RLG00000001007

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0002545
Physical Location & Seq
Reverse (-)
9167642 .. 9169094
1453 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001007

Sequence Viewer

Length: 375 bp
ATGGAAAAGATTGAAGATAAGCACTGTAAATATAATGATCGAGTCGTTGTGGTGAGGCCGAGGACGAGGTTGGCTGTGAAAAAGCTGAAGGAGGAGGAGGTGCTGCCGGAGCCGGAGAAGGAGAAGGAGAAGGACCGCGTGATTGTGATTTCGGAGAAGGAAGACTCCGATTCGGAGGGTGAAGGGGAGGAAGAAGAAGGAGAGAACAAAGCTGTGATGGCTGACGATAGTGGTGGCTTGAGTGCTAACAAGGTTGCTAGGCAAGAAGAAGAGAACAGTACGACGCCGTTTCCAGAAAAGGTATACGAAAATTTGCGCCTTTATTTCAGTTGGGTCGATGCTGGTTCTGATGAATTGTGTTCCTTATTTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04392 map04011 map04392
Pfam Domains
Protein Families
Pkinase

Protein Analysis

125

Amino Acids

14.21

Weight (kDa)

4.6

Isoelectric Point (pI)

52.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 303
AccII CGCG 1 cut(s) 138
AciI CCGC 1 cut(s) 136
AcsI RAATTY 1 cut(s) 310
AcuI CTGAAG 1 cut(s) 107
AcyI GRCGYC 1 cut(s) 284
AfaI GTAC 1 cut(s) 280
AgsI TTSAA 1 cut(s) 14
AluBI AGCT 2 cut(s) 85, 212
AluI AGCT 2 cut(s) 85, 212
AoxI GGCC 1 cut(s) 56
ApeKI GCWGC 1 cut(s) 103
ApoI RAATTY 1 cut(s) 310
AspLEI GCGC 1 cut(s) 318
AspS9I GGNCC 1 cut(s) 133
AsuHPI GGTGA 2 cut(s) 64, 191
AvaII GGWCC 1 cut(s) 133
BbsI GAAGAC 1 cut(s) 168
BbvI GCAGC 1 cut(s) 90
BccI CCATC 1 cut(s) 211
BceAI ACGGC 1 cut(s) 271
BfaI CTAG 1 cut(s) 258
BisI GCNGC 1 cut(s) 104
BlsI GCNGC 1 cut(s) 105
Bme18I GGWCC 1 cut(s) 133
BmgT120I GGNCC 1 cut(s) 133
BmiI GGNNCC 1 cut(s) 111
BmsI GCATC 1 cut(s) 328
BpiI GAAGAC 1 cut(s) 168
BpuEI CTTGAG 1 cut(s) 259
BsaHI GRCGYC 1 cut(s) 284
BsaJI CCNNGG 1 cut(s) 59
BseDI CCNNGG 1 cut(s) 59
BseRI GAGGAG 2 cut(s) 107, 110
BseXI GCAGC 1 cut(s) 90
Bsh1236I CGCG 1 cut(s) 138
BshFI GGCC 1 cut(s) 58
BsiSI CCGG 2 cut(s) 107, 113
BsnI GGCC 1 cut(s) 58
Bsp143I GATC 1 cut(s) 37
BspACI CCGC 1 cut(s) 136
BspANI GGCC 1 cut(s) 58
BspFNI CGCG 1 cut(s) 138
BspLI GGNNCC 1 cut(s) 111
BssECI CCNNGG 1 cut(s) 59
BssMI GATC 1 cut(s) 37
BssNAI GTATAC 1 cut(s) 304
BssNI GRCGYC 1 cut(s) 284
Bst1107I GTATAC 1 cut(s) 304
Bst4CI ACNGT 2 cut(s) 26, 278
Bst6I CTCTTC 1 cut(s) 264
BstACI GRCGYC 1 cut(s) 284
BstFNI CGCG 1 cut(s) 138
BstHHI GCGC 1 cut(s) 318
BstKTI GATC 1 cut(s) 40
BstMBI GATC 1 cut(s) 37
BstMWI GCNNNNNNNGC 2 cut(s) 109, 218
BstUI CGCG 1 cut(s) 138
BstV1I GCAGC 1 cut(s) 90
BstV2I GAAGAC 1 cut(s) 168
BstZ17I GTATAC 1 cut(s) 304
BsuRI GGCC 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 22
CfoI GCGC 1 cut(s) 318
Cfr13I GGNCC 1 cut(s) 133
CseI GACGC 1 cut(s) 292
Csp6I GTAC 1 cut(s) 279
