Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002004

Physical Location & Seq

Genomic Coordinates Forward (+)

31517428 .. 31518122

Gene Structure 695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00025140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGCGTTCGGCATCGGTGGGAGGAGCGTCGCTGTTGAGGAGTTCGATGTGTCGGCGTCGGTGGAGCTCTCCGGAAGACGGCTTTGCTTCCCCGGCTTGCTTCCACACCTCAAGGTTCTTGGACCGGAAAAGAACACCGTTGAGACCAGTTCCAAGTTCGGCCTCCAAATTTCAGGCTACATGTGGGAAATTGAATCTTCTAAACAAGAGGAATTTGTTGCTTTAGTCACCGAGGAGGAGGATGTTGGCCCTGCTCGCTTGGAAGAGTATGATGAAGAAAATCCAAGAAGTACCACTAAATGCAATCACCATTTTCACCTTGCTTGCATTCTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

112

Amino Acids

12.49

Weight (kDa)

4.79

Isoelectric Point (pI)

75.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69085
fragaria_vesca	FvH4_4g22510 FvH4_4g22510 FvH4_4g22510 FvH4_4g22510 FvH4_4g29590
malus_domestica	MD13G1059100.v1.1 MD13G1131900.v1.1 MD16G1142200.v1.1
prunus_persica	Prupe.1G213500_v2.0.a1 Prupe.1G213500_v2.0.a1 Prupe.1G290700_v2.0.a1
pyrus_communis	pycom13g05270 pycom13g11490 pycom16g11270
rosa_chinensis	RchiOBHm_Chr4g0428741 RchiOBHm_Chr4g0437831
rosa_laevigata	RLG00000006409 RLG00000007130
rosa_multiflora	Rmu_sc0004193.1_g000009 Rmu_sc0010032.1_g000003
rosa_roxburghii	Rroxscaffold_1G00025140 Rroxscaffold_2G00125470 Rroxscaffold_4G00303240 Rroxscaffold_4G00325060 Rroxscaffold_5G00370400 Rroxscaffold_5G00379000 Rroxscaffold_7G00190540
rosa_rugosa	Rorug04G0227900 Rorug04G0228000 Rorug04G0304000 Rorug04G0304100
rosa_samantha	Rh4AG285300 Rh4AG356400 Rh4BG291300 Rh4BG367300 Rh4CG307100 Rh4CG381300 Rh4DG288400 Rh4DG361600 Rh7AG038600 Rh7CG039800 Rh7DG038300
rosa_wichuraiana	Rw4G024740 Rw4G031430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	71
AcsI	RAATTY	2 cut(s)	168, 212
AcyI	GRCGYC	1 cut(s)	56
AfaI	GTAC	1 cut(s)	292
AfiI	CCNNNNNNNGG	1 cut(s)	78
AflIII	ACRYGT	1 cut(s)	180
AgsI	TTSAA	2 cut(s)	194, 335
AluBI	AGCT	1 cut(s)	67
AluI	AGCT	1 cut(s)	67
Alw21I	GWGCWC	1 cut(s)	69
Alw26I	GTCTC	1 cut(s)	137
Aor13HI	TCCGGA	1 cut(s)	71
AoxI	GGCC	2 cut(s)	160, 247
ApoI	RAATTY	2 cut(s)	168, 212
AspS9I	GGNCC	2 cut(s)	122, 248
AsuC2I	CCSGG	1 cut(s)	93
AsuHPI	GGTGA	3 cut(s)	220, 299, 308
AvaII	GGWCC	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	69
BbsI	GAAGAC	1 cut(s)	82
Bbv12I	GWGCWC	1 cut(s)	69
BceAI	ACGGC	1 cut(s)	95
BcnI	CCSGG	1 cut(s)	93
BcoDI	GTCTC	1 cut(s)	137
Bme1390I	CCNGG	1 cut(s)	93
Bme18I	GGWCC	1 cut(s)	122
BmgT120I	GGNCC	2 cut(s)	122, 248
BmrFI	CCNGG	1 cut(s)	93
BmsI	GCATC	1 cut(s)	21
BpiI	GAAGAC	1 cut(s)	82
BpuEI	CTTGAG	1 cut(s)	95
BpuMI	CCSGG	1 cut(s)	93
BsaHI	GRCGYC	1 cut(s)	56
BsaI	GGTCTC	1 cut(s)	137
BsaJI	CCNNGG	2 cut(s)	91, 231
BsaWI	WCCGGW	2 cut(s)	71, 124
Bsc4I	CCNNNNNNNGG	1 cut(s)	78
Bse1I	ACTGG	1 cut(s)	147
BseAI	TCCGGA	1 cut(s)	71
BseDI	CCNNGG	2 cut(s)	91, 231
BseGI	GGATG	1 cut(s)	247
BseLI	CCNNNNNNNGG	1 cut(s)	78
BseNI	ACTGG	1 cut(s)	147
BseRI	GAGGAG	4 cut(s)	37, 53, 248, 251
BshFI	GGCC	2 cut(s)	162, 249
BsiHKAI	GWGCWC	1 cut(s)	69
BsiSI	CCGG	3 cut(s)	72, 93, 125
BslI	CCNNNNNNNGG	1 cut(s)	78
BsmAI	GTCTC	1 cut(s)	137
BsmI	GAATGC	1 cut(s)	327
BsnI	GGCC	2 cut(s)	162, 249
