Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002545

Physical Location & Seq

Genomic Coordinates Reverse (-)

43144103 .. 43147049

Gene Structure 2947 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018939

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGTTGCAAGAGCTCCTTTTTGGCTGGTCAGACCTCAGAGTAGCATTAAATCAGCGGAACATGACACTCAGCTGTAAATATAATGATCGAGTCGTTGTGGTGAGGCCGAGGACGAGGTTGGCTGTGAAAAAGCTGAAGGAGGAGGAGGTGCTGCCGGAGCCGAAGAAGGAGAAGGAGAAGGACCGCGTGATTGTGATTTCGGAGAAGGAAGACTTCGATTCGGAGGGTGAAAGGGAGGAAGAAGGAGAGAACAAAGCTATGATGGCTGACGATAGTGGTGGCTTGAGTGCTAACAAGGTTGCTGGGCAAGAAGAAGAGAACAGTACGACGCCATTTCCAGAAAAGGTATCCGAAAATTTGCGCCTTTATTTCAGTTGGGTCGATGCTGGTTCTGATGAATTGTGTTCCTTATTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 ko04392 map04011 map04392

Pfam Domains

Protein Families

Pkinase

Protein Analysis

140

Amino Acids

15.9

Weight (kDa)

4.72

Isoelectric Point (pI)

