Rh1CG020200

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0002545
Physical Location & Seq
Forward (+)
3366396 .. 3379206
12811 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG020200.1

Sequence Viewer

Length: 1017 bp
ATGGAGAATGGAGGTTTTGAAATTAGGCGGATGAAAACGATGCGTTTTGGTTTTATACGGGCTCTGCTTCTTGTTCTCGTGTTCGCGAGGTCCGCAGCTAAGATTAATTCCAAGACCTTGAGAAGGTCTATTGGGATGAAAAGTAGCATTGTGTTTGGGGATTTGAAGATCATCATATCTCTTTGCCATACTATTTGGAGTGCTGCAGTCGCACCTAGTGTCAAAAGGAGCCCAAGGACCTACCAGCATGCTTCCTCCGCCACCAGAGTCGCAGATGTCTCTGCCATCAACGCCACCGAGAGCTGGGTACGGAAAGGAGCCCAAAAGCAACACAACGTTTACCCCACTAATTCTCCACCAGTAGCCATAGTCGCCGAAATCATCAGCCTCTCATCATCCCATGCATGTAATGGCGCACCTCCAACTGCCGCACAGATCACGCCATTGCCGAGATTTTTCCTCGCTCTCCGTTGTAAATATAATGATCGAGTCGTTGTGGTGAGGCCGAGGACAAGGTTGGCTGTGAAAAAGCTGAAGGAGGAGGAGGTGCTGCAGGAGCCGGAGGAGAAGGAGAAGGACCGCGTGATTGTGATTTCGGAGAAGGAAGACTCCGATTTGGAGGGTGAAAGGGAGGAAGAAGAAGAAGAAGAGAACAAAGTTGTGATGGCTGACGATAGTGGTGGCTTGAGTGCTAACAAGGTTGCTGGGCAAGAAGAAGAGAACAGTACGACGCCGTTTCCAGAAAAGGATGAAGAACCAAATGACGGCAAGATCAGTAAACTGTGTGAATATGCCTCAAAAACTCCTCTCCGTATTCCAAAGATCACATCTACTCTGGAGCAAAGATGTTACAAGGACTTGAGAACTGAGAACTTCCACTCTGTGAAAGTGGTTATGTGTATCTACCGGAAGTTGTTGATTTCTTTTAAGGATCAAATGCCATTGTTTGCAAGTAGTCCACTTAGCATTGCTCAAATTCTGCTTGATCAAACACGACATGATGAAATACGTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

338

Amino Acids

38.0

Weight (kDa)

8.77

Isoelectric Point (pI)