Bso31I	GGTCTC	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp13I	TCCGGA	1 cut(s)	71
BspANI	GGCC	2 cut(s)	162, 249
BspEI	TCCGGA	1 cut(s)	71
BspTNI	GGTCTC	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	147
BssECI	CCNNGG	2 cut(s)	91, 231
BssNI	GRCGYC	1 cut(s)	56
Bst4CI	ACNGT	1 cut(s)	139
Bst6I	CTCTTC	1 cut(s)	258
BstACI	GRCGYC	1 cut(s)	56
BstC8I	GCNNGC	3 cut(s)	98, 256, 325
BstF5I	GGATG	1 cut(s)	247
BstMAI	GTCTC	1 cut(s)	137
BstMWI	GCNNNNNNNGC	2 cut(s)	93, 255
BstNSI	RCATGY	1 cut(s)	184
BstSCI	CCNGG	1 cut(s)	91
BstV2I	GAAGAC	1 cut(s)	82
BsuRI	GGCC	2 cut(s)	162, 249
BtsCI	GGATG	1 cut(s)	247
Cac8I	GCNNGC	3 cut(s)	98, 256, 325
Cfr13I	GGNCC	2 cut(s)	122, 248
CseI	GACGC	2 cut(s)	16, 45
Csp6I	GTAC	1 cut(s)	291
CviAII	CATG	1 cut(s)	181
CviJI	RGCY	6 cut(s)	67, 82, 96, 162, 177, 249
CviKI_1	RGCY	6 cut(s)	67, 82, 96, 162, 177, 249
CviQI	GTAC	1 cut(s)	291
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Ecl136II	GAGCTC	1 cut(s)	67
Eco24I	GRGCYC	1 cut(s)	69
Eco31I	GGTCTC	1 cut(s)	137
Eco47I	GGWCC	1 cut(s)	122
Eco53kI	GAGCTC	1 cut(s)	67
EcoICRI	GAGCTC	1 cut(s)	67
EcoT38I	GRGCYC	1 cut(s)	69
FaeI	CATG	1 cut(s)	184
FaiI	YATR	2 cut(s)	182, 270
FatI	CATG	1 cut(s)	180
FokI	GGATG	1 cut(s)	254
FriOI	GRGCYC	1 cut(s)	69
HaeIII	GGCC	2 cut(s)	162, 249
HapII	CCGG	3 cut(s)	72, 93, 125
HgaI	GACGC	2 cut(s)	16, 45
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	1 cut(s)	184
HinfI	GANTC	1 cut(s)	194
HpaII	CCGG	3 cut(s)	72, 93, 125
HphI	GGTGA	3 cut(s)	220, 299, 308
Hpy188III	TCNNGA	2 cut(s)	72, 332
Hpy99I	CGWCG	2 cut(s)	32, 61
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4V	TGCA	2 cut(s)	303, 327
HpyF10VI	GCNNNNNNNGC	2 cut(s)	93, 255
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	1 cut(s)	184
Kpn2I	TCCGGA	1 cut(s)	71
LmnI	GCTCC	2 cut(s)	24, 64
LpnPI	CCDG	6 cut(s)	85, 106, 138, 159, 160, 264
LweI	GCATC	1 cut(s)	21
MaeIII	GTNAC	1 cut(s)	226
MboII	GAAGA	4 cut(s)	87, 189, 275, 287
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	3 cut(s)	168, 189, 212
MnlI	CCTC	8 cut(s)	15, 31, 119, 173, 202, 226, 229, 232
MroI	TCCGGA	1 cut(s)	71
MspI	CCGG	3 cut(s)	72, 93, 125
MspR9I	CCNGG	1 cut(s)	93
Mva1269I	GAATGC	1 cut(s)	327
MwoI	GCNNNNNNNGC	2 cut(s)	93, 255
NciI	CCSGG	1 cut(s)	93
NlaIII	CATG	1 cut(s)	184
NmuCI	GTSAC	1 cut(s)	226
NspI	RCATGY	1 cut(s)	184
PciI	ACATGT	1 cut(s)	180
PctI	GAATGC	1 cut(s)	327
PfeI	GAWTC	1 cut(s)	194
PscI	ACATGT	1 cut(s)	180
Psp124BI	GAGCTC	1 cut(s)	69
PspPI	GGNCC	2 cut(s)	122, 248
RsaI	GTAC	1 cut(s)	292
RsaNI	GTAC	1 cut(s)	291
SacI	GAGCTC	1 cut(s)	69
Sau96I	GGNCC	2 cut(s)	122, 248
ScrFI	CCNGG	1 cut(s)	93
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	4 cut(s)	69, 111, 117, 321
SfaNI	GCATC	1 cut(s)	21
SinI	GGWCC	1 cut(s)	122
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	3 cut(s)	168, 189, 212
SstI	GAGCTC	1 cut(s)	69
StyD4I	CCNGG	1 cut(s)	91
TaaI	ACNGT	1 cut(s)	139
TaqI	TCGA	1 cut(s)	45
TasI	AATT	3 cut(s)	168, 189, 212
TfiI	GAWTC	1 cut(s)	194
TseFI	GTSAC	1 cut(s)	226
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	1 cut(s)	288
VpaK11BI	GGWCC	1 cut(s)	122
XapI	RAATTY	2 cut(s)	168, 212
XceI	RCATGY	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.