Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002004

Physical Location & Seq

Genomic Coordinates Forward (+)

52608383 .. 52609330

Gene Structure 948 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG367300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGGTTCTTTTTGTTCCTGCTTTAATGCGGACGATCCTTTGGATAACACGCACAATGCTAACAATGCCAACAATGATAACCGAATCATCCCTAACTTGTACAACAAGGTTGGGTTCGGCAATGAGGAAACACATTCATCTACTCAAGTAGCACCGAATGCTGTTATTATGGAACATGGAAATACACAATCTGGGACTGGCACGGATGCTGCTACTAATACTACTATTCAATCGCTTCCTGGTCCTTTGCTTATCGAAAAGAAGATTGGAGGACACCGGTTTCTCTATCCTTCCACCATGGAAGAGGAAGAATGCCCTACATGTCTTGAAGAATACACACCTGAAAATCCAAAGATAACAGCAAAGTGTTCTCACCATTTCCACCTTGCTTGTATATATGAATGGTTGGAGAGAAACCAAACATGTCCAGTTTGCAGCCAGGTGATGTCATTTAATGATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

154

Amino Acids

17.05

Weight (kDa)

4.86

Isoelectric Point (pI)

43.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	102 - 145	5.7e-12	RING-H2 zinc finger domain
zf-RING_2	PF13639	104 - 145	9.1e-13	Ring finger domain
zf-C3HC4_2	PF13923	104 - 145	8.6e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	104 - 132	1.7e-07	RING-like zinc finger
zf-ANAPC11	PF12861	105 - 152	2.4e-08	Anaphase-promoting complex subunit 11 RING-H2 finger
zf-C3HC4	PF00097	105 - 145	8.2e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	105 - 143	7.8e-08	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69085
fragaria_vesca	FvH4_4g22510 FvH4_4g22510 FvH4_4g22510 FvH4_4g22510 FvH4_4g29590
malus_domestica	MD13G1059100.v1.1 MD13G1131900.v1.1 MD16G1142200.v1.1
prunus_persica	Prupe.1G213500_v2.0.a1 Prupe.1G213500_v2.0.a1 Prupe.1G290700_v2.0.a1
pyrus_communis	pycom13g05270 pycom13g11490 pycom16g11270
rosa_chinensis	RchiOBHm_Chr4g0428741 RchiOBHm_Chr4g0437831
rosa_laevigata	RLG00000006409 RLG00000007130
rosa_multiflora	Rmu_sc0004193.1_g000009 Rmu_sc0010032.1_g000003
rosa_roxburghii	Rroxscaffold_1G00025140 Rroxscaffold_2G00125470 Rroxscaffold_4G00303240 Rroxscaffold_4G00325060 Rroxscaffold_5G00370400 Rroxscaffold_5G00379000 Rroxscaffold_7G00190540
rosa_rugosa	Rorug04G0227900 Rorug04G0228000 Rorug04G0304000 Rorug04G0304100
rosa_samantha	Rh4AG285300 Rh4AG356400 Rh4BG291300 Rh4BG367300 Rh4CG307100 Rh4CG381300 Rh4DG288400 Rh4DG361600 Rh7AG038600 Rh7CG039800 Rh7DG038300
rosa_wichuraiana	Rw4G024740 Rw4G031430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	29
