RLG00000032388

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002545
Physical Location & Seq
Forward (+)
14297254 .. 14297638
385 bp
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UTR
Exon/CDS
Intron
RLM00000032388

Sequence Viewer

Length: 354 bp
ATGTCCATGACTCTCAAAGCTTCGCAGCTGCCGAGGACGAGGTTGGCTGTGAAAAAGCTGAAGGAGGAGGAGGTGCTGCCGGAGCCGGAGAAGGAGAAGGAGAAGGAGAAGGACCGCGTGATTGTGATTTCGGAGAAGGAAGACTCCGATTCGGAGGGTGAAAGGGAGGAAGAAGAAGGAGAGAACAAAGCTGTGATGGCTGACGATAGTGGTGGCTTGAGTGCTAACAAGGTTGCTGGGCAAGAAGAAGAGAATAGTACGACGCCGTTTCCAGAAAAGGTATCCGAAAATTTGCGCTTGTATTTCAGTTGGGTCGATGCTGGTTCTGATGAATTGTGTTCCTTATTTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04392 map04011 map04392
Pfam Domains
Protein Families
Pkinase

Protein Analysis

118

Amino Acids

13.14

Weight (kDa)

4.49

Isoelectric Point (pI)

58.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 117
AciI CCGC 1 cut(s) 115
AcsI RAATTY 1 cut(s) 289
AcuI CTGAAG 1 cut(s) 80
AcyI GRCGYC 1 cut(s) 263
AfaI GTAC 1 cut(s) 259
AluBI AGCT 4 cut(s) 20, 28, 58, 191
AluI AGCT 4 cut(s) 20, 28, 58, 191
ApeKI GCWGC 3 cut(s) 25, 28, 76
ApoI RAATTY 1 cut(s) 289
AspLEI GCGC 1 cut(s) 297
AspS9I GGNCC 1 cut(s) 112
AsuHPI GGTGA 1 cut(s) 170
AvaII GGWCC 1 cut(s) 112
BbsI GAAGAC 1 cut(s) 147
BbvI GCAGC 3 cut(s) 15, 37, 63
BccI CCATC 1 cut(s) 190
BceAI ACGGC 1 cut(s) 250
BciVI GTATCC 1 cut(s) 292
BfuI GTATCC 1 cut(s) 292
BisI GCNGC 3 cut(s) 26, 29, 77
BlsI GCNGC 3 cut(s) 27, 30, 78
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 1 cut(s) 84
BmsI GCATC 1 cut(s) 307
BpiI GAAGAC 1 cut(s) 147
BpuEI CTTGAG 1 cut(s) 238
BsaHI GRCGYC 1 cut(s) 263
BsaJI CCNNGG 1 cut(s) 32
BseDI CCNNGG 1 cut(s) 32
BseRI GAGGAG 2 cut(s) 80, 83
BseXI GCAGC 3 cut(s) 15, 37, 63
BseYI CCCAGC 1 cut(s) 236
Bsh1236I CGCG 1 cut(s) 117
BsiSI CCGG 2 cut(s) 80, 86
BspACI CCGC 1 cut(s) 115
BspFNI CGCG 1 cut(s) 117
BspLI GGNNCC 1 cut(s) 84
BssECI CCNNGG 1 cut(s) 32
BssNI GRCGYC 1 cut(s) 263
Bst6I CTCTTC 1 cut(s) 243
BstACI GRCGYC 1 cut(s) 263
BstFNI CGCG 1 cut(s) 117
BstHHI GCGC 1 cut(s) 297
BstMWI GCNNNNNNNGC 2 cut(s) 82, 197
BstUI CGCG 1 cut(s) 117
BstV1I GCAGC 3 cut(s) 15, 37, 63
BstV2I GAAGAC 1 cut(s) 147
BsuI GTATCC 1 cut(s) 292
CfoI GCGC 1 cut(s) 297
Cfr13I GGNCC 1 cut(s) 112
CseI GACGC 1 cut(s) 271
Csp6I GTAC 1 cut(s) 258
CviAII CATG 1 cut(s) 7
CviJI RGCY 8 cut(s) 20, 28, 47, 58, 85, 191, 200, 216
