RLG00000026167

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0002545
Physical Location & Seq
Forward (+)
920510 .. 921049
540 bp
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UTR
Exon/CDS
Intron
RLM00000026167

Sequence Viewer

Length: 360 bp
ATGTCCATGACTCTCAAAGCTTCGCAGCTGCCGAGGACGAGGTTGGCTGTGAAAAAGCTGAAGGAGGAGGAGGTGCTGCCGGAGCCGAAGAAGGAGAAGGAGAAGGACCGCGTGATTGTGATTTCGGAGAAGGAAGACTCCGATTCGGAGGGTGAAAGGGAGGAAGAAGGAGAGAACAAAGCTGTGATGGCTGACGATAGTGGTGGCTTGAGTGCTAACAAGGTTGCTGGGCAAGAAGAAGAGAACAGTACGACGCCATTTCCAGAAAAGGTTTTGATTGCAGTAGTTACTTATAGAATGCTTTGGGTTACTGAAAGTGATGTTCAATTTATCATAATAAAGCGAAAGAGATCGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04392 map04011 map04392
Pfam Domains
Protein Families
Pkinase

Protein Analysis

120

Amino Acids

13.45

Weight (kDa)

5.1

Isoelectric Point (pI)

63.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 111
AciI CCGC 1 cut(s) 109
AcuI CTGAAG 1 cut(s) 80
AcyI GRCGYC 1 cut(s) 254
AfaI GTAC 1 cut(s) 250
AgsI TTSAA 1 cut(s) 326
AluBI AGCT 4 cut(s) 20, 28, 58, 182
AluI AGCT 4 cut(s) 20, 28, 58, 182
ApeKI GCWGC 3 cut(s) 25, 28, 76
AspS9I GGNCC 1 cut(s) 106
AsuHPI GGTGA 1 cut(s) 164
AvaII GGWCC 1 cut(s) 106
BbsI GAAGAC 1 cut(s) 141
BbvI GCAGC 3 cut(s) 15, 37, 63
BccI CCATC 1 cut(s) 181
BisI GCNGC 3 cut(s) 26, 29, 77
BlsI GCNGC 3 cut(s) 27, 30, 78
Bme18I GGWCC 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 84
BpiI GAAGAC 1 cut(s) 141
BpuEI CTTGAG 1 cut(s) 229
BsaHI GRCGYC 1 cut(s) 254
BsaJI CCNNGG 1 cut(s) 32
BseDI CCNNGG 1 cut(s) 32
BseRI GAGGAG 2 cut(s) 80, 83
BseXI GCAGC 3 cut(s) 15, 37, 63
BseYI CCCAGC 1 cut(s) 227
Bsh1236I CGCG 1 cut(s) 111
BsiSI CCGG 1 cut(s) 80
BsmI GAATGC 1 cut(s) 303
Bsp143I GATC 1 cut(s) 350
BspACI CCGC 1 cut(s) 109
BspFNI CGCG 1 cut(s) 111
BspLI GGNNCC 1 cut(s) 84
BssECI CCNNGG 1 cut(s) 32
BssMI GATC 1 cut(s) 350
BssNI GRCGYC 1 cut(s) 254
Bst4CI ACNGT 1 cut(s) 248
Bst6I CTCTTC 1 cut(s) 234
BstACI GRCGYC 1 cut(s) 254
BstFNI CGCG 1 cut(s) 111
BstKTI GATC 1 cut(s) 353
BstMBI GATC 1 cut(s) 350
BstMWI GCNNNNNNNGC 2 cut(s) 82, 188
BstUI CGCG 1 cut(s) 111
BstV1I GCAGC 3 cut(s) 15, 37, 63
BstV2I GAAGAC 1 cut(s) 141
Cfr13I GGNCC 1 cut(s) 106
CseI GACGC 1 cut(s) 262
Csp6I GTAC 1 cut(s) 249
CviAII CATG 1 cut(s) 7
CviJI RGCY 8 cut(s) 20, 28, 47, 58, 85, 182, 191, 207
CviKI_1 RGCY 8 cut(s) 20, 28, 47, 58, 85, 182, 191, 207
CviQI GTAC 1 cut(s) 249
