Rmu_sc0007199.1_g000009

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007199.1
OG0002545
Physical Location & Seq
Forward (+)
46521 .. 46952
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007199.1_g000009.1.cds

Sequence Viewer

Length: 378 bp
atgtccatgactctcaaagcttcgcggctgcaggtagctgaggctgtggtgaggccgaggacgaggttggctgctaaaaagctaaaggaagaggaggtgttgtcgaagctggagaaggagaaggagaaggagaaggactgcgtgattgtgatttcggagaaggaagactccgattcggagggtgaaagggagcaagaagaagaagagaacaaagctatgatggctgacgatagtggtggcttgagcactaacaaggctgctgggcaagaagaagagggcattacagtgtcgtttcctgaaaaggtatccgaaaatttgcgcctttatttcagttgggtcgatgttggttctgatgaattgtgttccttatttgtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04392 map04011 map04392
Pfam Domains
Protein Families
Pkinase

Protein Analysis

125

Amino Acids

14.03

Weight (kDa)

4.61

Isoelectric Point (pI)

50.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 22
AccII CGCG 1 cut(s) 25
AciI CCGC 1 cut(s) 25
AcsI RAATTY 1 cut(s) 313
AluBI AGCT 5 cut(s) 20, 38, 82, 109, 215
AluI AGCT 5 cut(s) 20, 38, 82, 109, 215
Alw21I GWGCWC 1 cut(s) 248
AoxI GGCC 1 cut(s) 53
ApeKI GCWGC 3 cut(s) 28, 71, 257
ApoI RAATTY 1 cut(s) 313
AspLEI GCGC 1 cut(s) 321
AsuHPI GGTGA 2 cut(s) 61, 194
BbsI GAAGAC 1 cut(s) 171
Bbv12I GWGCWC 1 cut(s) 248
BbvCI CCTCAGC 1 cut(s) 39
BbvI GCAGC 3 cut(s) 15, 58, 244
BccI CCATC 1 cut(s) 214
BciVI GTATCC 1 cut(s) 316
BfmI CTRYAG 1 cut(s) 29
BfuAI ACCTGC 1 cut(s) 22
BfuI GTATCC 1 cut(s) 316
BisI GCNGC 4 cut(s) 26, 29, 72, 258
BlsI GCNGC 4 cut(s) 27, 30, 73, 259
BpiI GAAGAC 1 cut(s) 171
BpmI CTGGAG 1 cut(s) 131
Bpu10I CCTNAGC 1 cut(s) 39
BpuEI CTTGAG 1 cut(s) 262
BsaJI CCNNGG 1 cut(s) 56
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
BseDI CCNNGG 1 cut(s) 56
BseMII CTCAG 1 cut(s) 30
BseRI GAGGAG 1 cut(s) 107
BseXI GCAGC 3 cut(s) 15, 58, 244
BseYI CCCAGC 1 cut(s) 260
Bsh1236I CGCG 1 cut(s) 25
BshFI GGCC 1 cut(s) 55
BsiHKAI GWGCWC 1 cut(s) 248
BsnI GGCC 1 cut(s) 55
Bsp1286I GDGCHC 1 cut(s) 248
BspACI CCGC 1 cut(s) 25
BspANI GGCC 1 cut(s) 55
BspCNI CTCAG 1 cut(s) 31
BspFNI CGCG 1 cut(s) 25
BspMAI CTGCAG 1 cut(s) 33
BspMI ACCTGC 1 cut(s) 22
BssECI CCNNGG 1 cut(s) 56
Bst4CI ACNGT 1 cut(s) 286
Bst6I CTCTTC 3 cut(s) 84, 198, 267
BstDEI CTNAG 1 cut(s) 39
BstFNI CGCG 1 cut(s) 25
BstHHI GCGC 1 cut(s) 321
BstMWI GCNNNNNNNGC 1 cut(s) 221
BstSFI CTRYAG 1 cut(s) 29
BstUI CGCG 1 cut(s) 25
