Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002004

Physical Location & Seq

Genomic Coordinates Forward (+)

22681504 .. 22683596

Gene Structure 2093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G213500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGGTGCTCTTTGCTGCTGTCCTTGTAGTGAGGACTTTGAAGAATATGCTCTTCCAAGCAATTCAGTATATAGGCATTGCACATGCCTAAGATACTTCTTCCATCAGTTATTCAGTGGGTATAGTGCACCGTTTCAAAGGCTTGATGGACGGCCACCTTCATCACCTCTCCCAGGAGCTACTTTGGTATCATCCGGAGTAGGCACAACACTCCCGAATAATTCCTTGAACGATACTCAGCTCTCAGTGTCCAGGCCATCACCCTTTGATGCTGATCAAAGATACTCGCGTTTGCAGCGTGATGGATTGGTCTCTAGGCGCGATAAGTCAATGACTCATTTGCAAGAAGATGCGCAACAACTGAGAAGAGGCAGTTCTGGCACAGAGTCCCTGGGTTTTGGGAAGAAATGGAATGGAGATGATAATGAAGAAGATTGTAAGTTTGGCCAATCTGAGACCTCGGAAAAGGTTTTGGCAACAAAACTGGCATATGGACTAACTTTCGTGCAACCCTCATCTGAAGATGAAGATGTTTGCCCTACATGCCTGGATGAATACACTACAGAAAATCCTAAAATCACAACAAGATGTTCTCACCATTTTCACCTTGGCTGTATTTATGAATGGTTGGAAAGAAGCGAGAGCTGTCCAATTTGTGGCAAGGAAATGGAGTTCTGTGAAAGCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

230

Amino Acids

25.65

Weight (kDa)

5.0

Isoelectric Point (pI)

