FvH4_4g22510

Anaphase-promoting complex subunit 11 RING-H2 finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0002004
Physical Location & Seq
Forward (+)
25319130 .. 25321711
2582 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g22510.t2

Sequence Viewer

Length: 693 bp
ATGGGTTCTCTTTGCTGCTGTCCATGTGGTGATGAATTTGAAGAGTATTCTCTTCCAAGCAATCCAGTATACAGGCATTGCGCGTGCCTCAGATACTTCTTCCACCAGCTATTCAGCGGGTATAGTGCACCGTTTCAAAGGCTTGATGGGCGATCAGTTCCATCACCTAACCAAGCGGCTACTTCTTCTGTCCCATCTGGAACTGGCACAACAGTAGCAAATAACTCCTCAAATGATACTCCGTTTTCAGTGGCCAGACCATCACCCTTTGATACCGATCAAAGATACTCACGTTTGCAGCGTGACGGCTTAATCTCTAGGCGTGAGAAGTCCATGACACATTTGCAGGAAGATGCACAACAAGTGAGAAGAAGCAGTTCTGCGACAGAGTCCCTTAGTTCGGGGAAGAAACGGAATGGAGTTGAAGCTGAAGAAGATTGTAAGTCAGGGCAATCAGAGACCTCGGAAAAGGAACTAGCATCAAAAGTTGCATATGGACTAACTTATGTCCTGCCATCTTCAGAAGATGATGATGTCTGCCCTACATGTCTTGATGATTATACCACTGAAAATCCTAAAATCACAACAAAATGTTCTCACCATTTTCACCTTGGCTGTATTTATGAGTGGTTGGAAAGAAGTGAAAGTTGTCCAATTTGTGGGAAGGAGATGGAGTTCTGTGAAAGCCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2 zf-rbx1

Protein Analysis

231

Amino Acids

25.54

Weight (kDa)

5.1

Isoelectric Point (pI)