CviKI_1 RGCY 8 cut(s) 20, 28, 47, 58, 85, 191, 200, 216
CviQI GTAC 1 cut(s) 258
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
Eco47I GGWCC 1 cut(s) 112
Eco57I CTGAAG 1 cut(s) 80
FaeI CATG 1 cut(s) 10
FaiI YATR 1 cut(s) 8
FatI CATG 1 cut(s) 6
Fnu4HI GCNGC 3 cut(s) 26, 29, 77
Fsp4HI GCNGC 3 cut(s) 26, 29, 77
GlaI GCGC 1 cut(s) 296
GluI GCNGC 3 cut(s) 26, 29, 77
GsaI CCCAGC 1 cut(s) 240
HapII CCGG 2 cut(s) 80, 86
HgaI GACGC 1 cut(s) 271
HhaI GCGC 1 cut(s) 297
Hin1I GRCGYC 1 cut(s) 263
Hin1II CATG 1 cut(s) 10
Hin6I GCGC 1 cut(s) 295
HinP1I GCGC 1 cut(s) 295
HindIII AAGCTT 1 cut(s) 18
HinfI GANTC 3 cut(s) 10, 143, 149
HpaII CCGG 2 cut(s) 80, 86
HphI GGTGA 1 cut(s) 170
Hpy188I TCNGA 5 cut(s) 133, 148, 154, 286, 328
Hpy188III TCNNGA 1 cut(s) 272
Hpy99I CGWCG 1 cut(s) 265
HpyAV CCTTC 7 cut(s) 55, 85, 91, 97, 103, 130, 170
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 197
Hsp92I GRCGYC 1 cut(s) 263
Hsp92II CATG 1 cut(s) 10
HspAI GCGC 1 cut(s) 295
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 5 cut(s) 93, 99, 222, 285, 306
Lsp1109I GCAGC 3 cut(s) 15, 37, 63
LweI GCATC 1 cut(s) 307
MboII GAAGA 5 cut(s) 152, 182, 185, 257, 260
MluCI AATT 2 cut(s) 289, 332
MlyI GAGTC 2 cut(s) 4, 137
MnlI CCTC 7 cut(s) 27, 33, 58, 61, 64, 148, 160
MseI TTAA 1 cut(s) 352
MspA1I CMGCKG 1 cut(s) 28
MspI CCGG 2 cut(s) 80, 86
MvnI CGCG 1 cut(s) 117
MwoI GCNNNNNNNGC 2 cut(s) 82, 197
NlaIII CATG 1 cut(s) 10
NlaIV GGNNCC 1 cut(s) 84
NmeAIII GCCGAG 1 cut(s) 57
PcsI WCGNNNNNNNCGW 1 cut(s) 29
PfeI GAWTC 1 cut(s) 149
PkrI GCNGC 3 cut(s) 27, 30, 78
PleI GAGTC 2 cut(s) 4, 137
PpsI GAGTC 2 cut(s) 4, 137
PspFI CCCAGC 1 cut(s) 236
PspN4I GGNNCC 1 cut(s) 84
PspPI GGNCC 1 cut(s) 112
PvuII CAGCTG 1 cut(s) 28
RsaI GTAC 1 cut(s) 259
RsaNI GTAC 1 cut(s) 258
SaqAI TTAA 1 cut(s) 352
SatI GCNGC 3 cut(s) 26, 29, 77
Sau96I GGNCC 1 cut(s) 112
SchI GAGTC 2 cut(s) 4, 137
SetI ASST 8 cut(s) 22, 30, 44, 60, 75, 193, 234, 282
SfaNI GCATC 1 cut(s) 307
SinI GGWCC 1 cut(s) 112
SmlI CTYRAG 1 cut(s) 217
SmoI CTYRAG 1 cut(s) 217
Sse9I AATT 2 cut(s) 289, 332
SsiI CCGC 1 cut(s) 115
TaqI TCGA 1 cut(s) 315
TasI AATT 2 cut(s) 289, 332
TfiI GAWTC 1 cut(s) 149
Tru1I TTAA 1 cut(s) 352
Tru9I TTAA 1 cut(s) 352
TseI GCWGC 3 cut(s) 25, 28, 76
TspDTI ATGAA 1 cut(s) 345
VpaK11BI GGWCC 1 cut(s) 112
XapI RAATTY 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.