54.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EFR3_ARM PF21052 269 - 333 2.3e-08 EFR3, armadillo repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 86, 582
AciI CCGC 5 cut(s) 28, 93, 258, 429, 580
AclI AACGTT 1 cut(s) 336
AclWI GGATC 1 cut(s) 939
AcsI RAATTY 1 cut(s) 975
AcuI CTGAAG 1 cut(s) 554
AcyI GRCGYC 1 cut(s) 731
AdeI CACNNNGTG 2 cut(s) 218, 883
AfaI GTAC 2 cut(s) 309, 727
AfiI CCNNNNNNNGG 3 cut(s) 123, 303, 764
AgsI TTSAA 2 cut(s) 20, 166
AluBI AGCT 3 cut(s) 98, 303, 532
AluI AGCT 3 cut(s) 98, 303, 532
Alw26I GTCTC 1 cut(s) 283
AlwI GGATC 1 cut(s) 939
AoxI GGCC 1 cut(s) 503
ApeKI GCWGC 3 cut(s) 95, 203, 550
ApoI RAATTY 1 cut(s) 975
AseI ATTAAT 1 cut(s) 105
AspLEI GCGC 1 cut(s) 416
AspS9I GGNCC 3 cut(s) 90, 237, 577
AsuHPI GGTGA 2 cut(s) 511, 635
AvaII GGWCC 3 cut(s) 90, 237, 577
BanII GRGCYC 3 cut(s) 64, 233, 322
BauI CACGAG 1 cut(s) 77
BbsI GAAGAC 1 cut(s) 612
BbvI GCAGC 3 cut(s) 107, 190, 537
BccI CCATC 2 cut(s) 293, 658
BceAI ACGGC 2 cut(s) 718, 781
BclI TGATCA 1 cut(s) 985
BcoDI GTCTC 1 cut(s) 283
BfaI CTAG 1 cut(s) 216
BfmI CTRYAG 2 cut(s) 204, 551
BisI GCNGC 4 cut(s) 96, 204, 429, 551
BlsI GCNGC 4 cut(s) 97, 205, 430, 552
Bme18I GGWCC 3 cut(s) 90, 237, 577
BmgT120I GGNCC 3 cut(s) 90, 237, 577
BmiI GGNNCC 3 cut(s) 230, 319, 558
BmsI GCATC 1 cut(s) 30
BpiI GAAGAC 1 cut(s) 612
BpmI CTGGAG 1 cut(s) 857
BpuEI CTTGAG 3 cut(s) 139, 706, 880
BsaAI YACGTR 1 cut(s) 1010
BsaHI GRCGYC 1 cut(s) 731
BsaJI CCNNGG 2 cut(s) 233, 506
BsaWI WCCGGW 1 cut(s) 906
BsaXI ACNNNNNCTCC 2 cut(s) 337, 367
Bsc4I CCNNNNNNNGG 3 cut(s) 123, 303, 764
Bse1I ACTGG 1 cut(s) 359
Bse3DI GCAATG 2 cut(s) 443, 966
BseDI CCNNGG 2 cut(s) 233, 506
BseGI GGATG 4 cut(s) 36, 141, 395, 754
BseLI CCNNNNNNNGG 3 cut(s) 123, 303, 764
BseMI GCAATG 2 cut(s) 443, 966
BseMII CTCAG 1 cut(s) 858
BseNI ACTGG 1 cut(s) 359
BseRI GAGGAG 4 cut(s) 554, 557, 578, 795
BseXI GCAGC 3 cut(s) 107, 190, 537
BseYI CCCAGC 2 cut(s) 303, 704
Bsh1236I CGCG 2 cut(s) 86, 582
BshFI GGCC 1 cut(s) 505
BsiSI CCGG 2 cut(s) 560, 907
BslI CCNNNNNNNGG 3 cut(s) 123, 303, 764
BsmAI GTCTC 1 cut(s) 283
BsnI GGCC 1 cut(s) 505
Bsp1286I GDGCHC 3 cut(s) 64, 233, 322
Bsp143I GATC 7 cut(s) 168, 435, 484, 771, 822, 931, 985
Bsp68I TCGCGA 1 cut(s) 86
BspACI CCGC 5 cut(s) 28, 93, 258, 429, 580
BspANI GGCC 1 cut(s) 505
BspCNI CTCAG 1 cut(s) 859
BspFNI CGCG 2 cut(s) 86, 582
BspLI GGNNCC 3 cut(s) 230, 319, 558
BspMAI CTGCAG 2 cut(s) 208, 555
BspPI GGATC 1 cut(s) 939
BsrDI GCAATG 2 cut(s) 443, 966
BsrI ACTGG 1 cut(s) 359
BssECI CCNNGG 2 cut(s) 233, 506
BssMI GATC 7 cut(s) 168, 435, 484, 771, 822, 931, 985
BssNI GRCGYC 1 cut(s) 731
BssSI CACGAG 1 cut(s) 77
BssT1I CCWWGG 1 cut(s) 233
Bst2BI CACGAG 1 cut(s) 77
Bst4CI ACNGT 2 cut(s) 725, 783
