Rroxscaffold_6G00406050

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0002545
Physical Location & Seq
Reverse (-)
28489614 .. 28490538
925 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00406050.1

Sequence Viewer

Length: 324 bp
ATGCTTCTGAGCAAAGTGCAGAATTGCTTCAAGCTTCACTCGTTCGGTGCTTCGCATCGGGCCGGTCTTGAGATTCTAACGGCCGAGGACGAGGTTGGCTGTGAAAAAGTCGAAGGAGGAGGAGGAGGTGCTGCCGGAGCCGGAGAAGGAAAAGGAGAAGGACCGCGTGAATGTGATTTCGGAGAAAGAAGACTCGATTCGGAGGGTGAAAGGGAGGAAGAAGAAGAAGAGAACAAAGCTGTGATGGTCGACGATAGTGGTGGCTTGAGTGCTAACAAGGTTGCTGGGCAAGAAGAAGAGAACAAGACGACGCCGTTTCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04392 map04011 map04392
Pfam Domains
Protein Families
Pkinase

Protein Analysis

107

Amino Acids

11.29

Weight (kDa)

4.48

Isoelectric Point (pI)

55.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 249
AccII CGCG 1 cut(s) 166
AciI CCGC 1 cut(s) 164
AcoI YGGCCR 1 cut(s) 81
AcyI GRCGYC 1 cut(s) 311
AgsI TTSAA 1 cut(s) 31
AluBI AGCT 2 cut(s) 34, 239
AluI AGCT 2 cut(s) 34, 239
AoxI GGCC 2 cut(s) 60, 81
ApeKI GCWGC 1 cut(s) 131
Asp700I GAANNNNTTC 1 cut(s) 26
AspS9I GGNCC 2 cut(s) 60, 161
AsuHPI GGTGA 1 cut(s) 218
AvaII GGWCC 1 cut(s) 161
BbsI GAAGAC 1 cut(s) 196
BbvI GCAGC 1 cut(s) 118
BccI CCATC 1 cut(s) 238
BceAI ACGGC 2 cut(s) 96, 298
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
Bme18I GGWCC 1 cut(s) 161
BmgT120I GGNCC 2 cut(s) 60, 161
BmiI GGNNCC 1 cut(s) 139
BmsI GCATC 1 cut(s) 64
BpiI GAAGAC 1 cut(s) 196
BpuEI CTTGAG 2 cut(s) 89, 286
BsaHI GRCGYC 1 cut(s) 311
BsaJI CCNNGG 1 cut(s) 84
Bse118I RCCGGY 1 cut(s) 62
BseDI CCNNGG 1 cut(s) 84
BseRI GAGGAG 3 cut(s) 132, 135, 138
BseX3I CGGCCG 1 cut(s) 81
BseXI GCAGC 1 cut(s) 118
BseYI CCCAGC 1 cut(s) 284
BsgI GTGCAG 1 cut(s) 38
Bsh1236I CGCG 1 cut(s) 166
Bsh1285I CGRYCG 1 cut(s) 84
BshFI GGCC 2 cut(s) 62, 83
BsiEI CGRYCG 1 cut(s) 84
BsiSI CCGG 3 cut(s) 63, 135, 141
BsnI GGCC 2 cut(s) 62, 83
BspACI CCGC 1 cut(s) 164
BspANI GGCC 2 cut(s) 62, 83
BspFNI CGCG 1 cut(s) 166
BspLI GGNNCC 1 cut(s) 139
BsrFI RCCGGY 1 cut(s) 62
BssAI RCCGGY 1 cut(s) 62
BssECI CCNNGG 1 cut(s) 84
BssNI GRCGYC 1 cut(s) 311
Bst6I CTCTTC 2 cut(s) 222, 291
BstACI GRCGYC 1 cut(s) 311
BstDEI CTNAG 1 cut(s) 8
BstFNI CGCG 1 cut(s) 166
BstMCI CGRYCG 1 cut(s) 84
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstUI CGCG 1 cut(s) 166
BstV1I GCAGC 1 cut(s) 118
BstV2I GAAGAC 1 cut(s) 196
BstZI CGGCCG 1 cut(s) 81