DpnI GATC 1 cut(s) 352
DpnII GATC 1 cut(s) 350
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Eco47I GGWCC 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 80
FaeI CATG 1 cut(s) 10
FaiI YATR 3 cut(s) 8, 294, 335
FatI CATG 1 cut(s) 6
Fnu4HI GCNGC 3 cut(s) 26, 29, 77
Fsp4HI GCNGC 3 cut(s) 26, 29, 77
GluI GCNGC 3 cut(s) 26, 29, 77
GsaI CCCAGC 1 cut(s) 231
HapII CCGG 1 cut(s) 80
HgaI GACGC 1 cut(s) 262
Hin1I GRCGYC 1 cut(s) 254
Hin1II CATG 1 cut(s) 10
HindIII AAGCTT 1 cut(s) 18
HinfI GANTC 3 cut(s) 10, 137, 143
HpaII CCGG 1 cut(s) 80
HphI GGTGA 1 cut(s) 164
Hpy188I TCNGA 3 cut(s) 127, 142, 148
Hpy188III TCNNGA 1 cut(s) 263
Hpy99I CGWCG 1 cut(s) 256
HpyAV CCTTC 6 cut(s) 55, 85, 91, 97, 124, 161
HpyCH4III ACNGT 1 cut(s) 248
HpyCH4V TGCA 1 cut(s) 281
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 188
Hsp92I GRCGYC 1 cut(s) 254
Hsp92II CATG 1 cut(s) 10
Kzo9I GATC 1 cut(s) 350
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 3 cut(s) 93, 213, 276
Lsp1109I GCAGC 3 cut(s) 15, 37, 63
MaeIII GTNAC 2 cut(s) 286, 307
MalI GATC 1 cut(s) 352
MboI GATC 1 cut(s) 350
MboII GAAGA 5 cut(s) 100, 146, 176, 248, 251
MluCI AATT 1 cut(s) 326
MlyI GAGTC 2 cut(s) 4, 131
MnlI CCTC 7 cut(s) 27, 33, 58, 61, 64, 142, 154
MseI TTAA 1 cut(s) 358
MspA1I CMGCKG 1 cut(s) 28
MspI CCGG 1 cut(s) 80
Mva1269I GAATGC 1 cut(s) 303
MvnI CGCG 1 cut(s) 111
MwoI GCNNNNNNNGC 2 cut(s) 82, 188
NdeII GATC 1 cut(s) 350
NlaIII CATG 1 cut(s) 10
NlaIV GGNNCC 1 cut(s) 84
NmeAIII GCCGAG 1 cut(s) 57
PcsI WCGNNNNNNNCGW 1 cut(s) 29
PctI GAATGC 1 cut(s) 303
PfeI GAWTC 1 cut(s) 143
PkrI GCNGC 3 cut(s) 27, 30, 78
PleI GAGTC 2 cut(s) 4, 131
PpsI GAGTC 2 cut(s) 4, 131
PspFI CCCAGC 1 cut(s) 227
PspN4I GGNNCC 1 cut(s) 84
PspPI GGNCC 1 cut(s) 106
PvuII CAGCTG 1 cut(s) 28
RsaI GTAC 1 cut(s) 250
RsaNI GTAC 1 cut(s) 249
SaqAI TTAA 1 cut(s) 358
SatI GCNGC 3 cut(s) 26, 29, 77
Sau3AI GATC 1 cut(s) 350
Sau96I GGNCC 1 cut(s) 106
SchI GAGTC 2 cut(s) 4, 131
SetI ASST 8 cut(s) 22, 30, 44, 60, 75, 184, 225, 273
SinI GGWCC 1 cut(s) 106
SmlI CTYRAG 1 cut(s) 208
SmoI CTYRAG 1 cut(s) 208
Sse9I AATT 1 cut(s) 326
SsiI CCGC 1 cut(s) 109
TaaI ACNGT 1 cut(s) 248
TasI AATT 1 cut(s) 326
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 1 cut(s) 358
Tru9I TTAA 1 cut(s) 358
TseI GCWGC 3 cut(s) 25, 28, 76
VpaK11BI GGWCC 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.