Bst6I CTCTTC 2 cut(s) 642, 711
BstACI GRCGYC 1 cut(s) 731
BstBAI YACGTR 1 cut(s) 1010
BstC8I GCNNGC 1 cut(s) 249
BstDEI CTNAG 3 cut(s) 99, 867, 962
BstENI CCTNNNNNAGG 1 cut(s) 121
BstF5I GGATG 4 cut(s) 36, 141, 395, 754
BstFNI CGCG 2 cut(s) 86, 582
BstHHI GCGC 1 cut(s) 416
BstKTI GATC 7 cut(s) 171, 438, 487, 774, 825, 934, 988
BstMAI GTCTC 1 cut(s) 283
BstMBI GATC 7 cut(s) 168, 435, 484, 771, 822, 931, 985
BstMWI GCNNNNNNNGC 6 cut(s) 92, 209, 257, 290, 371, 556
BstNSI RCATGY 2 cut(s) 251, 408
BstSFI CTRYAG 2 cut(s) 204, 551
BstSNI TACGTA 1 cut(s) 1010
BstUI CGCG 2 cut(s) 86, 582
BstV1I GCAGC 3 cut(s) 107, 190, 537
BstV2I GAAGAC 1 cut(s) 612
BsuRI GGCC 1 cut(s) 505
BtsCI GGATG 4 cut(s) 36, 141, 395, 754
BtuMI TCGCGA 1 cut(s) 86
Cac8I GCNNGC 1 cut(s) 249
CfoI GCGC 1 cut(s) 416
Cfr13I GGNCC 3 cut(s) 90, 237, 577
CseI GACGC 1 cut(s) 739
Csp6I GTAC 2 cut(s) 308, 726
CviAII CATG 4 cut(s) 248, 401, 405, 998
CviQI GTAC 2 cut(s) 308, 726
DdeI CTNAG 3 cut(s) 99, 867, 962
DpnI GATC 7 cut(s) 170, 437, 486, 773, 824, 933, 987
DpnII GATC 7 cut(s) 168, 435, 484, 771, 822, 931, 985
DraIII CACNNNGTG 2 cut(s) 218, 883
Eam1104I CTCTTC 2 cut(s) 642, 711
EarI CTCTTC 2 cut(s) 642, 711
EciI GGCGGA 2 cut(s) 43, 247
Eco105I TACGTA 1 cut(s) 1010
Eco130I CCWWGG 1 cut(s) 233
Eco24I GRGCYC 3 cut(s) 64, 233, 322
Eco47I GGWCC 3 cut(s) 90, 237, 577
Eco57I CTGAAG 1 cut(s) 554
EcoNI CCTNNNNNAGG 1 cut(s) 121
EcoO109I RGGNCCY 1 cut(s) 237
EcoT14I CCWWGG 1 cut(s) 233
EcoT22I ATGCAT 1 cut(s) 406
EcoT38I GRGCYC 3 cut(s) 64, 233, 322
ErhI CCWWGG 1 cut(s) 233
FaeI CATG 4 cut(s) 251, 404, 408, 1001
FatI CATG 4 cut(s) 247, 400, 404, 997
FbaI TGATCA 1 cut(s) 985
Fnu4HI GCNGC 4 cut(s) 96, 204, 429, 551
FokI GGATG 4 cut(s) 43, 148, 382, 761
FriOI GRGCYC 3 cut(s) 64, 233, 322
Fsp4HI GCNGC 4 cut(s) 96, 204, 429, 551
FspBI CTAG 1 cut(s) 216
GlaI GCGC 1 cut(s) 415
GluI GCNGC 4 cut(s) 96, 204, 429, 551
GsaI CCCAGC 2 cut(s) 307, 708
GsuI CTGGAG 1 cut(s) 857
HaeIII GGCC 1 cut(s) 505
HapII CCGG 2 cut(s) 560, 907
HgaI GACGC 1 cut(s) 739
HhaI GCGC 1 cut(s) 416
Hin1I GRCGYC 1 cut(s) 731
Hin1II CATG 4 cut(s) 251, 404, 408, 1001
Hin6I GCGC 1 cut(s) 414
HinP1I GCGC 1 cut(s) 414
HinfI GANTC 3 cut(s) 267, 489, 608
HpaII CCGG 2 cut(s) 560, 907
HphI GGTGA 2 cut(s) 511, 635
Hpy166II GTNNAC 3 cut(s) 340, 779, 959
Hpy188I TCNGA 2 cut(s) 598, 613
Hpy188III TCNNGA 3 cut(s) 85, 740, 836
Hpy8I GTNNAC 3 cut(s) 340, 779, 959
Hpy99I CGWCG 1 cut(s) 733
HpyAV CCTTC 5 cut(s) 117, 529, 562, 568, 595
HpyCH4III ACNGT 2 cut(s) 725, 783
HpyCH4IV ACGT 2 cut(s) 336, 1009
HpyCH4V TGCA 4 cut(s) 206, 404, 553, 950
HpyF10VI GCNNNNNNNGC 6 cut(s) 92, 209, 257, 290, 371, 556
HpyF3I CTNAG 3 cut(s) 99, 867, 962
HpySE526I ACGT 2 cut(s) 336, 1009