CviJI RGCY 7 cut(s) 58, 74, 85, 112, 212, 221, 237
CviKI_1 RGCY 7 cut(s) 58, 74, 85, 112, 212, 221, 237
CviQI GTAC 1 cut(s) 279
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
Eco47I GGWCC 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 107
FaiI YATR 2 cut(s) 33, 304
FblI GTMKAC 1 cut(s) 303
Fnu4HI GCNGC 1 cut(s) 104
Fsp4HI GCNGC 1 cut(s) 104
FspBI CTAG 1 cut(s) 258
GlaI GCGC 1 cut(s) 317
GluI GCNGC 1 cut(s) 104
HaeIII GGCC 1 cut(s) 58
HapII CCGG 2 cut(s) 107, 113
HgaI GACGC 1 cut(s) 292
HhaI GCGC 1 cut(s) 318
Hin1I GRCGYC 1 cut(s) 284
Hin6I GCGC 1 cut(s) 316
HinP1I GCGC 1 cut(s) 316
HinfI GANTC 3 cut(s) 42, 164, 170
HpaII CCGG 2 cut(s) 107, 113
HphI GGTGA 2 cut(s) 64, 191
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 4 cut(s) 154, 169, 175, 349
Hpy188III TCNNGA 1 cut(s) 293
Hpy8I GTNNAC 1 cut(s) 304
Hpy99I CGWCG 1 cut(s) 286
HpyAV CCTTC 7 cut(s) 82, 112, 118, 124, 151, 176, 191
HpyCH4III ACNGT 2 cut(s) 26, 278
HpyF10VI GCNNNNNNNGC 2 cut(s) 109, 218
Hsp92I GRCGYC 1 cut(s) 284
HspAI GCGC 1 cut(s) 316
Kzo9I GATC 1 cut(s) 37
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 4 cut(s) 120, 126, 306, 327
Lsp1109I GCAGC 1 cut(s) 90
LweI GCATC 1 cut(s) 328
MaeI CTAG 1 cut(s) 258
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MboII GAAGA 6 cut(s) 26, 173, 203, 206, 278, 281
MluCI AATT 2 cut(s) 310, 353
MlyI GAGTC 2 cut(s) 51, 158
MnlI CCTC 8 cut(s) 48, 54, 60, 85, 88, 91, 169, 181
MseI TTAA 1 cut(s) 373
MspI CCGG 2 cut(s) 107, 113
MvnI CGCG 1 cut(s) 138
MwoI GCNNNNNNNGC 2 cut(s) 109, 218
NdeII GATC 1 cut(s) 37
NlaIV GGNNCC 1 cut(s) 111
NmeAIII GCCGAG 1 cut(s) 84
PfeI GAWTC 1 cut(s) 170
PkrI GCNGC 1 cut(s) 105
PleI GAGTC 2 cut(s) 50, 158
PpsI GAGTC 2 cut(s) 50, 158
PspN4I GGNNCC 1 cut(s) 111
PspPI GGNCC 1 cut(s) 133
RsaI GTAC 1 cut(s) 280
RsaNI GTAC 1 cut(s) 279
SaqAI TTAA 1 cut(s) 373
SatI GCNGC 1 cut(s) 104
Sau3AI GATC 1 cut(s) 37
Sau96I GGNCC 1 cut(s) 133
SchI GAGTC 2 cut(s) 51, 158
SetI ASST 6 cut(s) 71, 87, 102, 214, 255, 303
SfaNI GCATC 1 cut(s) 328
SinI GGWCC 1 cut(s) 133
SmlI CTYRAG 1 cut(s) 238
SmoI CTYRAG 1 cut(s) 238
Sse9I AATT 2 cut(s) 310, 353
SsiI CCGC 1 cut(s) 136
SspMI CTAG 1 cut(s) 258
TaaI ACNGT 2 cut(s) 26, 278
TaqI TCGA 2 cut(s) 40, 336
TasI AATT 2 cut(s) 310, 353
TfiI GAWTC 1 cut(s) 170
Tru1I TTAA 1 cut(s) 373
Tru9I TTAA 1 cut(s) 373
TscAI CASTG 1 cut(s) 29
TseI GCWGC 1 cut(s) 103
TspDTI ATGAA 1 cut(s) 366
TspRI CASTG 1 cut(s) 29
VpaK11BI GGWCC 1 cut(s) 133
XapI RAATTY 1 cut(s) 310
XmiI GTMKAC 1 cut(s) 303
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.