BsuRI GGCC 2 cut(s) 62, 83
Cfr10I RCCGGY 1 cut(s) 62
Cfr13I GGNCC 2 cut(s) 60, 161
CseI GACGC 1 cut(s) 319
CviJI RGCY 7 cut(s) 34, 62, 83, 99, 140, 239, 264
CviKI_1 RGCY 7 cut(s) 34, 62, 83, 99, 140, 239, 264
DdeI CTNAG 1 cut(s) 8
EaeI YGGCCR 1 cut(s) 81
EagI CGGCCG 1 cut(s) 81
Eam1104I CTCTTC 2 cut(s) 222, 291
EarI CTCTTC 2 cut(s) 222, 291
EclXI CGGCCG 1 cut(s) 81
Eco47I GGWCC 1 cut(s) 161
Eco52I CGGCCG 1 cut(s) 81
FblI GTMKAC 1 cut(s) 249
Fnu4HI GCNGC 1 cut(s) 132
Fsp4HI GCNGC 1 cut(s) 132
GluI GCNGC 1 cut(s) 132
GsaI CCCAGC 1 cut(s) 288
HaeIII GGCC 2 cut(s) 62, 83
HapII CCGG 3 cut(s) 63, 135, 141
HgaI GACGC 1 cut(s) 319
Hin1I GRCGYC 1 cut(s) 311
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HindIII AAGCTT 1 cut(s) 32
HinfI GANTC 3 cut(s) 73, 192, 197
HpaII CCGG 3 cut(s) 63, 135, 141
HphI GGTGA 1 cut(s) 218
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 3 cut(s) 9, 182, 202
Hpy188III TCNNGA 1 cut(s) 68
Hpy8I GTNNAC 1 cut(s) 250
Hpy99I CGWCG 2 cut(s) 254, 313
HpyAV CCTTC 3 cut(s) 107, 140, 152
HpyCH4V TGCA 1 cut(s) 19
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 1 cut(s) 8
Hsp92I GRCGYC 1 cut(s) 311
LmnI GCTCC 1 cut(s) 137
LpnPI CCDG 4 cut(s) 76, 148, 154, 270
Lsp1109I GCAGC 1 cut(s) 118
LweI GCATC 1 cut(s) 64
MboII GAAGA 7 cut(s) 201, 230, 233, 236, 239, 305, 308
MluCI AATT 1 cut(s) 22
MlyI GAGTC 1 cut(s) 186
MnlI CCTC 8 cut(s) 79, 85, 110, 113, 116, 119, 196, 208
MroXI GAANNNNTTC 1 cut(s) 26
MspI CCGG 3 cut(s) 63, 135, 141
MvnI CGCG 1 cut(s) 166
MwoI GCNNNNNNNGC 1 cut(s) 137
NlaIV GGNNCC 1 cut(s) 139
NmeAIII GCCGAG 1 cut(s) 109
PcsI WCGNNNNNNNCGW 1 cut(s) 317
PdmI GAANNNNTTC 1 cut(s) 26
PfeI GAWTC 2 cut(s) 73, 197
PkrI GCNGC 1 cut(s) 133
PleI GAGTC 1 cut(s) 186
PpsI GAGTC 1 cut(s) 186
PspFI CCCAGC 1 cut(s) 284
PspN4I GGNNCC 1 cut(s) 139
PspPI GGNCC 2 cut(s) 60, 161
SalI GTCGAC 1 cut(s) 248
SatI GCNGC 1 cut(s) 132
Sau96I GGNCC 2 cut(s) 60, 161
SchI GAGTC 1 cut(s) 186
SetI ASST 5 cut(s) 36, 96, 130, 241, 282
SfaNI GCATC 1 cut(s) 64
SinI GGWCC 1 cut(s) 161
SmlI CTYRAG 2 cut(s) 68, 265
SmoI CTYRAG 2 cut(s) 68, 265
Sse9I AATT 1 cut(s) 22
SsiI CCGC 1 cut(s) 164
TaqI TCGA 3 cut(s) 111, 195, 249
TasI AATT 1 cut(s) 22
TfiI GAWTC 2 cut(s) 73, 197
TseI GCWGC 1 cut(s) 131
TspGWI ACGGA 1 cut(s) 309
VpaK11BI GGWCC 1 cut(s) 161
XmiI GTMKAC 1 cut(s) 249
XmnI GAANNNNTTC 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.