AclWI	GGATC	1 cut(s)	29
AfaI	GTAC	1 cut(s)	101
AflIII	ACRYGT	2 cut(s)	320, 422
AgeI	ACCGGT	1 cut(s)	276
AgsI	TTSAA	2 cut(s)	230, 329
AjnI	CCWGG	2 cut(s)	238, 438
AjuI	GAANNNNNNNTTGG	2 cut(s)	249, 281
AlwI	GGATC	1 cut(s)	29
ApeKI	GCWGC	2 cut(s)	209, 435
AsiGI	ACCGGT	1 cut(s)	276
AspS9I	GGNCC	1 cut(s)	242
AsuHPI	GGTGA	2 cut(s)	365, 454
AvaII	GGWCC	1 cut(s)	242
BbvI	GCAGC	2 cut(s)	196, 447
BciT130I	CCWGG	2 cut(s)	240, 440
BisI	GCNGC	2 cut(s)	210, 436
BlsI	GCNGC	2 cut(s)	211, 437
Bme1390I	CCNGG	2 cut(s)	240, 440
Bme18I	GGWCC	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	242
BmrFI	CCNGG	2 cut(s)	240, 440
BmsI	GCATC	1 cut(s)	196
BpuEI	CTTGAG	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	297
BsaWI	WCCGGW	1 cut(s)	276
Bse118I	RCCGGY	1 cut(s)	276
Bse1I	ACTGG	2 cut(s)	202, 428
Bse3DI	GCAATG	1 cut(s)	127
BseBI	CCWGG	2 cut(s)	240, 440
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	2 cut(s)	87, 211
BseMI	GCAATG	1 cut(s)	127
BseNI	ACTGG	2 cut(s)	202, 428
BseXI	GCAGC	2 cut(s)	196, 447
BshTI	ACCGGT	1 cut(s)	276
BsiSI	CCGG	1 cut(s)	277
BslFI	GGGAC	1 cut(s)	208
BsmFI	GGGAC	1 cut(s)	208
BsmI	GAATGC	2 cut(s)	163, 317
Bsp1407I	TGTACA	1 cut(s)	99
Bsp143I	GATC	2 cut(s)	34, 457
Bsp19I	CCATGG	1 cut(s)	297
BspACI	CCGC	1 cut(s)	29
BspPI	GGATC	1 cut(s)	29
BsrDI	GCAATG	1 cut(s)	127
BsrFI	RCCGGY	1 cut(s)	276
BsrGI	TGTACA	1 cut(s)	99
BsrI	ACTGG	2 cut(s)	202, 428
BssAI	RCCGGY	1 cut(s)	276
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	2 cut(s)	34, 457
BssT1I	CCWWGG	1 cut(s)	297
Bst2UI	CCWGG	2 cut(s)	240, 440
Bst6I	CTCTTC	1 cut(s)	297
BstAPI	GCANNNNNTGC	1 cut(s)	158
BstAUI	TGTACA	1 cut(s)	99
BstDSI	CCRYGG	1 cut(s)	297
BstF5I	GGATG	2 cut(s)	87, 211
BstKTI	GATC	2 cut(s)	37, 460
BstMBI	GATC	2 cut(s)	34, 457
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 158
BstNI	CCWGG	2 cut(s)	240, 440
BstNSI	RCATGY	2 cut(s)	324, 426
BstSCI	CCNGG	2 cut(s)	238, 438
BstV1I	GCAGC	2 cut(s)	196, 447
BtgI	CCRYGG	1 cut(s)	297
BtsCI	GGATG	2 cut(s)	87, 211
Cfr10I	RCCGGY	1 cut(s)	276
Cfr13I	GGNCC	1 cut(s)	242
Csp6I	GTAC	1 cut(s)	100
CspAI	ACCGGT	1 cut(s)	276
CspCI	CAANNNNNGTGG	2 cut(s)	371, 406
CviAII	CATG	4 cut(s)	176, 298, 321, 423
CviJI	RGCY	1 cut(s)	438
CviKI_1	RGCY	1 cut(s)	438
CviQI	GTAC	1 cut(s)	100
DpnI	GATC	2 cut(s)	36, 459
DpnII	GATC	2 cut(s)	34, 457
