Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002667.1

Orthogroup ID

OG0002545

Physical Location & Seq

Genomic Coordinates Reverse (-)

6823 .. 8324

Gene Structure 1502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002667.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atggggatgatctcaaggcaagttttccctgtttgtgaaagcctctgcttcttttgtcctgcattgcgcgccagatcacgccattgccgagatttttcctcgctctccgtcgttgtggtgaggccgaggacaaggttggctgtgaaaaagctgaaggaggaggaggtgctgccggagccggaggagaaggagaaggaccacgtgattgtgatttcggagaaggaagactccgatttggagggtgaaagggaggaagaagaagaagaagagaacaaagttgtgatggctgacgatagtggtggcttgagtgctaacaaggttgctgggcaagaagaagagaacagtacgacgccgtttccagaaaaggtatccgaaaatttgcgcctttatttcagttgggtcgatgctggttctgatgaattgtgttccttatttgtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 ko04392 map04011 map04392

Pfam Domains

Protein Families

Pkinase

Protein Analysis

146

Amino Acids

16.57

Weight (kDa)

4.61

Isoelectric Point (pI)

68.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002545)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02130 FvH4_4g19090 FvH4_4g19090 FvH4_4g19090 FvH4_4g19090
malus_domestica	MD02G1308900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0316701 RchiOBHm_Chr1g0322201 RchiOBHm_Chr1g0331421
rosa_laevigata	RLG00000001007 RLG00000015282 RLG00000018939 RLG00000021189 RLG00000022243 RLG00000026167 RLG00000032388
rosa_multiflora	Rmu_sc0002667.1_g000001 Rmu_sc0005467.1_g000011 Rmu_sc0006942.1_g000001 Rmu_sc0007199.1_g000009 Rmu_sc0011314.1_g000010
rosa_roxburghii	Rroxscaffold_6G00406050 Rroxscaffold_7G00160900
rosa_samantha	Rh1AG023400 Rh1CG020200 Rh1CG022200 Rh1DG017900 Rh1DG020300 Rh1DG020900 Rh2AG275200 Rh2BG437500 Rh3DG271900 Rh4BG003200 Rh4BG137900 Rh4CG142900 Rh4DG257100 Rh5AG116000 Rh6CG275000 Rh7DG386000
rosa_wichuraiana	Rw1G001510 Rw1G001710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	69
AcsI	RAATTY	1 cut(s)	376
AcuI	CTGAAG	1 cut(s)	173
AcvI	CACGTG	1 cut(s)	202
AcyI	GRCGYC	1 cut(s)	350
AfaI	GTAC	1 cut(s)	346
AluBI	AGCT	1 cut(s)	151
AluI	AGCT	1 cut(s)	151
AoxI	GGCC	1 cut(s)	122
ApeKI	GCWGC	1 cut(s)	169
ApoI	RAATTY	1 cut(s)	376
AspLEI	GCGC	3 cut(s)	69, 71, 384
AspS9I	GGNCC	1 cut(s)	196
AsuHPI	GGTGA	2 cut(s)	130, 254
AvaII	GGWCC	1 cut(s)	196
BbrPI	CACGTG	1 cut(s)	202
BbsI	GAAGAC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	156
BccI	CCATC	1 cut(s)	277
BceAI	ACGGC	1 cut(s)	337
BciVI	GTATCC	1 cut(s)	379
BfuI	GTATCC	1 cut(s)	379
BisI	GCNGC	1 cut(s)	170
BlsI	GCNGC	1 cut(s)	171
Bme18I	GGWCC	1 cut(s)	196
BmgT120I	GGNCC	1 cut(s)	196
BmiI	GGNNCC	1 cut(s)	177
BmsI	GCATC	1 cut(s)	394
BpiI	GAAGAC	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	325
BsaAI	YACGTR	1 cut(s)	202
BsaHI	GRCGYC	1 cut(s)	350
BsaJI	CCNNGG	1 cut(s)	125
Bse3DI	GCAATG	2 cut(s)	62, 82
BseDI	CCNNGG	1 cut(s)	125
BseGI	GGATG	1 cut(s)	12
BseMI	GCAATG	2 cut(s)	62, 82
BsePI	GCGCGC	1 cut(s)	67
BseRI	GAGGAG	3 cut(s)	173, 176, 197
BseXI	GCAGC	1 cut(s)	156
BseYI	CCCAGC	1 cut(s)	323
Bsh1236I	CGCG	1 cut(s)	69
BshFI	GGCC	1 cut(s)	124
BsiSI	CCGG	2 cut(s)	173, 179
BsnI	GGCC	1 cut(s)	124
Bsp143I	GATC	2 cut(s)	9, 74
BspANI	GGCC	1 cut(s)	124
BspFNI	CGCG	1 cut(s)	69
BspLI	GGNNCC	1 cut(s)	177
BsrDI	GCAATG	2 cut(s)	62, 82
BssECI	CCNNGG	1 cut(s)	125
BssHII	GCGCGC	1 cut(s)	67
BssMI	GATC	2 cut(s)	9, 74
BssNI	GRCGYC	1 cut(s)	350
Bst4CI	ACNGT	1 cut(s)	344
Bst6I	CTCTTC	2 cut(s)	261, 330
