Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002004

Physical Location & Seq

Genomic Coordinates Reverse (-)

23635708 .. 23645403

Gene Structure 9696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00303240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGTTGGCCCCGCCTCGCTTGGAAGAGTGTGATGAAGAAAATCCAAGAAGTACCACTAAATACGACCACCATTTTCACCTTGCTTGCATTCTTGAATGGATGGAAAGAAGTGACTCATGTCCGTGTGCGCTCAGGAACTCTAACCCCTTACAAACCCTAGCCGCCTTGGTTTGGAGATCTATCAATGGCGTCCGTGTCATCGCCAAGACCAAGCTCCACATCTTCTTCTCCGTCTCCGGCACCAAGGATCACCAGATTGTGAACCTCACTCTTAGGGTTCTCTATCACCACGAGGTGAACCTCACTTTTAACTGTCAACCGGGAGAACCAACATCAAAGAATCTCGCTTTTAGGAAAGGCTCTTCTTCGAGTTCGAGCGTTAATACCGGAAGACTCACGAGCAGCATTAATACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

138

Amino Acids

15.52

Weight (kDa)

8.69

Isoelectric Point (pI)

56.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69085
fragaria_vesca	FvH4_4g22510 FvH4_4g22510 FvH4_4g22510 FvH4_4g22510 FvH4_4g29590
malus_domestica	MD13G1059100.v1.1 MD13G1131900.v1.1 MD16G1142200.v1.1
prunus_persica	Prupe.1G213500_v2.0.a1 Prupe.1G213500_v2.0.a1 Prupe.1G290700_v2.0.a1
pyrus_communis	pycom13g05270 pycom13g11490 pycom16g11270
rosa_chinensis	RchiOBHm_Chr4g0428741 RchiOBHm_Chr4g0437831
rosa_laevigata	RLG00000006409 RLG00000007130
rosa_multiflora	Rmu_sc0004193.1_g000009 Rmu_sc0010032.1_g000003
rosa_roxburghii	Rroxscaffold_1G00025140 Rroxscaffold_2G00125470 Rroxscaffold_4G00303240 Rroxscaffold_4G00325060 Rroxscaffold_5G00370400 Rroxscaffold_5G00379000 Rroxscaffold_7G00190540
rosa_rugosa	Rorug04G0227900 Rorug04G0228000 Rorug04G0304000 Rorug04G0304100
rosa_samantha	Rh4AG285300 Rh4AG356400 Rh4BG291300 Rh4BG367300 Rh4CG307100 Rh4CG381300 Rh4DG288400 Rh4DG361600 Rh7AG038600 Rh7CG039800 Rh7DG038300
rosa_wichuraiana	Rw4G024740 Rw4G031430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	239
AciI	CCGC	2 cut(s)	11, 162
AclWI	GGATC	1 cut(s)	255
AcyI	GRCGYC	1 cut(s)	189
AdeI	CACNNNGTG	1 cut(s)	295
AfaI	GTAC	1 cut(s)	52
AfiI	CCNNNNNNNGG	1 cut(s)	171
AgsI	TTSAA	1 cut(s)	95
AluBI	AGCT	1 cut(s)	214
AluI	AGCT	1 cut(s)	214
Alw26I	GTCTC	1 cut(s)	238
AlwI	GGATC	1 cut(s)	255
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	1 cut(s)	402
AseI	ATTAAT	1 cut(s)	408
AspLEI	GCGC	1 cut(s)	130
AspS9I	GGNCC	1 cut(s)	7
AsuC2I	CCSGG	1 cut(s)	321
AsuHPI	GGTGA	4 cut(s)	68, 242, 278, 307
BanI	GGYRCC	1 cut(s)	239
BauI	CACGAG	2 cut(s)	290, 397
BbsI	GAAGAC	1 cut(s)	397
BccI	CCATC	1 cut(s)	94
BcnI	CCSGG	1 cut(s)	321
BcoDI	GTCTC	1 cut(s)	238
BfaI	CTAG	1 cut(s)	158