BstV1I GCAGC 3 cut(s) 15, 58, 244
BstV2I GAAGAC 1 cut(s) 171
BsuI GTATCC 1 cut(s) 316
BsuRI GGCC 1 cut(s) 55
BtsIMutI CAGTG 1 cut(s) 291
BveI ACCTGC 1 cut(s) 22
CfoI GCGC 1 cut(s) 321
CviAII CATG 1 cut(s) 7
DdeI CTNAG 1 cut(s) 39
Eam1104I CTCTTC 3 cut(s) 84, 198, 267
EarI CTCTTC 3 cut(s) 84, 198, 267
FaeI CATG 1 cut(s) 10
FaiI YATR 2 cut(s) 8, 218
FatI CATG 1 cut(s) 6
Fnu4HI GCNGC 4 cut(s) 26, 29, 72, 258
Fsp4HI GCNGC 4 cut(s) 26, 29, 72, 258
GlaI GCGC 1 cut(s) 320
GluI GCNGC 4 cut(s) 26, 29, 72, 258
GsaI CCCAGC 1 cut(s) 264
GsuI CTGGAG 1 cut(s) 131
HaeIII GGCC 1 cut(s) 55
HhaI GCGC 1 cut(s) 321
Hin1II CATG 1 cut(s) 10
Hin6I GCGC 1 cut(s) 319
HinP1I GCGC 1 cut(s) 319
HindIII AAGCTT 1 cut(s) 18
HinfI GANTC 3 cut(s) 10, 167, 173
HphI GGTGA 2 cut(s) 61, 194
Hpy188I TCNGA 5 cut(s) 157, 172, 178, 310, 352
Hpy188III TCNNGA 1 cut(s) 296
HpyAV CCTTC 5 cut(s) 109, 115, 121, 127, 154
HpyCH4III ACNGT 1 cut(s) 286
HpyCH4V TGCA 1 cut(s) 31
HpyF10VI GCNNNNNNNGC 1 cut(s) 221
HpyF3I CTNAG 1 cut(s) 39
Hsp92II CATG 1 cut(s) 10
HspAI GCGC 1 cut(s) 319
LmnI GCTCC 1 cut(s) 190
LpnPI CCDG 4 cut(s) 17, 95, 246, 309
Lsp1109I GCAGC 3 cut(s) 15, 58, 244
MboII GAAGA 7 cut(s) 101, 176, 209, 212, 215, 281, 284
MhlI GDGCHC 1 cut(s) 248
MluCI AATT 2 cut(s) 313, 356
MlyI GAGTC 2 cut(s) 4, 161
MnlI CCTC 8 cut(s) 34, 45, 51, 57, 85, 88, 172, 268
MseI TTAA 1 cut(s) 376
MslI CAYNNNNRTG 1 cut(s) 284
MvnI CGCG 1 cut(s) 25
MwoI GCNNNNNNNGC 1 cut(s) 221
NlaIII CATG 1 cut(s) 10
NmeAIII GCCGAG 1 cut(s) 81
PfeI GAWTC 1 cut(s) 173
PkrI GCNGC 4 cut(s) 27, 30, 73, 259
PleI GAGTC 2 cut(s) 4, 161
PpsI GAGTC 2 cut(s) 4, 161
PspFI CCCAGC 1 cut(s) 260
PstI CTGCAG 1 cut(s) 33
RseI CAYNNNNRTG 1 cut(s) 284
SaqAI TTAA 1 cut(s) 376
SatI GCNGC 4 cut(s) 26, 29, 72, 258
SchI GAGTC 2 cut(s) 4, 161
SduI GDGCHC 1 cut(s) 248
SetI ASST 9 cut(s) 22, 36, 40, 68, 84, 99, 111, 217, 306
SfcI CTRYAG 1 cut(s) 29
SmiMI CAYNNNNRTG 1 cut(s) 284
SmlI CTYRAG 1 cut(s) 241
SmoI CTYRAG 1 cut(s) 241
Sse9I AATT 2 cut(s) 313, 356
SsiI CCGC 1 cut(s) 25
TaaI ACNGT 1 cut(s) 286
TaqI TCGA 2 cut(s) 104, 339
TasI AATT 2 cut(s) 313, 356
TauI GCSGC 1 cut(s) 28
TfiI GAWTC 1 cut(s) 173
Tru1I TTAA 1 cut(s) 376
Tru9I TTAA 1 cut(s) 376
TscAI CASTG 1 cut(s) 291
TseI GCWGC 3 cut(s) 28, 71, 257
TspDTI ATGAA 1 cut(s) 369
TspRI CASTG 1 cut(s) 291
XapI RAATTY 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.