67.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 177 - 220 5.5e-11 RING-H2 zinc finger domain
zf-ANAPC11 PF12861 177 - 226 6.7e-07 Anaphase-promoting complex subunit 11 RING-H2 finger
zf-RING_2 PF13639 179 - 220 3.4e-12 Ring finger domain
zf-C3HC4_2 PF13923 180 - 220 2.1e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 180 - 218 1e-06 RING-type zinc-finger
zf-C3HC4 PF00097 180 - 220 1.4e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 659
AccI GTMKAC 1 cut(s) 69
AccII CGCG 1 cut(s) 83
AciI CCGC 2 cut(s) 117, 176
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 1 cut(s) 35
AcuI CTGAAG 2 cut(s) 450, 504
AfiI CCNNNNNNNGG 2 cut(s) 400, 659
AflIII ACRYGT 1 cut(s) 545
AgsI TTSAA 3 cut(s) 41, 137, 425
AloI GAACNNNNNNTCC 2 cut(s) 659, 691
AluBI AGCT 2 cut(s) 109, 428
AluI AGCT 2 cut(s) 109, 428
Alw21I GWGCWC 1 cut(s) 130
Alw26I GTCTC 1 cut(s) 452
Alw44I GTGCAC 1 cut(s) 126
AoxI GGCC 1 cut(s) 252
ApaLI GTGCAC 1 cut(s) 126
ApeKI GCWGC 2 cut(s) 15, 298
ApoI RAATTY 1 cut(s) 35
Asp700I GAANNNNTTC 1 cut(s) 376
AspLEI GCGC 1 cut(s) 83
AsuHPI GGTGA 5 cut(s) 41, 156, 255, 590, 599
BaeGI GKGCMC 1 cut(s) 130
BaeI ACNNNNGTAYC 2 cut(s) 277, 310
BalI TGGCCA 1 cut(s) 254
Bbv12I GWGCWC 1 cut(s) 130
BbvI GCAGC 2 cut(s) 2, 310
BccI CCATC 6 cut(s) 140, 169, 202, 268, 523, 664
BceAI ACGGC 1 cut(s) 322
BcoDI GTCTC 1 cut(s) 452
BfaI CTAG 2 cut(s) 318, 476
BisI GCNGC 3 cut(s) 16, 177, 299
BlsI GCNGC 3 cut(s) 17, 178, 300
BmsI GCATC 2 cut(s) 343, 488
BsaBI GATNNNNATC 1 cut(s) 276
BsaI GGTCTC 1 cut(s) 452
BsaJI CCNNGG 2 cut(s) 462, 610
BsaXI ACNNNNNCTCC 2 cut(s) 659, 689
Bsc4I CCNNNNNNNGG 2 cut(s) 400, 659
Bse1I ACTGG 2 cut(s) 65, 208
Bse3DI GCAATG 1 cut(s) 76
Bse8I GATNNNNATC 1 cut(s) 276
BseDI CCNNGG 2 cut(s) 462, 610
BseJI GATNNNNATC 1 cut(s) 276
BseLI CCNNNNNNNGG 2 cut(s) 400, 659
BseMI GCAATG 1 cut(s) 76
BseMII CTCAG 1 cut(s) 103
BseNI ACTGG 2 cut(s) 65, 208
BseRI GAGGAG 1 cut(s) 217
BseSI GKGCMC 1 cut(s) 130
BseXI GCAGC 2 cut(s) 2, 310
Bsh1236I CGCG 1 cut(s) 83
BshFI GGCC 1 cut(s) 254
BsiHKAI GWGCWC 1 cut(s) 130
BslFI GGGAC 2 cut(s) 176, 376
BslI CCNNNNNNNGG 2 cut(s) 400, 659
BsmAI GTCTC 1 cut(s) 452
BsmFI GGGAC 2 cut(s) 176, 376
BsnI GGCC 1 cut(s) 254
Bso31I GGTCTC 1 cut(s) 452
Bsp1286I GDGCHC 1 cut(s) 130
Bsp143I GATC 2 cut(s) 152, 277
BspACI CCGC 2 cut(s) 117, 176
BspANI GGCC 1 cut(s) 254
BspCNI CTCAG 1 cut(s) 102
BspFNI CGCG 1 cut(s) 83
BspTNI GGTCTC 1 cut(s) 452
BsrDI GCAATG 1 cut(s) 76
BsrI ACTGG 2 cut(s) 65, 208
BssECI CCNNGG 2 cut(s) 462, 610
BssMI GATC 2 cut(s) 152, 277
BssNAI GTATAC 1 cut(s) 70
BssT1I CCWWGG 1 cut(s) 610
Bst1107I GTATAC 1 cut(s) 70
Bst4CI ACNGT 2 cut(s) 132, 214
Bst6I CTCTTC 2 cut(s) 36, 57
BstC8I GCNNGC 1 cut(s) 85
BstDEI CTNAG 2 cut(s) 89, 395
BstFNI CGCG 1 cut(s) 83
BstHHI GCGC 1 cut(s) 83
BstKTI GATC 2 cut(s) 155, 280
BstMAI GTCTC 1 cut(s) 452
BstMBI GATC 2 cut(s) 152, 277
BstMWI GCNNNNNNNGC 1 cut(s) 148
BstNSI RCATGY 1 cut(s) 549
BstSLI GKGCMC 1 cut(s) 130
BstUI CGCG 1 cut(s) 83
BstV1I GCAGC 2 cut(s) 2, 310
BstZ17I GTATAC 1 cut(s) 70
BsuRI GGCC 1 cut(s) 254
BtsIMutI CAGTG 2 cut(s) 255, 564
Cac8I GCNNGC 1 cut(s) 85
CfoI GCGC 1 cut(s) 83
CviAII CATG 3 cut(s) 24, 334, 546
CviJI RGCY 8 cut(s) 109, 142, 179, 254, 309, 428, 615, 687
CviKI_1 RGCY 8 cut(s) 109, 142, 179, 254, 309, 428, 615, 687
DdeI CTNAG 2 cut(s) 89, 395