63.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69085
fragaria_vesca	FvH4_4g22510 FvH4_4g22510 FvH4_4g22510 FvH4_4g22510 FvH4_4g29590
malus_domestica	MD13G1059100.v1.1 MD13G1131900.v1.1 MD16G1142200.v1.1
prunus_persica	Prupe.1G213500_v2.0.a1 Prupe.1G213500_v2.0.a1 Prupe.1G290700_v2.0.a1
pyrus_communis	pycom13g05270 pycom13g11490 pycom16g11270
rosa_chinensis	RchiOBHm_Chr4g0428741 RchiOBHm_Chr4g0437831
rosa_laevigata	RLG00000006409 RLG00000007130
rosa_multiflora	Rmu_sc0004193.1_g000009 Rmu_sc0010032.1_g000003
rosa_roxburghii	Rroxscaffold_1G00025140 Rroxscaffold_2G00125470 Rroxscaffold_4G00303240 Rroxscaffold_4G00325060 Rroxscaffold_5G00370400 Rroxscaffold_5G00379000 Rroxscaffold_7G00190540
rosa_rugosa	Rorug04G0227900 Rorug04G0228000 Rorug04G0304000 Rorug04G0304100
rosa_samantha	Rh4AG285300 Rh4AG356400 Rh4BG291300 Rh4BG367300 Rh4CG307100 Rh4CG381300 Rh4DG288400 Rh4DG361600 Rh7AG038600 Rh7CG039800 Rh7DG038300
rosa_wichuraiana	Rw4G024740 Rw4G031430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	354
AccB7I	CCANNNNNTGG	1 cut(s)	656
AccII	CGCG	2 cut(s)	289, 321
AccIII	TCCGGA	1 cut(s)	194
AcoI	YGGCCR	2 cut(s)	152, 445
AcuI	CTGAAG	1 cut(s)	540
AfiI	CCNNNNNNNGG	2 cut(s)	173, 656
AgsI	TTSAA	3 cut(s)	41, 137, 229
AjnI	CCWGG	4 cut(s)	172, 251, 390, 546
AloI	GAACNNNNNNTCC	2 cut(s)	656, 688
AluBI	AGCT	3 cut(s)	179, 241, 645
AluI	AGCT	3 cut(s)	179, 241, 645
Alw21I	GWGCWC	2 cut(s)	10, 130
Alw26I	GTCTC	2 cut(s)	316, 449
Alw44I	GTGCAC	1 cut(s)	126
Aor13HI	TCCGGA	1 cut(s)	194
AoxI	GGCC	3 cut(s)	152, 254, 445
ApaLI	GTGCAC	1 cut(s)	126
ApeKI	GCWGC	2 cut(s)	15, 295
AspLEI	GCGC	2 cut(s)	321, 355
AsuHPI	GGTGA	4 cut(s)	156, 252, 587, 596
BaeGI	GKGCMC	1 cut(s)	130
BaeI	ACNNNNGTAYC	4 cut(s)	171, 204, 274, 307
BalI	TGGCCA	1 cut(s)	447
Bbv12I	GWGCWC	2 cut(s)	10, 130
BbvI	GCAGC	2 cut(s)	2, 307
BccI	CCATC	4 cut(s)	111, 140, 265, 296
BceAI	ACGGC	1 cut(s)	167
BciT130I	CCWGG	4 cut(s)	174, 253, 392, 548
BclI	TGATCA	1 cut(s)	274
BcoDI	GTCTC	2 cut(s)	316, 449
BfaI	CTAG	1 cut(s)	315
BfmI	CTRYAG	1 cut(s)	561
BisI	GCNGC	2 cut(s)	16, 296
BlsI	GCNGC	2 cut(s)	17, 297
Bme1390I	CCNGG	4 cut(s)	174, 253, 392, 548
BmrFI	CCNGG	4 cut(s)	174, 253, 392, 548
BmsI	GCATC	2 cut(s)	259, 340
BsaBI	GATNNNNATC	1 cut(s)	273
BsaI	GGTCTC	2 cut(s)	316, 449
BsaJI	CCNNGG	5 cut(s)	172, 390, 391, 459, 607
BsaWI	WCCGGW	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 656
Bse1I	ACTGG	1 cut(s)	489
Bse3DI	GCAATG	1 cut(s)	76
Bse8I	GATNNNNATC	1 cut(s)	273
BseAI	TCCGGA	1 cut(s)	194
BseBI	CCWGG	4 cut(s)	174, 253, 392, 548
BseDI	CCNNGG	5 cut(s)	172, 390, 391, 459, 607
BseGI	GGATG	2 cut(s)	191, 556
BseJI	GATNNNNATC	1 cut(s)	273
BseLI	CCNNNNNNNGG	2 cut(s)	173, 656
