Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002545

Physical Location & Seq

Genomic Coordinates Forward (+)

61955513 .. 61958873

Gene Structure 3361 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG437500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCAGAGAGAGAGAGACCGGAGGGCAAGGACCTAGGGGAGGCAGAAGCCTTTGTCGCCGATGAGGTCGCTCTAGACCGCCGAGGAGGTCGATCTCGACCATCACTCACATCCTTGCCTTCTTCGCCGGCTCTGACGGTATCATTCTCAAGAATCTCACTGGTGTTGAAAAACCGGCGTGGAAAAACAGAAGAGAAGGAAGACTCCGATTCAGAGAGTGAAAGGGAGGAAGAAGAAGAAGAGAACAAAGCTGTGATGGCTGACGATAGTGGTGGCTTGAGTGCTAACAAGGCTGCTGGGCAAGAAGAAGAGGGCAGTACGACGCCGTTTCTTGAAAAGGTTGAACATACGCTAGCACATGCACGAGCACGAGCTAGAGAATCAATAACGTATGCTTCAGGTATATACTTTTGTGAGGCTATGATTACTGCAGCTAGCATTCTTATTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 ko04392 map04011 map04392

Pfam Domains

Protein Families

Pkinase

Protein Analysis

150

Amino Acids

16.33

Weight (kDa)

4.76

Isoelectric Point (pI)