50.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002545)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02130 FvH4_4g19090 FvH4_4g19090 FvH4_4g19090 FvH4_4g19090
malus_domestica	MD02G1308900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0316701 RchiOBHm_Chr1g0322201 RchiOBHm_Chr1g0331421
rosa_laevigata	RLG00000001007 RLG00000015282 RLG00000018939 RLG00000021189 RLG00000022243 RLG00000026167 RLG00000032388
rosa_multiflora	Rmu_sc0002667.1_g000001 Rmu_sc0005467.1_g000011 Rmu_sc0006942.1_g000001 Rmu_sc0007199.1_g000009 Rmu_sc0011314.1_g000010
rosa_roxburghii	Rroxscaffold_6G00406050 Rroxscaffold_7G00160900
rosa_samantha	Rh1AG023400 Rh1CG020200 Rh1CG022200 Rh1DG017900 Rh1DG020300 Rh1DG020900 Rh2AG275200 Rh2BG437500 Rh3DG271900 Rh4BG003200 Rh4BG137900 Rh4CG142900 Rh4DG257100 Rh5AG116000 Rh6CG275000 Rh7DG386000
rosa_wichuraiana	Rw1G001510 Rw1G001710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	186
AciI	CCGC	2 cut(s)	55, 184
AcsI	RAATTY	1 cut(s)	355
AcuI	CTGAAG	1 cut(s)	155
AcyI	GRCGYC	1 cut(s)	329
AfaI	GTAC	1 cut(s)	325
AluBI	AGCT	4 cut(s)	13, 72, 133, 257
AluI	AGCT	4 cut(s)	13, 72, 133, 257
Alw21I	GWGCWC	1 cut(s)	15
AoxI	GGCC	1 cut(s)	104
ApeKI	GCWGC	1 cut(s)	151
ApoI	RAATTY	1 cut(s)	355
AspLEI	GCGC	1 cut(s)	363
AspS9I	GGNCC	1 cut(s)	181
AsuHPI	GGTGA	2 cut(s)	112, 239
AvaII	GGWCC	1 cut(s)	181
BanII	GRGCYC	1 cut(s)	15
BbsI	GAAGAC	1 cut(s)	216
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	1 cut(s)	138
BccI	CCATC	1 cut(s)	256
BciVI	GTATCC	1 cut(s)	358
BfuI	GTATCC	1 cut(s)	358
BisI	GCNGC	1 cut(s)	152
BlsI	GCNGC	1 cut(s)	153
Bme18I	GGWCC	1 cut(s)	181
BmgT120I	GGNCC	1 cut(s)	181
BmiI	GGNNCC	1 cut(s)	159
BmsI	GCATC	1 cut(s)	373
BpiI	GAAGAC	1 cut(s)	216
BpuEI	CTTGAG	1 cut(s)	304
BsaHI	GRCGYC	1 cut(s)	329
BsaJI	CCNNGG	1 cut(s)	107
BseDI	CCNNGG	1 cut(s)	107
BseMII	CTCAG	2 cut(s)	49, 82
BseRI	GAGGAG	2 cut(s)	155, 158
BseXI	GCAGC	1 cut(s)	138
BseYI	CCCAGC	1 cut(s)	302
Bsh1236I	CGCG	1 cut(s)	186
BshFI	GGCC	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	1 cut(s)	155
BsnI	GGCC	1 cut(s)	106
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp143I	GATC	1 cut(s)	85
BspACI	CCGC	2 cut(s)	55, 184
BspANI	GGCC	1 cut(s)	106
BspCNI	CTCAG	2 cut(s)	48, 81
BspFNI	CGCG	1 cut(s)	186
BspLI	GGNNCC	1 cut(s)	159
BssECI	CCNNGG	1 cut(s)	107
BssMI	GATC	1 cut(s)	85
BssNI	GRCGYC	1 cut(s)	329
Bst4CI	ACNGT	1 cut(s)	323
Bst6I	CTCTTC	1 cut(s)	309
BstACI	GRCGYC	1 cut(s)	329
BstDEI	CTNAG	2 cut(s)	35, 68
BstFNI	CGCG	1 cut(s)	186
BstHHI	GCGC	1 cut(s)	363
BstKTI	GATC	1 cut(s)	88
BstMBI	GATC	1 cut(s)	85
BstMWI	GCNNNNNNNGC	2 cut(s)	157, 263
BstUI	CGCG	1 cut(s)	186
BstV1I	GCAGC	1 cut(s)	138
BstV2I	GAAGAC	1 cut(s)	216
BsuI	GTATCC	1 cut(s)	358
BsuRI	GGCC	1 cut(s)	106
CfoI	GCGC	1 cut(s)	363
Cfr13I	GGNCC	1 cut(s)	181
CseI	GACGC	1 cut(s)	337
Csp6I	GTAC	1 cut(s)	324
CviAII	CATG	1 cut(s)	61
CviQI	GTAC	1 cut(s)	324
DdeI	CTNAG	2 cut(s)	35, 68
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
Ecl136II	GAGCTC	1 cut(s)	13
Eco24I	GRGCYC	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	181
Eco53kI	GAGCTC	1 cut(s)	13
Eco57I	CTGAAG	1 cut(s)	155
EcoICRI	GAGCTC	1 cut(s)	13
EcoT38I	GRGCYC	1 cut(s)	15
FaeI	CATG	1 cut(s)	64
FaiI	YATR	3 cut(s)	62, 81, 260
FalI	AAGNNNNNCTT	3 cut(s)	32, 197, 229
FatI	CATG	1 cut(s)	60
Fnu4HI	GCNGC	1 cut(s)	152
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	152
GlaI	GCGC	1 cut(s)	362
GluI	GCNGC	1 cut(s)	152
GsaI	CCCAGC	1 cut(s)	306
HaeIII	GGCC	1 cut(s)	106
HapII	CCGG	1 cut(s)	155
HgaI	GACGC	1 cut(s)	337
HhaI	GCGC	1 cut(s)	363
Hin1I	GRCGYC	1 cut(s)	329
Hin1II	CATG	1 cut(s)	64
Hin6I	GCGC	1 cut(s)	361
HinP1I	GCGC	1 cut(s)	361
HinfI	GANTC	2 cut(s)	90, 218
HpaII	CCGG	1 cut(s)	155
HphI	GGTGA	2 cut(s)	112, 239
Hpy188I	TCNGA	6 cut(s)	31, 38, 202, 223, 352, 394
Hpy188III	TCNNGA	1 cut(s)	338
Hpy99I	CGWCG	1 cut(s)	331
HpyAV	CCTTC	6 cut(s)	130, 160, 166, 172, 199, 236
HpyCH4III	ACNGT	1 cut(s)	323
HpyCH4V	TGCA	1 cut(s)	7
HpyF10VI	GCNNNNNNNGC	2 cut(s)	157, 263
HpyF3I	CTNAG	2 cut(s)	35, 68
Hsp92I	GRCGYC	1 cut(s)	329
Hsp92II	CATG	1 cut(s)	64
HspAI	GCGC	1 cut(s)	361
Kzo9I	GATC	1 cut(s)	85
LmnI	GCTCC	2 cut(s)	18, 157
LpnPI	CCDG	5 cut(s)	10, 168, 288, 351, 372
Lsp1109I	GCAGC	1 cut(s)	138
LweI	GCATC	1 cut(s)	373
MalI	GATC	1 cut(s)	87
MboI	GATC	1 cut(s)	85
MboII	GAAGA	5 cut(s)	175, 221, 251, 323, 326
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	2 cut(s)	355, 398
MlyI	GAGTC	1 cut(s)	99
MnlI	CCTC	9 cut(s)	44, 96, 102, 108, 133, 136, 139, 217, 229
MseI	TTAA	2 cut(s)	47, 418
MspA1I	CMGCKG	2 cut(s)	55, 72
MspI	CCGG	1 cut(s)	155
MvnI	CGCG	1 cut(s)	186
MwoI	GCNNNNNNNGC	2 cut(s)	157, 263
NdeII	GATC	1 cut(s)	85
NlaIII	CATG	1 cut(s)	64
NlaIV	GGNNCC	1 cut(s)	159
NmeAIII	GCCGAG	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	218
PkrI	GCNGC	1 cut(s)	153
PleI	GAGTC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	98
Psp124BI	GAGCTC	1 cut(s)	15
PspFI	CCCAGC	1 cut(s)	302
PspN4I	GGNNCC	1 cut(s)	159
PspPI	GGNCC	1 cut(s)	181
PvuII	CAGCTG	1 cut(s)	72
RsaI	GTAC	1 cut(s)	325
RsaNI	GTAC	1 cut(s)	324
SacI	GAGCTC	1 cut(s)	15
SaqAI	TTAA	2 cut(s)	47, 418
SatI	GCNGC	1 cut(s)	152
Sau3AI	GATC	1 cut(s)	85
Sau96I	GGNCC	1 cut(s)	181
SchI	GAGTC	1 cut(s)	99
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	9 cut(s)	15, 36, 74, 119, 135, 150, 259, 300, 348
SfaNI	GCATC	1 cut(s)	373
SinI	GGWCC	1 cut(s)	181
SmlI	CTYRAG	1 cut(s)	283
SmoI	CTYRAG	1 cut(s)	283
Sse9I	AATT	2 cut(s)	355, 398
SsiI	CCGC	2 cut(s)	55, 184
SstI	GAGCTC	1 cut(s)	15
TaaI	ACNGT	1 cut(s)	323
TaqI	TCGA	3 cut(s)	88, 216, 381
TasI	AATT	2 cut(s)	355, 398
TfiI	GAWTC	1 cut(s)	218
Tru1I	TTAA	2 cut(s)	47, 418
Tru9I	TTAA	2 cut(s)	47, 418
TseI	GCWGC	1 cut(s)	151
TspDTI	ATGAA	1 cut(s)	411
VpaK11BI	GGWCC	1 cut(s)	181
XapI	RAATTY	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.