Rw1G001510

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0002545
Physical Location & Seq
Forward (+)
2546533 .. 2550582
4050 bp
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UTR
Exon/CDS
Intron
Rw1G001510.1

Sequence Viewer

Length: 354 bp
ATGGCTGACGATAGTGGTGGCTTGAGTGCTAACAAGGTTGCTGGGCAAGAAGAAGAGAACAGTACGACGCCGTTTCCAGAAAAGGATGAAGAACCAAATGACGGCAAGATCAGTAAACTGTGTGAATATGCCTCAAAAACTCCTCTCCGTATTCCAAAGATCACATCTACTCTGGAGCAAAGATGTTACAAGGACTTGAGAACTGAGAACTTCCACTCTGTGAAAGTGGTTATGTGTATCTACCGGAAGTTGTTGATTTCTTTTAAGGATCAAATGCCATTGTTTGCAAGTAGTCCACTTAGCATTGCTCAAATTCTGCTTGATCAAACACGACATGATGAAATACGTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.26

Weight (kDa)

5.69

Isoelectric Point (pI)

44.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EFR3_ARM PF21052 48 - 112 2.4e-09 EFR3, armadillo repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 276
AcsI RAATTY 1 cut(s) 312
AcyI GRCGYC 1 cut(s) 68
AdeI CACNNNGTG 1 cut(s) 220
AfaI GTAC 1 cut(s) 64
AfiI CCNNNNNNNGG 1 cut(s) 101
AlwI GGATC 1 cut(s) 276
ApoI RAATTY 1 cut(s) 312
BceAI ACGGC 2 cut(s) 55, 118
BclI TGATCA 1 cut(s) 322
BpmI CTGGAG 1 cut(s) 194
BpuEI CTTGAG 2 cut(s) 43, 217
BsaAI YACGTR 1 cut(s) 347
BsaHI GRCGYC 1 cut(s) 68
BsaWI WCCGGW 1 cut(s) 243
Bsc4I CCNNNNNNNGG 1 cut(s) 101
Bse3DI GCAATG 1 cut(s) 303
BseGI GGATG 1 cut(s) 91
BseLI CCNNNNNNNGG 1 cut(s) 101
BseMI GCAATG 1 cut(s) 303
BseMII CTCAG 1 cut(s) 195
BseRI GAGGAG 1 cut(s) 132
BseYI CCCAGC 1 cut(s) 41
BsiSI CCGG 1 cut(s) 244
BslI CCNNNNNNNGG 1 cut(s) 101
Bsp143I GATC 4 cut(s) 108, 159, 268, 322
BspCNI CTCAG 1 cut(s) 196
BspPI GGATC 1 cut(s) 276
BsrDI GCAATG 1 cut(s) 303
BssMI GATC 4 cut(s) 108, 159, 268, 322
BssNI GRCGYC 1 cut(s) 68
Bst4CI ACNGT 2 cut(s) 62, 120
Bst6I CTCTTC 1 cut(s) 48
BstACI GRCGYC 1 cut(s) 68
BstBAI YACGTR 1 cut(s) 347
BstDEI CTNAG 2 cut(s) 204, 299
BstF5I GGATG 1 cut(s) 91
BstKTI GATC 4 cut(s) 111, 162, 271, 325
BstMBI GATC 4 cut(s) 108, 159, 268, 322
BstSNI TACGTA 1 cut(s) 347
BtsCI GGATG 1 cut(s) 91
CseI GACGC 1 cut(s) 76
Csp6I GTAC 1 cut(s) 63
CviAII CATG 1 cut(s) 335
CviJI RGCY 2 cut(s) 5, 21
CviKI_1 RGCY 2 cut(s) 5, 21
CviQI GTAC 1 cut(s) 63
DdeI CTNAG 2 cut(s) 204, 299
DpnI GATC 4 cut(s) 110, 161, 270, 324
DpnII GATC 4 cut(s) 108, 159, 268, 322
DraIII CACNNNGTG 1 cut(s) 220
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
Eco105I TACGTA 1 cut(s) 347
FaeI CATG 1 cut(s) 338
FaiI YATR 3 cut(s) 129, 233, 336
FatI CATG 1 cut(s) 334
FbaI TGATCA 1 cut(s) 322
FokI GGATG 1 cut(s) 98
GsaI CCCAGC 1 cut(s) 45
GsuI CTGGAG 1 cut(s) 194
HapII CCGG 1 cut(s) 244
HgaI GACGC 1 cut(s) 76
Hin1I GRCGYC 1 cut(s) 68
Hin1II CATG 1 cut(s) 338
HpaII CCGG 1 cut(s) 244
Hpy166II GTNNAC 2 cut(s) 116, 296
Hpy188III TCNNGA 2 cut(s) 77, 173
Hpy8I GTNNAC 2 cut(s) 116, 296
Hpy99I CGWCG 1 cut(s) 70
HpyCH4III ACNGT 2 cut(s) 62, 120
HpyCH4IV ACGT 1 cut(s) 346
HpyCH4V TGCA 1 cut(s) 287
HpyF3I CTNAG 2 cut(s) 204, 299
HpySE526I ACGT 1 cut(s) 346
Hsp92I GRCGYC 1 cut(s) 68
Hsp92II CATG 1 cut(s) 338
Ksp22I TGATCA 1 cut(s) 322
Kzo9I GATC 4 cut(s) 108, 159, 268, 322
LmnI GCTCC 1 cut(s) 175
LpnPI CCDG 4 cut(s) 27, 90, 158, 257
MaeII ACGT 1 cut(s) 346
MaeIII GTNAC 1 cut(s) 185
MalI GATC 4 cut(s) 110, 161, 270, 324
MboI GATC 4 cut(s) 108, 159, 268, 322
MboII GAAGA 3 cut(s) 62, 65, 101
MluCI AATT 1 cut(s) 312
MnlI CCTC 2 cut(s) 142, 153
MseI TTAA 2 cut(s) 264, 352
MspI CCGG 1 cut(s) 244
NdeII GATC 4 cut(s) 108, 159, 268, 322
NlaIII CATG 1 cut(s) 338
Ppu21I YACGTR 1 cut(s) 347
PspFI CCCAGC 1 cut(s) 41
RsaI GTAC 1 cut(s) 64
RsaNI GTAC 1 cut(s) 63
SaqAI TTAA 2 cut(s) 264, 352
Sau3AI GATC 4 cut(s) 108, 159, 268, 322
SetI ASST 2 cut(s) 39, 349
SmlI CTYRAG 2 cut(s) 22, 196
SmoI CTYRAG 2 cut(s) 22, 196
SnaBI TACGTA 1 cut(s) 347
Sse9I AATT 1 cut(s) 312
TaaI ACNGT 2 cut(s) 62, 120
TaiI ACGT 1 cut(s) 349
TasI AATT 1 cut(s) 312
Tru1I TTAA 2 cut(s) 264, 352
Tru9I TTAA 2 cut(s) 264, 352
TspDTI ATGAA 2 cut(s) 102, 354
TspGWI ACGGA 1 cut(s) 137
XapI RAATTY 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.