69.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002545)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02130 FvH4_4g19090 FvH4_4g19090 FvH4_4g19090 FvH4_4g19090
malus_domestica	MD02G1308900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0316701 RchiOBHm_Chr1g0322201 RchiOBHm_Chr1g0331421
rosa_laevigata	RLG00000001007 RLG00000015282 RLG00000018939 RLG00000021189 RLG00000022243 RLG00000026167 RLG00000032388
rosa_multiflora	Rmu_sc0002667.1_g000001 Rmu_sc0005467.1_g000011 Rmu_sc0006942.1_g000001 Rmu_sc0007199.1_g000009 Rmu_sc0011314.1_g000010
rosa_roxburghii	Rroxscaffold_6G00406050 Rroxscaffold_7G00160900
rosa_samantha	Rh1AG023400 Rh1CG020200 Rh1CG022200 Rh1DG017900 Rh1DG020300 Rh1DG020900 Rh2AG275200 Rh2BG437500 Rh3DG271900 Rh4BG003200 Rh4BG137900 Rh4CG142900 Rh4DG257100 Rh5AG116000 Rh6CG275000 Rh7DG386000
rosa_wichuraiana	Rw1G001510 Rw1G001710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	79
AcuI	CTGAAG	1 cut(s)	381
AcyI	GRCGYC	1 cut(s)	323
AfaI	GTAC	1 cut(s)	319
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgsI	TTSAA	3 cut(s)	169, 335, 344
AluBI	AGCT	3 cut(s)	251, 374, 434
AluI	AGCT	3 cut(s)	251, 374, 434
Alw21I	GWGCWC	1 cut(s)	370
Alw26I	GTCTC	1 cut(s)	10
ApeKI	GCWGC	2 cut(s)	293, 431
AseI	ATTAAT	1 cut(s)	447
AspA2I	CCTAGG	1 cut(s)	34
AspS9I	GGNCC	1 cut(s)	31
AsuNHI	GCTAGC	2 cut(s)	352, 434
AvaII	GGWCC	1 cut(s)	31
AvrII	CCTAGG	1 cut(s)	34
BauI	CACGAG	2 cut(s)	363, 369
BbsI	GAAGAC	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	370
BbvI	GCAGC	2 cut(s)	280, 443
BccI	CCATC	2 cut(s)	109, 250
BceAI	ACGGC	1 cut(s)	310
BcoDI	GTCTC	1 cut(s)	10
BfaI	CTAG	5 cut(s)	35, 74, 353, 375, 435
BfmI	CTRYAG	1 cut(s)	429
BisI	GCNGC	2 cut(s)	294, 432
BlnI	CCTAGG	1 cut(s)	34
BlsI	GCNGC	2 cut(s)	295, 433
Bme18I	GGWCC	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	31
BmtI	GCTAGC	2 cut(s)	356, 438
BpiI	GAAGAC	1 cut(s)	207
BpuEI	CTTGAG	2 cut(s)	133, 298
BsaHI	GRCGYC	1 cut(s)	323
BsaI	GGTCTC	1 cut(s)	10
BsaJI	CCNNGG	2 cut(s)	34, 82
BsaWI	WCCGGW	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse118I	RCCGGY	2 cut(s)	127, 174
Bse1I	ACTGG	1 cut(s)	165
BseDI	CCNNGG	2 cut(s)	34, 82
BseGI	GGATG	1 cut(s)	110
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseNI	ACTGG	1 cut(s)	165
BseRI	GAGGAG	1 cut(s)	99
BseXI	GCAGC	2 cut(s)	280, 443
BseYI	CCCAGC	1 cut(s)	296
BsiHKAI	GWGCWC	1 cut(s)	370
BsiSI	CCGG	3 cut(s)	20, 128, 175
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmAI	GTCTC	1 cut(s)	10
BsmI	GAATGC	1 cut(s)	438
Bso31I	GGTCTC	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	370
Bsp143I	GATC	1 cut(s)	92
BspACI	CCGC	1 cut(s)	79
BspMAI	CTGCAG	1 cut(s)	433
BspOI	GCTAGC	2 cut(s)	356, 438
BspTNI	GGTCTC	1 cut(s)	10
BsrFI	RCCGGY	2 cut(s)	127, 174
BsrI	ACTGG	1 cut(s)	165
BssAI	RCCGGY	2 cut(s)	127, 174
BssECI	CCNNGG	2 cut(s)	34, 82
BssMI	GATC	1 cut(s)	92
BssNI	GRCGYC	1 cut(s)	323
BssSI	CACGAG	2 cut(s)	363, 369
BssT1I	CCWWGG	1 cut(s)	34
Bst2BI	CACGAG	2 cut(s)	363, 369
Bst4CI	ACNGT	1 cut(s)	139
Bst6I	CTCTTC	3 cut(s)	186, 234, 303
BstACI	GRCGYC	1 cut(s)	323
BstC8I	GCNNGC	3 cut(s)	129, 354, 436
BstENI	CCTNNNNNAGG	1 cut(s)	38
BstF5I	GGATG	1 cut(s)	110
BstKTI	GATC	1 cut(s)	95
BstMAI	GTCTC	1 cut(s)	10
BstMBI	GATC	1 cut(s)	92
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 124, 257, 290
BstNSI	RCATGY	1 cut(s)	362
BstSFI	CTRYAG	1 cut(s)	429
BstV1I	GCAGC	2 cut(s)	280, 443
BstV2I	GAAGAC	1 cut(s)	207
BtsCI	GGATG	1 cut(s)	110
BtsIMutI	CAGTG	1 cut(s)	158
Cac8I	GCNNGC	3 cut(s)	129, 354, 436
Cfr10I	RCCGGY	2 cut(s)	127, 174
Cfr13I	GGNCC	1 cut(s)	31
CseI	GACGC	1 cut(s)	331