BseMI	GCAATG	1 cut(s)	76
BseMII	CTCAG	4 cut(s)	251, 258, 353, 444
BseNI	ACTGG	1 cut(s)	489
BseSI	GKGCMC	1 cut(s)	130
BseXI	GCAGC	2 cut(s)	2, 307
Bsh1236I	CGCG	2 cut(s)	289, 321
BshFI	GGCC	3 cut(s)	154, 256, 447
BsiHKAI	GWGCWC	2 cut(s)	10, 130
BsiSI	CCGG	1 cut(s)	195
BslFI	GGGAC	1 cut(s)	373
BslI	CCNNNNNNNGG	2 cut(s)	173, 656
BsmAI	GTCTC	2 cut(s)	316, 449
BsmFI	GGGAC	1 cut(s)	373
BsnI	GGCC	3 cut(s)	154, 256, 447
Bso31I	GGTCTC	2 cut(s)	316, 449
Bsp1286I	GDGCHC	2 cut(s)	10, 130
Bsp13I	TCCGGA	1 cut(s)	194
Bsp143I	GATC	1 cut(s)	274
BspANI	GGCC	3 cut(s)	154, 256, 447
BspCNI	CTCAG	4 cut(s)	250, 257, 354, 445
BspEI	TCCGGA	1 cut(s)	194
BspFNI	CGCG	2 cut(s)	289, 321
BspQI	GCTCTTC	1 cut(s)	57
BspTNI	GGTCTC	2 cut(s)	316, 449
BsrDI	GCAATG	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	489
BssECI	CCNNGG	5 cut(s)	172, 390, 391, 459, 607
BssMI	GATC	1 cut(s)	274
BssT1I	CCWWGG	1 cut(s)	607
Bst2UI	CCWGG	4 cut(s)	174, 253, 392, 548
Bst4CI	ACNGT	1 cut(s)	132
Bst6I	CTCTTC	2 cut(s)	57, 361
BstDEI	CTNAG	5 cut(s)	89, 237, 244, 362, 453
BstENI	CCTNNNNNAGG	1 cut(s)	171
BstF5I	GGATG	2 cut(s)	191, 556
BstFNI	CGCG	2 cut(s)	289, 321
BstHHI	GCGC	2 cut(s)	321, 355
BstKTI	GATC	1 cut(s)	277
BstMAI	GTCTC	2 cut(s)	316, 449
BstMBI	GATC	1 cut(s)	274
BstMWI	GCNNNNNNNGC	3 cut(s)	295, 378, 543
BstNI	CCWGG	4 cut(s)	174, 253, 392, 548
BstNSI	RCATGY	2 cut(s)	87, 546
BstSCI	CCNGG	4 cut(s)	172, 251, 390, 546
BstSFI	CTRYAG	1 cut(s)	561
BstSLI	GKGCMC	1 cut(s)	130
BstUI	CGCG	2 cut(s)	289, 321
BstV1I	GCAGC	2 cut(s)	2, 307
BsuRI	GGCC	3 cut(s)	154, 256, 447
BtsCI	GGATG	2 cut(s)	191, 556
BtsIMutI	CAGTG	2 cut(s)	121, 252
CfoI	GCGC	2 cut(s)	321, 355
CviAII	CATG	2 cut(s)	84, 543
CviJI	RGCY	9 cut(s)	142, 154, 179, 241, 256, 447, 612, 645, 684
CviKI_1	RGCY	9 cut(s)	142, 154, 179, 241, 256, 447, 612, 645, 684
DdeI	CTNAG	5 cut(s)	89, 237, 244, 362, 453
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
EaeI	YGGCCR	2 cut(s)	152, 445
Eam1104I	CTCTTC	2 cut(s)	57, 361
EarI	CTCTTC	2 cut(s)	57, 361
Eco130I	CCWWGG	1 cut(s)	607
Eco31I	GGTCTC	2 cut(s)	316, 449
Eco57I	CTGAAG	1 cut(s)	540
EcoNI	CCTNNNNNAGG	1 cut(s)	171
EcoRII	CCWGG	4 cut(s)	172, 251, 390, 546
EcoT14I	CCWWGG	1 cut(s)	607
ErhI	CCWWGG	1 cut(s)	607
FaeI	CATG	2 cut(s)	87, 546
FaiI	YATR	9 cut(s)	48, 70, 72, 85, 123, 490, 492, 544, 621
FaqI	GGGAC	1 cut(s)	373
FatI	CATG	2 cut(s)	83, 542
FauNDI	CATATG	1 cut(s)	490
FbaI	TGATCA	1 cut(s)	274
Fnu4HI	GCNGC	2 cut(s)	16, 296
FokI	GGATG	2 cut(s)	178, 563
Fsp4HI	GCNGC	2 cut(s)	16, 296
FspBI	CTAG	1 cut(s)	315
FspI	TGCGCA	1 cut(s)	354
GlaI	GCGC	2 cut(s)	320, 354
GluI	GCNGC	2 cut(s)	16, 296
HaeIII	GGCC	3 cut(s)	154, 256, 447
HapII	CCGG	1 cut(s)	195