DpnI GATC 2 cut(s) 154, 279
DpnII GATC 2 cut(s) 152, 277
EaeI YGGCCR 1 cut(s) 252
Eam1104I CTCTTC 2 cut(s) 36, 57
EarI CTCTTC 2 cut(s) 36, 57
Eco130I CCWWGG 1 cut(s) 610
Eco31I GGTCTC 1 cut(s) 452
Eco57I CTGAAG 2 cut(s) 450, 504
EcoT14I CCWWGG 1 cut(s) 610
ErhI CCWWGG 1 cut(s) 610
FaeI CATG 3 cut(s) 27, 337, 549
FaqI GGGAC 2 cut(s) 176, 376
FatI CATG 3 cut(s) 23, 333, 545
FauI CCCGC 1 cut(s) 110
FauNDI CATATG 1 cut(s) 493
FblI GTMKAC 1 cut(s) 69
Fnu4HI GCNGC 3 cut(s) 16, 177, 299
Fsp4HI GCNGC 3 cut(s) 16, 177, 299
FspBI CTAG 2 cut(s) 318, 476
GlaI GCGC 1 cut(s) 82
GluI GCNGC 3 cut(s) 16, 177, 299
HaeIII GGCC 1 cut(s) 254
HhaI GCGC 1 cut(s) 83
Hin1II CATG 3 cut(s) 27, 337, 549
Hin6I GCGC 1 cut(s) 81
HinP1I GCGC 1 cut(s) 81
HinfI GANTC 1 cut(s) 389
HphI GGTGA 5 cut(s) 41, 156, 255, 590, 599
Hpy166II GTNNAC 2 cut(s) 70, 128
Hpy188I TCNGA 4 cut(s) 92, 457, 466, 523
Hpy188III TCNNGA 2 cut(s) 198, 551
Hpy8I GTNNAC 2 cut(s) 70, 128
HpyAV CCTTC 1 cut(s) 658
HpyCH4III ACNGT 2 cut(s) 132, 214
HpyCH4IV ACGT 1 cut(s) 292
HpyCH4V TGCA 5 cut(s) 128, 298, 346, 356, 491
HpyF10VI GCNNNNNNNGC 1 cut(s) 148
HpyF3I CTNAG 2 cut(s) 89, 395
HpySE526I ACGT 1 cut(s) 292
Hsp92II CATG 3 cut(s) 27, 337, 549
HspAI GCGC 1 cut(s) 81
Kzo9I GATC 2 cut(s) 152, 277
LpnPI CCDG 9 cut(s) 58, 78, 119, 183, 189, 268, 332, 432, 524
Lsp1109I GCAGC 2 cut(s) 2, 310
LweI GCATC 2 cut(s) 343, 488
MaeI CTAG 2 cut(s) 318, 476
MaeII ACGT 1 cut(s) 292
MaeIII GTNAC 1 cut(s) 302
MalI GATC 2 cut(s) 154, 279
MboI GATC 2 cut(s) 152, 277
MhlI GDGCHC 1 cut(s) 130
MlsI TGGCCA 1 cut(s) 254
MluCI AATT 2 cut(s) 35, 654
MluNI TGGCCA 1 cut(s) 254
MlyI GAGTC 1 cut(s) 398
MmeI TCCRAC 1 cut(s) 612
MnlI CCTC 3 cut(s) 98, 238, 472
Mox20I TGGCCA 1 cut(s) 254
MroXI GAANNNNTTC 1 cut(s) 376
MscI TGGCCA 1 cut(s) 254
MseI TTAA 1 cut(s) 311
Msp20I TGGCCA 1 cut(s) 254
MspA1I CMGCKG 1 cut(s) 117
MvnI CGCG 1 cut(s) 83
MwoI GCNNNNNNNGC 1 cut(s) 148
NdeI CATATG 1 cut(s) 493
NdeII GATC 2 cut(s) 152, 277
NlaIII CATG 3 cut(s) 27, 337, 549
NmuCI GTSAC 1 cut(s) 302
NspI RCATGY 1 cut(s) 549
PciI ACATGT 1 cut(s) 545
PcsI WCGNNNNNNNCGW 1 cut(s) 298
PdmI GAANNNNTTC 1 cut(s) 376
PflFI GACNNNGTC 1 cut(s) 388
PflMI CCANNNNNTGG 1 cut(s) 659
PkrI GCNGC 3 cut(s) 17, 178, 300
PleI GAGTC 1 cut(s) 397
PpsI GAGTC 1 cut(s) 397
PscI ACATGT 1 cut(s) 545
PsyI GACNNNGTC 1 cut(s) 388
SaqAI TTAA 1 cut(s) 311
SatI GCNGC 3 cut(s) 16, 177, 299
Sau3AI GATC 2 cut(s) 152, 277
SchI GAGTC 1 cut(s) 398
SduI GDGCHC 1 cut(s) 130
SetI ASST 6 cut(s) 111, 169, 295, 430, 464, 612
SfaNI GCATC 2 cut(s) 343, 488
Sse9I AATT 2 cut(s) 35, 654
SsiI CCGC 2 cut(s) 117, 176
SspMI CTAG 2 cut(s) 318, 476
StyI CCWWGG 1 cut(s) 610
TaaI ACNGT 2 cut(s) 132, 214
TaiI ACGT 1 cut(s) 295
TasI AATT 2 cut(s) 35, 654
TauI GCSGC 1 cut(s) 179
Tru1I TTAA 1 cut(s) 311
Tru9I TTAA 1 cut(s) 311
TscAI CASTG 2 cut(s) 255, 571
TseFI GTSAC 1 cut(s) 302
TseI GCWGC 2 cut(s) 15, 298
Tsp45I GTSAC 1 cut(s) 302
TspDTI ATGAA 1 cut(s) 48
TspGWI ACGGA 2 cut(s) 231, 427
TspRI CASTG 2 cut(s) 255, 571
Tth111I GACNNNGTC 1 cut(s) 388
Van91I CCANNNNNTGG 1 cut(s) 659
VneI GTGCAC 1 cut(s) 126
XapI RAATTY 1 cut(s) 35
XceI RCATGY 1 cut(s) 549
XcmI CCANNNNNNNNNTGG 1 cut(s) 608
XmiI GTMKAC 1 cut(s) 69
XmnI GAANNNNTTC 1 cut(s) 376
XspI CTAG 2 cut(s) 318, 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.