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Eco130I	CCWWGG	1 cut(s)	297
Eco47I	GGWCC	1 cut(s)	242
EcoRII	CCWGG	2 cut(s)	238, 438
EcoT14I	CCWWGG	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	4 cut(s)	179, 301, 324, 426
FaiI	YATR	8 cut(s)	170, 177, 299, 322, 395, 397, 399, 424
FaqI	GGGAC	1 cut(s)	208
FatI	CATG	4 cut(s)	175, 297, 320, 422
Fnu4HI	GCNGC	2 cut(s)	210, 436
FokI	GGATG	2 cut(s)	74, 218
Fsp4HI	GCNGC	2 cut(s)	210, 436
GluI	GCNGC	2 cut(s)	210, 436
HapII	CCGG	1 cut(s)	277
Hin1II	CATG	4 cut(s)	179, 301, 324, 426
HinfI	GANTC	1 cut(s)	84
HpaII	CCGG	1 cut(s)	277
HphI	GGTGA	2 cut(s)	365, 454
Hpy188I	TCNGA	1 cut(s)	464
Hpy188III	TCNNGA	1 cut(s)	326
HpyAV	CCTTC	1 cut(s)	300
HpyCH4V	TGCA	1 cut(s)	435
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 158
Hsp92II	CATG	4 cut(s)	179, 301, 324, 426
Kzo9I	GATC	2 cut(s)	34, 457
Lsp1109I	GCAGC	2 cut(s)	196, 447
LweI	GCATC	1 cut(s)	196
MalI	GATC	2 cut(s)	36, 459
MboI	GATC	2 cut(s)	34, 457
MboII	GAAGA	4 cut(s)	274, 314, 320, 341
MmeI	TCCRAC	1 cut(s)	387
MnlI	CCTC	3 cut(s)	118, 263, 298
MseI	TTAA	2 cut(s)	24, 453
MspI	CCGG	1 cut(s)	277
MspR9I	CCNGG	2 cut(s)	240, 440
Mva1269I	GAATGC	2 cut(s)	163, 317
MvaI	CCWGG	2 cut(s)	240, 440
MwoI	GCNNNNNNNGC	2 cut(s)	65, 158
NcoI	CCATGG	1 cut(s)	297
NdeII	GATC	2 cut(s)	34, 457
NlaIII	CATG	4 cut(s)	179, 301, 324, 426
NspI	RCATGY	2 cut(s)	324, 426
PciI	ACATGT	2 cut(s)	320, 422
PctI	GAATGC	2 cut(s)	163, 317
PfeI	GAWTC	1 cut(s)	84
PinAI	ACCGGT	1 cut(s)	276
PkrI	GCNGC	2 cut(s)	211, 437
PscI	ACATGT	2 cut(s)	320, 422
Psp6I	CCWGG	2 cut(s)	238, 438
PspGI	CCWGG	2 cut(s)	238, 438
PspPI	GGNCC	1 cut(s)	242
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
SaqAI	TTAA	2 cut(s)	24, 453
SatI	GCNGC	2 cut(s)	210, 436
Sau3AI	GATC	2 cut(s)	34, 457
Sau96I	GGNCC	1 cut(s)	242
ScrFI	CCNGG	2 cut(s)	240, 440
SetI	ASST	4 cut(s)	111, 343, 387, 444
SfaNI	GCATC	1 cut(s)	196
SinI	GGWCC	1 cut(s)	242
SmlI	CTYRAG	1 cut(s)	144
SmoI	CTYRAG	1 cut(s)	144
SsiI	CCGC	1 cut(s)	29
StyD4I	CCNGG	2 cut(s)	238, 438
StyI	CCWWGG	1 cut(s)	297
TaqI	TCGA	1 cut(s)	255
TatI	WGTACW	1 cut(s)	99
TfiI	GAWTC	1 cut(s)	84
Tru1I	TTAA	2 cut(s)	24, 453
Tru9I	TTAA	2 cut(s)	24, 453
TseI	GCWGC	2 cut(s)	209, 435
TspDTI	ATGAA	2 cut(s)	126, 414
TspGWI	ACGGA	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	242
XceI	RCATGY	2 cut(s)	324, 426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.