HhaI	GCGC	2 cut(s)	321, 355
Hin1II	CATG	2 cut(s)	87, 546
Hin6I	GCGC	2 cut(s)	319, 353
HinP1I	GCGC	2 cut(s)	319, 353
HinfI	GANTC	2 cut(s)	334, 386
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	4 cut(s)	156, 252, 587, 596
Hpy166II	GTNNAC	1 cut(s)	128
Hpy188I	TCNGA	3 cut(s)	454, 463, 520
Hpy188III	TCNNGA	2 cut(s)	195, 214
Hpy8I	GTNNAC	1 cut(s)	128
HpyAV	CCTTC	1 cut(s)	168
HpyCH4III	ACNGT	1 cut(s)	132
HpyCH4V	TGCA	5 cut(s)	81, 128, 295, 343, 508
HpyF10VI	GCNNNNNNNGC	3 cut(s)	295, 378, 543
HpyF3I	CTNAG	5 cut(s)	89, 237, 244, 362, 453
Hsp92II	CATG	2 cut(s)	87, 546
HspAI	GCGC	2 cut(s)	319, 353
Kpn2I	TCCGGA	1 cut(s)	194
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	1 cut(s)	274
LguI	GCTCTTC	1 cut(s)	57
LmnI	GCTCC	1 cut(s)	176
Lsp1109I	GCAGC	2 cut(s)	2, 307
LweI	GCATC	2 cut(s)	259, 340
MaeI	CTAG	1 cut(s)	315
MalI	GATC	1 cut(s)	276
MboI	GATC	1 cut(s)	274
MhlI	GDGCHC	2 cut(s)	10, 130
MlsI	TGGCCA	1 cut(s)	447
MluCI	AATT	3 cut(s)	61, 220, 651
MluNI	TGGCCA	1 cut(s)	447
MlyI	GAGTC	2 cut(s)	328, 395
MmeI	TCCRAC	1 cut(s)	609
MnlI	CCTC	5 cut(s)	25, 177, 362, 469, 523
Mox20I	TGGCCA	1 cut(s)	447
MroI	TCCGGA	1 cut(s)	194
MscI	TGGCCA	1 cut(s)	447
MseI	TTAA	1 cut(s)	688
Msp20I	TGGCCA	1 cut(s)	447
MspI	CCGG	1 cut(s)	195
MspR9I	CCNGG	4 cut(s)	174, 253, 392, 548
MvaI	CCWGG	4 cut(s)	174, 253, 392, 548
MvnI	CGCG	2 cut(s)	289, 321
MwoI	GCNNNNNNNGC	3 cut(s)	295, 378, 543
NdeI	CATATG	1 cut(s)	490
NdeII	GATC	1 cut(s)	274
NlaIII	CATG	2 cut(s)	87, 546
NsbI	TGCGCA	1 cut(s)	354
NspI	RCATGY	2 cut(s)	87, 546
PasI	CCCWGGG	1 cut(s)	391
PciSI	GCTCTTC	1 cut(s)	57
PflMI	CCANNNNNTGG	1 cut(s)	656
PkrI	GCNGC	2 cut(s)	17, 297
PleI	GAGTC	2 cut(s)	328, 394
PpsI	GAGTC	2 cut(s)	328, 394
Psp6I	CCWGG	4 cut(s)	172, 251, 390, 546
PspGI	CCWGG	4 cut(s)	172, 251, 390, 546
SapI	GCTCTTC	1 cut(s)	57
SaqAI	TTAA	1 cut(s)	688
SatI	GCNGC	2 cut(s)	16, 296
Sau3AI	GATC	1 cut(s)	274
SchI	GAGTC	2 cut(s)	328, 395
ScrFI	CCNGG	4 cut(s)	174, 253, 392, 548
SduI	GDGCHC	2 cut(s)	10, 130
SetI	ASST	8 cut(s)	160, 169, 181, 243, 461, 471, 609, 647
SfaNI	GCATC	2 cut(s)	259, 340
SfcI	CTRYAG	1 cut(s)	561
Sse9I	AATT	3 cut(s)	61, 220, 651
SspMI	CTAG	1 cut(s)	315
StyD4I	CCNGG	4 cut(s)	172, 251, 390, 546
StyI	CCWWGG	1 cut(s)	607
TaaI	ACNGT	1 cut(s)	132
TasI	AATT	3 cut(s)	61, 220, 651
Tru1I	TTAA	1 cut(s)	688
Tru9I	TTAA	1 cut(s)	688
TscAI	CASTG	2 cut(s)	121, 252
TseI	GCWGC	2 cut(s)	15, 295
TspDTI	ATGAA	5 cut(s)	150, 441, 540, 567, 636
TspRI	CASTG	2 cut(s)	121, 252
Van91I	CCANNNNNTGG	1 cut(s)	656
VneI	GTGCAC	1 cut(s)	126
XagI	CCTNNNNNAGG	1 cut(s)	171
XceI	RCATGY	2 cut(s)	87, 546
XcmI	CCANNNNNNNNNTGG	1 cut(s)	605
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.