Hsp92I GRCGYC 1 cut(s) 731
Hsp92II CATG 4 cut(s) 251, 404, 408, 1001
HspAI GCGC 1 cut(s) 414
Ksp22I TGATCA 1 cut(s) 985
Kzo9I GATC 7 cut(s) 168, 435, 484, 771, 822, 931, 985
LmnI GCTCC 4 cut(s) 228, 317, 556, 838
Lsp1109I GCAGC 3 cut(s) 107, 190, 537
LweI GCATC 1 cut(s) 30
MaeI CTAG 1 cut(s) 216
MaeII ACGT 2 cut(s) 336, 1009
MaeIII GTNAC 1 cut(s) 848
MalI GATC 7 cut(s) 170, 437, 486, 773, 824, 933, 987
MboI GATC 7 cut(s) 168, 435, 484, 771, 822, 931, 985
MhlI GDGCHC 3 cut(s) 64, 233, 322
MluCI AATT 4 cut(s) 21, 106, 349, 975
MlyI GAGTC 3 cut(s) 276, 498, 602
MmeI TCCRAC 1 cut(s) 446
Mph1103I ATGCAT 1 cut(s) 406
MseI TTAA 3 cut(s) 105, 927, 1015
MspI CCGG 2 cut(s) 560, 907
MvnI CGCG 2 cut(s) 86, 582
MwoI GCNNNNNNNGC 6 cut(s) 92, 209, 257, 290, 371, 556
NdeII GATC 7 cut(s) 168, 435, 484, 771, 822, 931, 985
NlaIII CATG 4 cut(s) 251, 404, 408, 1001
NlaIV GGNNCC 3 cut(s) 230, 319, 558
NmeAIII GCCGAG 2 cut(s) 474, 531
NruI TCGCGA 1 cut(s) 86
NsiI ATGCAT 1 cut(s) 406
NspI RCATGY 2 cut(s) 251, 408
PaeI GCATGC 1 cut(s) 251
PcsI WCGNNNNNNNCGW 1 cut(s) 446
PkrI GCNGC 4 cut(s) 97, 205, 430, 552
PleI GAGTC 3 cut(s) 275, 497, 602
PpsI GAGTC 3 cut(s) 275, 497, 602
Ppu21I YACGTR 1 cut(s) 1010
PpuMI RGGWCCY 1 cut(s) 237
PshBI ATTAAT 1 cut(s) 105
Psp1406I AACGTT 1 cut(s) 336
Psp5II RGGWCCY 1 cut(s) 237
PspFI CCCAGC 2 cut(s) 303, 704
PspN4I GGNNCC 3 cut(s) 230, 319, 558
PspPI GGNCC 3 cut(s) 90, 237, 577
PspPPI RGGWCCY 1 cut(s) 237
PstI CTGCAG 2 cut(s) 208, 555
RruI TCGCGA 1 cut(s) 86
RsaI GTAC 2 cut(s) 309, 727
RsaNI GTAC 2 cut(s) 308, 726
SaqAI TTAA 3 cut(s) 105, 927, 1015
SatI GCNGC 4 cut(s) 96, 204, 429, 551
Sau3AI GATC 7 cut(s) 168, 435, 484, 771, 822, 931, 985
Sau96I GGNCC 3 cut(s) 90, 237, 577
SchI GAGTC 3 cut(s) 276, 498, 602
SduI GDGCHC 3 cut(s) 64, 233, 322
SfaNI GCATC 1 cut(s) 30
SfcI CTRYAG 2 cut(s) 204, 551
SinI GGWCC 3 cut(s) 90, 237, 577
SmlI CTYRAG 3 cut(s) 118, 685, 859
SmoI CTYRAG 3 cut(s) 118, 685, 859
SnaBI TACGTA 1 cut(s) 1010
SphI GCATGC 1 cut(s) 251
Sse9I AATT 4 cut(s) 21, 106, 349, 975
SsiI CCGC 5 cut(s) 28, 93, 258, 429, 580
SspMI CTAG 1 cut(s) 216
StyI CCWWGG 1 cut(s) 233
TaaI ACNGT 2 cut(s) 725, 783
TaiI ACGT 2 cut(s) 339, 1012
TaqI TCGA 1 cut(s) 487
TasI AATT 4 cut(s) 21, 106, 349, 975
TauI GCSGC 1 cut(s) 431
Tru1I TTAA 3 cut(s) 105, 927, 1015
Tru9I TTAA 3 cut(s) 105, 927, 1015
TseI GCWGC 3 cut(s) 95, 203, 550
TspDTI ATGAA 4 cut(s) 47, 152, 765, 1017
TspGWI ACGGA 3 cut(s) 325, 458, 800
VpaK11BI GGWCC 3 cut(s) 90, 237, 577
VspI ATTAAT 1 cut(s) 105
XagI CCTNNNNNAGG 1 cut(s) 121
XapI RAATTY 1 cut(s) 975
XceI RCATGY 2 cut(s) 251, 408
XcmI CCANNNNNNNNNTGG 1 cut(s) 407
XspI CTAG 1 cut(s) 216
Zsp2I ATGCAT 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.