BglII	AGATCT	1 cut(s)	176
BisI	GCNGC	2 cut(s)	162, 403
BlsI	GCNGC	2 cut(s)	163, 404
Bme1390I	CCNGG	1 cut(s)	321
BmgT120I	GGNCC	1 cut(s)	7
BmiI	GGNNCC	2 cut(s)	9, 241
BmrFI	CCNGG	1 cut(s)	321
BoxI	GACNNNNGTC	1 cut(s)	117
BpiI	GAAGAC	1 cut(s)	397
Bpu10I	CCTNAGC	1 cut(s)	131
BpuMI	CCSGG	1 cut(s)	321
BsaHI	GRCGYC	1 cut(s)	189
BsaJI	CCNNGG	2 cut(s)	165, 243
BsaWI	WCCGGW	1 cut(s)	386
Bsc4I	CCNNNNNNNGG	1 cut(s)	171
BseDI	CCNNGG	2 cut(s)	165, 243
BseGI	GGATG	1 cut(s)	105
BseLI	CCNNNNNNNGG	1 cut(s)	171
BseMII	CTCAG	1 cut(s)	145
BshFI	GGCC	1 cut(s)	8
BshNI	GGYRCC	1 cut(s)	239
BsiSI	CCGG	3 cut(s)	237, 320, 387
BslI	CCNNNNNNNGG	1 cut(s)	171
BsmAI	GTCTC	1 cut(s)	238
BsmBI	CGTCTC	1 cut(s)	238
BsmI	GAATGC	1 cut(s)	87
BsnI	GGCC	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	176, 247
BspACI	CCGC	2 cut(s)	11, 162
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	1 cut(s)	144
BspLI	GGNNCC	2 cut(s)	9, 241
BspPI	GGATC	1 cut(s)	255
BspQI	GCTCTTC	1 cut(s)	367
BspT107I	GGYRCC	1 cut(s)	239
BssECI	CCNNGG	2 cut(s)	165, 243
BssMI	GATC	2 cut(s)	176, 247
BssNI	GRCGYC	1 cut(s)	189
BssSI	CACGAG	2 cut(s)	290, 397
BssT1I	CCWWGG	2 cut(s)	165, 243
Bst2BI	CACGAG	2 cut(s)	290, 397
Bst4CI	ACNGT	1 cut(s)	314
Bst6I	CTCTTC	2 cut(s)	18, 367
BstACI	GRCGYC	1 cut(s)	189
BstC8I	GCNNGC	1 cut(s)	85
BstDEI	CTNAG	2 cut(s)	131, 272
BstF5I	GGATG	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	2 cut(s)	179, 250
BstMAI	GTCTC	1 cut(s)	238
BstMBI	GATC	2 cut(s)	176, 247
BstPAI	GACNNNNGTC	1 cut(s)	117
BstSCI	CCNGG	1 cut(s)	319
BstV2I	GAAGAC	1 cut(s)	397
BstX2I	RGATCY	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	176
BsuRI	GGCC	1 cut(s)	8
BtgZI	GCGATG	1 cut(s)	184
BtsCI	GGATG	1 cut(s)	105
Cac8I	GCNNGC	1 cut(s)	85
CfoI	GCGC	1 cut(s)	130
Cfr13I	GGNCC	1 cut(s)	7
CseI	GACGC	1 cut(s)	178
Csp6I	GTAC	1 cut(s)	51
CviAII	CATG	1 cut(s)	117
CviJI	RGCY	4 cut(s)	8, 161, 214, 360
CviKI_1	RGCY	4 cut(s)	8, 161, 214, 360
CviQI	GTAC	1 cut(s)	51
DdeI	CTNAG	2 cut(s)	131, 272
DpnI	GATC	2 cut(s)	178, 249
DpnII	GATC	2 cut(s)	176, 247
DraIII	CACNNNGTG	1 cut(s)	295
Eam1104I	CTCTTC	2 cut(s)	18, 367
EarI	CTCTTC	2 cut(s)	18, 367
Eco130I	CCWWGG	2 cut(s)	165, 243
EcoT14I	CCWWGG	2 cut(s)	165, 243
ErhI	CCWWGG	2 cut(s)	165, 243
Esp3I	CGTCTC	1 cut(s)	238
FaeI	CATG	1 cut(s)	120
FaiI	YATR	1 cut(s)	118
FatI	CATG	1 cut(s)	116
FauI	CCCGC	1 cut(s)	18
Fnu4HI	GCNGC	2 cut(s)	162, 403
FokI	GGATG	1 cut(s)	112
Fsp4HI	GCNGC	2 cut(s)	162, 403
FspBI	CTAG	1 cut(s)	158
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	2 cut(s)	162, 403
HaeIII	GGCC	1 cut(s)	8