Csp6I	GTAC	1 cut(s)	318
CviAII	CATG	1 cut(s)	359
CviJI	RGCY	9 cut(s)	50, 131, 251, 260, 276, 293, 374, 419, 434
CviKI_1	RGCY	9 cut(s)	50, 131, 251, 260, 276, 293, 374, 419, 434
CviQI	GTAC	1 cut(s)	318
DpnI	GATC	1 cut(s)	94
DpnII	GATC	1 cut(s)	92
Eam1104I	CTCTTC	3 cut(s)	186, 234, 303
EarI	CTCTTC	3 cut(s)	186, 234, 303
Eco130I	CCWWGG	1 cut(s)	34
Eco31I	GGTCTC	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	381
EcoNI	CCTNNNNNAGG	1 cut(s)	38
EcoO109I	RGGNCCY	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	34
ErhI	CCWWGG	1 cut(s)	34
FaeI	CATG	1 cut(s)	362
FaiI	YATR	6 cut(s)	348, 360, 393, 404, 406, 422
FatI	CATG	1 cut(s)	358
Fnu4HI	GCNGC	2 cut(s)	294, 432
FokI	GGATG	1 cut(s)	97
Fsp4HI	GCNGC	2 cut(s)	294, 432
FspBI	CTAG	5 cut(s)	35, 74, 353, 375, 435
GluI	GCNGC	2 cut(s)	294, 432
GsaI	CCCAGC	1 cut(s)	300
HapII	CCGG	3 cut(s)	20, 128, 175
HgaI	GACGC	1 cut(s)	331
Hin1I	GRCGYC	1 cut(s)	323
Hin1II	CATG	1 cut(s)	362
HinfI	GANTC	4 cut(s)	153, 203, 209, 380
HpaII	CCGG	3 cut(s)	20, 128, 175
Hpy188I	TCNGA	3 cut(s)	135, 208, 214
Hpy188III	TCNNGA	4 cut(s)	74, 96, 150, 332
Hpy99I	CGWCG	1 cut(s)	325
HpyAV	CCTTC	2 cut(s)	129, 190
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4IV	ACGT	1 cut(s)	389
HpyCH4V	TGCA	2 cut(s)	362, 431
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 124, 257, 290
HpySE526I	ACGT	1 cut(s)	389
Hsp92I	GRCGYC	1 cut(s)	323
Hsp92II	CATG	1 cut(s)	362
KroI	GCCGGC	1 cut(s)	127
KroNI	GCCGGC	1 cut(s)	129
Kzo9I	GATC	1 cut(s)	92
LpnPI	CCDG	6 cut(s)	33, 141, 146, 188, 282, 384
Lsp1109I	GCAGC	2 cut(s)	280, 443
MaeI	CTAG	5 cut(s)	35, 74, 353, 375, 435
MaeII	ACGT	1 cut(s)	389
MalI	GATC	1 cut(s)	94
MboI	GATC	1 cut(s)	92
MboII	GAAGA	9 cut(s)	114, 203, 212, 242, 245, 248, 251, 317, 320
MhlI	GDGCHC	1 cut(s)	370
MluCI	AATT	1 cut(s)	448
MlyI	GAGTC	1 cut(s)	197
MnlI	CCTC	8 cut(s)	16, 34, 58, 77, 80, 220, 304, 409
MroNI	GCCGGC	1 cut(s)	127
MseI	TTAA	1 cut(s)	447
MspI	CCGG	3 cut(s)	20, 128, 175
Mva1269I	GAATGC	1 cut(s)	438
MwoI	GCNNNNNNNGC	4 cut(s)	56, 124, 257, 290
NaeI	GCCGGC	1 cut(s)	129
NdeII	GATC	1 cut(s)	92
NgoMIV	GCCGGC	1 cut(s)	127
NheI	GCTAGC	2 cut(s)	352, 434
NlaIII	CATG	1 cut(s)	362
NmeAIII	GCCGAG	1 cut(s)	107
NspI	RCATGY	1 cut(s)	362
PctI	GAATGC	1 cut(s)	438
PdiI	GCCGGC	1 cut(s)	129
PfeI	GAWTC	3 cut(s)	153, 209, 380
PkrI	GCNGC	2 cut(s)	295, 433
PleI	GAGTC	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	197
PpuMI	RGGWCCY	1 cut(s)	31
PshBI	ATTAAT	1 cut(s)	447
Psp5II	RGGWCCY	1 cut(s)	31
PspFI	CCCAGC	1 cut(s)	296
PspPI	GGNCC	1 cut(s)	31
PspPPI	RGGWCCY	1 cut(s)	31
PstI	CTGCAG	1 cut(s)	433
RsaI	GTAC	1 cut(s)	319
RsaNI	GTAC	1 cut(s)	318
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	2 cut(s)	294, 432
Sau3AI	GATC	1 cut(s)	92
Sau96I	GGNCC	1 cut(s)	31
SchI	GAGTC	1 cut(s)	197
SduI	GDGCHC	1 cut(s)	370
SetI	ASST	9 cut(s)	36, 69, 91, 253, 342, 376, 392, 403, 436
SfcI	CTRYAG	1 cut(s)	429
SinI	GGWCC	1 cut(s)	31
SmlI	CTYRAG	2 cut(s)	148, 277
SmoI	CTYRAG	2 cut(s)	148, 277
Sse9I	AATT	1 cut(s)	448
SsiI	CCGC	1 cut(s)	79
SspMI	CTAG	5 cut(s)	35, 74, 353, 375, 435
StyI	CCWWGG	1 cut(s)	34
TaaI	ACNGT	1 cut(s)	139
TaiI	ACGT	1 cut(s)	392
TaqI	TCGA	2 cut(s)	91, 97
TasI	AATT	1 cut(s)	448
TfiI	GAWTC	3 cut(s)	153, 209, 380
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	1 cut(s)	165
TseI	GCWGC	2 cut(s)	293, 431
TspRI	CASTG	1 cut(s)	165
VpaK11BI	GGWCC	1 cut(s)	31
VspI	ATTAAT	1 cut(s)	447
XagI	CCTNNNNNAGG	1 cut(s)	38
XbaI	TCTAGA	1 cut(s)	73
XceI	RCATGY	1 cut(s)	362
XmaJI	CCTAGG	1 cut(s)	34
XspI	CTAG	5 cut(s)	35, 74, 353, 375, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.