	1 cut(s)	167
SetI	ASST	8 cut(s)	26, 48, 52, 80, 96, 111, 223, 312
SfaNI	GCATC	2 cut(s)	337, 382
SfcI	CTRYAG	1 cut(s)	2
SinI	GGWCC	1 cut(s)	142
SmlI	CTYRAG	1 cut(s)	247
SmoI	CTYRAG	1 cut(s)	247
Sse9I	AATT	2 cut(s)	362, 379
SsiI	CCGC	1 cut(s)	145
TaaI	ACNGT	1 cut(s)	292
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	3 cut(s)	16, 116, 345
TasI	AATT	2 cut(s)	362, 379
TfiI	GAWTC	1 cut(s)	179
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	3 cut(s)	4, 83, 263
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	1 cut(s)	375
VpaK11BI	GGWCC	1 cut(s)	142
Zsp2I	ATGCAT	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.