BstACI	GRCGYC	1 cut(s)	350
BstBAI	YACGTR	1 cut(s)	202
BstC8I	GCNNGC	1 cut(s)	69
BstF5I	GGATG	1 cut(s)	12
BstFNI	CGCG	1 cut(s)	69
BstHHI	GCGC	3 cut(s)	69, 71, 384
BstKTI	GATC	2 cut(s)	12, 77
BstMBI	GATC	2 cut(s)	9, 74
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 175
BstUI	CGCG	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	156
BstV2I	GAAGAC	1 cut(s)	231
BsuI	GTATCC	1 cut(s)	379
BsuRI	GGCC	1 cut(s)	124
BtsCI	GGATG	1 cut(s)	12
Cac8I	GCNNGC	1 cut(s)	69
CfoI	GCGC	3 cut(s)	69, 71, 384
Cfr13I	GGNCC	1 cut(s)	196
CseI	GACGC	1 cut(s)	358
Csp6I	GTAC	1 cut(s)	345
CviJI	RGCY	7 cut(s)	42, 124, 140, 151, 178, 287, 303
CviKI_1	RGCY	7 cut(s)	42, 124, 140, 151, 178, 287, 303
CviQI	GTAC	1 cut(s)	345
DpnI	GATC	2 cut(s)	11, 76
DpnII	GATC	2 cut(s)	9, 74
Eam1104I	CTCTTC	2 cut(s)	261, 330
EarI	CTCTTC	2 cut(s)	261, 330
Eco47I	GGWCC	1 cut(s)	196
Eco57I	CTGAAG	1 cut(s)	173
Eco72I	CACGTG	1 cut(s)	202
Fnu4HI	GCNGC	1 cut(s)	170
FokI	GGATG	1 cut(s)	19
Fsp4HI	GCNGC	1 cut(s)	170
GlaI	GCGC	3 cut(s)	68, 70, 383
GluI	GCNGC	1 cut(s)	170
GsaI	CCCAGC	1 cut(s)	327
HaeIII	GGCC	1 cut(s)	124
HapII	CCGG	2 cut(s)	173, 179
HgaI	GACGC	1 cut(s)	358
HhaI	GCGC	3 cut(s)	69, 71, 384
Hin1I	GRCGYC	1 cut(s)	350
Hin6I	GCGC	3 cut(s)	67, 69, 382
HinP1I	GCGC	3 cut(s)	67, 69, 382
HinfI	GANTC	1 cut(s)	227
HpaII	CCGG	2 cut(s)	173, 179
HphI	GGTGA	2 cut(s)	130, 254
Hpy188I	TCNGA	4 cut(s)	217, 232, 373, 415
Hpy188III	TCNNGA	1 cut(s)	359
Hpy99I	CGWCG	2 cut(s)	113, 352
HpyAV	CCTTC	4 cut(s)	148, 181, 187, 214
HpyCH4III	ACNGT	1 cut(s)	344
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	1 cut(s)	62
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 175
HpySE526I	ACGT	1 cut(s)	201
Hsp92I	GRCGYC	1 cut(s)	350
HspAI	GCGC	3 cut(s)	67, 69, 382
Kzo9I	GATC	2 cut(s)	9, 74
LmnI	GCTCC	1 cut(s)	175
LpnPI	CCDG	8 cut(s)	42, 72, 85, 186, 192, 309, 372, 393
Lsp1109I	GCAGC	1 cut(s)	156
LweI	GCATC	1 cut(s)	394
MaeII	ACGT	1 cut(s)	201
MalI	GATC	2 cut(s)	11, 76
MboI	GATC	2 cut(s)	9, 74
MboII	GAAGA	8 cut(s)	236, 266, 269, 272, 275, 278, 344, 347
MluCI	AATT	2 cut(s)	376, 419
MlyI	GAGTC	1 cut(s)	221
MseI	TTAA	1 cut(s)	439
MspI	CCGG	2 cut(s)	173, 179
MvnI	CGCG	1 cut(s)	69
MwoI	GCNNNNNNNGC	2 cut(s)	68, 175
NdeII	GATC	2 cut(s)	9, 74
NlaIV	GGNNCC	1 cut(s)	177
NmeAIII	GCCGAG	2 cut(s)	113, 150
PauI	GCGCGC	1 cut(s)	67
PcsI	WCGNNNNNNNCGW	1 cut(s)	85
PkrI	GCNGC	1 cut(s)	171
PleI	GAGTC	1 cut(s)	221
PmaCI	CACGTG	1 cut(s)	202
PmlI	CACGTG	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	221
Ppu21I	YACGTR	1 cut(s)	202
PspCI	CACGTG	1 cut(s)	202
PspFI	CCCAGC	1 cut(s)	323
PspN4I	GGNNCC	1 cut(s)	177
PspPI	GGNCC	1 cut(s)	196
PteI	GCGCGC	1 cut(s)	67
RsaI	GTAC	1 cut(s)	346
RsaNI	GTAC	1 cut(s)	345
SaqAI	TTAA	1 cut(s)	439
SatI	GCNGC	1 cut(s)	170
Sau3AI	GATC	2 cut(s)	9, 74
Sau96I	GGNCC	1 cut(s)	196
SchI	GAGTC	1 cut(s)	221
SetI	ASST	6 cut(s)	137, 153, 168, 204, 321, 369
SfaNI	GCATC	1 cut(s)	394
SinI	GGWCC	1 cut(s)	196
SmlI	CTYRAG	2 cut(s)	13, 304
SmoI	CTYRAG	2 cut(s)	13, 304
Sse9I	AATT	2 cut(s)	376, 419
TaaI	ACNGT	1 cut(s)	344
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	1 cut(s)	402
TasI	AATT	2 cut(s)	376, 419
Tru1I	TTAA	1 cut(s)	439
Tru9I	TTAA	1 cut(s)	439
TseI	GCWGC	1 cut(s)	169
TspDTI	ATGAA	1 cut(s)	432
TspGWI	ACGGA	1 cut(s)	97
VpaK11BI	GGWCC	1 cut(s)	196
XapI	RAATTY	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.