HapII	CCGG	3 cut(s)	237, 320, 387
HgaI	GACGC	1 cut(s)	178
HhaI	GCGC	1 cut(s)	130
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	1 cut(s)	120
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HincII	GTYRAC	1 cut(s)	317
HindII	GTYRAC	1 cut(s)	317
HinfI	GANTC	3 cut(s)	113, 340, 393
HpaII	CCGG	3 cut(s)	237, 320, 387
HphI	GGTGA	4 cut(s)	68, 242, 278, 307
Hpy166II	GTNNAC	3 cut(s)	262, 298, 317
Hpy188III	TCNNGA	3 cut(s)	92, 133, 397
Hpy8I	GTNNAC	3 cut(s)	262, 298, 317
HpyCH4III	ACNGT	1 cut(s)	314
HpyCH4V	TGCA	1 cut(s)	87
HpyF3I	CTNAG	2 cut(s)	131, 272
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	1 cut(s)	120
HspAI	GCGC	1 cut(s)	128
Kzo9I	GATC	2 cut(s)	176, 247
LguI	GCTCTTC	1 cut(s)	367
LmnI	GCTCC	1 cut(s)	219
LpnPI	CCDG	5 cut(s)	118, 250, 266, 333, 400
MaeI	CTAG	1 cut(s)	158
MaeIII	GTNAC	1 cut(s)	110
MalI	GATC	2 cut(s)	178, 249
MboI	GATC	2 cut(s)	176, 247
MboII	GAAGA	7 cut(s)	35, 47, 214, 217, 354, 357, 402
MflI	RGATCY	1 cut(s)	176
MlyI	GAGTC	2 cut(s)	107, 387
MnlI	CCTC	4 cut(s)	24, 275, 286, 311
MseI	TTAA	3 cut(s)	309, 381, 408
MslI	CAYNNNNRTG	1 cut(s)	121
MspI	CCGG	3 cut(s)	237, 320, 387
MspR9I	CCNGG	1 cut(s)	321
Mva1269I	GAATGC	1 cut(s)	87
NciI	CCSGG	1 cut(s)	321
NdeII	GATC	2 cut(s)	176, 247
NlaIII	CATG	1 cut(s)	120
NlaIV	GGNNCC	2 cut(s)	9, 241
NmuCI	GTSAC	1 cut(s)	110
PciSI	GCTCTTC	1 cut(s)	367
PctI	GAATGC	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	340
PkrI	GCNGC	2 cut(s)	163, 404
PleI	GAGTC	2 cut(s)	107, 387
PpsI	GAGTC	2 cut(s)	107, 387
PshAI	GACNNNNGTC	1 cut(s)	117
PshBI	ATTAAT	1 cut(s)	408
PspN4I	GGNNCC	2 cut(s)	9, 241
PspPI	GGNCC	1 cut(s)	7
PsuI	RGATCY	1 cut(s)	176
RsaI	GTAC	1 cut(s)	52
RsaNI	GTAC	1 cut(s)	51
RseI	CAYNNNNRTG	1 cut(s)	121
SapI	GCTCTTC	1 cut(s)	367
SaqAI	TTAA	3 cut(s)	309, 381, 408
SatI	GCNGC	2 cut(s)	162, 403
Sau3AI	GATC	2 cut(s)	176, 247
Sau96I	GGNCC	1 cut(s)	7
SchI	GAGTC	2 cut(s)	107, 387
ScrFI	CCNGG	1 cut(s)	321
SetI	ASST	6 cut(s)	81, 216, 267, 297, 303, 416
SmiMI	CAYNNNNRTG	1 cut(s)	121
SsiI	CCGC	2 cut(s)	11, 162
SspMI	CTAG	1 cut(s)	158
StyD4I	CCNGG	1 cut(s)	319
StyI	CCWWGG	2 cut(s)	165, 243
TaaI	ACNGT	1 cut(s)	314
TaqI	TCGA	2 cut(s)	368, 374
TauI	GCSGC	1 cut(s)	164
TfiI	GAWTC	1 cut(s)	340
Tru1I	TTAA	3 cut(s)	309, 381, 408
Tru9I	TTAA	3 cut(s)	309, 381, 408
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	1 cut(s)	402
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	1 cut(s)	48
TspGWI	ACGGA	3 cut(s)	111, 182, 220
VspI	ATTAAT	1 cut(s)	408
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.