Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002004

Physical Location & Seq

Genomic Coordinates Forward (+)

3499508 .. 3500544

Gene Structure 1037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g05270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGGTTCGGCTTGTTCTTGCTTCCGGTCAAAAGATCATATGGAAGATAATAACGGTGACAATGCCAGTAATGGTGATGTTGGCTTCACTCAAAACTTGTACAACAAAATTGAGAAATATAGAGCATCAATCAGCAGTTGGAGAAGAGGTAATTTAGTCAATACATATAATGAGGTTGCCGACGCAACTTCAATACCCGATGGGGCACCTCAGGTTGCACAATCTGGCACTACTACTGTTGAAGTCCAAGTTGTCCAACCCCCTCCACAAGAGGGACTAAATGAAGGGTTAATATATCAGAACCCTAATGAGTCCTTAAAGAAGTCATTATCTGGAAAAGAAGCCACAGGGCTTATGTATATCTATGATTTATTAGAACGTGGCGAAGAATGTCCCACATGCCTGGAAGAATACACGACTGAAAATCCAAAGATAACAGTGGAGTGTTCTCACCATTACCACCTTTCTTGTATTTTTGAATGGATGGAGAGAAGCCCAACCTGCCCAATTTGCAGCCGGCTGATGAGGCAAAACTTGCATAACATTGGCACCCACTGTACACAAGTTTCTGCGAATATCACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

195

Amino Acids

21.61

Weight (kDa)

5.1

Isoelectric Point (pI)

55.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	129 - 171	1.9e-10	RING-H2 zinc finger domain
zf-RING_2	PF13639	130 - 171	6.3e-12	Ring finger domain
zf-C3HC4_2	PF13923	130 - 171	2.6e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	131 - 171	6.7e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	131 - 169	6e-07	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69085
fragaria_vesca	FvH4_4g22510 FvH4_4g22510 FvH4_4g22510 FvH4_4g22510 FvH4_4g29590
malus_domestica	MD13G1059100.v1.1 MD13G1131900.v1.1 MD16G1142200.v1.1
prunus_persica	Prupe.1G213500_v2.0.a1 Prupe.1G213500_v2.0.a1 Prupe.1G290700_v2.0.a1
pyrus_communis	pycom13g05270 pycom13g11490 pycom16g11270
rosa_chinensis	RchiOBHm_Chr4g0428741 RchiOBHm_Chr4g0437831
rosa_laevigata	RLG00000006409 RLG00000007130
rosa_multiflora	Rmu_sc0004193.1_g000009 Rmu_sc0010032.1_g000003
rosa_roxburghii	Rroxscaffold_1G00025140 Rroxscaffold_2G00125470 Rroxscaffold_4G00303240 Rroxscaffold_4G00325060 Rroxscaffold_5G00370400 Rroxscaffold_5G00379000 Rroxscaffold_7G00190540
rosa_rugosa	Rorug04G0227900 Rorug04G0228000 Rorug04G0304000 Rorug04G0304100
rosa_samantha	Rh4AG285300 Rh4AG356400 Rh4BG291300 Rh4BG367300 Rh4CG307100 Rh4CG381300 Rh4DG288400 Rh4DG361600 Rh7AG038600 Rh7CG039800 Rh7DG038300
rosa_wichuraiana	Rw4G024740 Rw4G031430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	509
AccB1I	GGYRCC	2 cut(s)	205, 548
AcvI	CACGTG	1 cut(s)	582
AfaI	GTAC	2 cut(s)	101, 559
AfiI	CCNNNNNNNGG	1 cut(s)	272
AgsI	TTSAA	3 cut(s)	192, 242, 479
AjnI	CCWGG	1 cut(s)	402
ApeKI	GCWGC	1 cut(s)	513
AsuHPI	GGTGA	3 cut(s)	68, 86, 443
AxyI	CCTNAGG	1 cut(s)	210
BaeGI	GKGCMC	1 cut(s)	208
BanI	GGYRCC	2 cut(s)	205, 548
BbrPI	CACGTG	1 cut(s)	582
BbvI	GCAGC	1 cut(s)	525
BccI	CCATC	2 cut(s)	194, 478
BciT130I	CCWGG	1 cut(s)	404
BfuAI	ACCTGC	1 cut(s)	509
BisI	GCNGC	1 cut(s)	514
BlsI	GCNGC	1 cut(s)	515
Bme1390I	CCNGG	1 cut(s)	404
BmiI	GGNNCC	2 cut(s)	207, 550
BmrFI	CCNGG	1 cut(s)	404
BmsI	GCATC	1 cut(s)	134
BsaAI	YACGTR	1 cut(s)	582
BsaWI	WCCGGW	1 cut(s)	24
BsaXI	ACNNNNNCTCC	2 cut(s)	133, 163
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse118I	RCCGGY	1 cut(s)	516
Bse1I	ACTGG	1 cut(s)	66
Bse21I	CCTNAGG	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	404
BseGI	GGATG	1 cut(s)	489
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMII	CTCAG	1 cut(s)	224
BseNI	ACTGG	1 cut(s)	66
BseSI	GKGCMC	1 cut(s)	208
BseXI	GCAGC	1 cut(s)	525
BshNI	GGYRCC	2 cut(s)	205, 548
BsiSI	CCGG	2 cut(s)	25, 517
BslFI	GGGAC	2 cut(s)	288, 378
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmFI	GGGAC	2 cut(s)	288, 378
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp1407I	TGTACA	2 cut(s)	99, 557
Bsp143I	GATC	1 cut(s)	34
BspCNI	CTCAG	1 cut(s)	223
BspLI	GGNNCC	2 cut(s)	207, 550
BspMI	ACCTGC	1 cut(s)	509
BspT107I	GGYRCC	2 cut(s)	205, 548
BsrFI	RCCGGY	1 cut(s)	516
BsrGI	TGTACA	2 cut(s)	99, 557
BsrI	ACTGG	1 cut(s)	66
BssAI	RCCGGY	1 cut(s)	516
BssMI	GATC	1 cut(s)	34
Bst2UI	CCWGG	1 cut(s)	404
Bst4CI	ACNGT	4 cut(s)	56, 238, 439, 557
Bst6I	CTCTTC	1 cut(s)	139
BstAPI	GCANNNNNTGC	1 cut(s)	535
BstAUI	TGTACA	2 cut(s)	99, 557
BstBAI	YACGTR	1 cut(s)	582
BstC8I	GCNNGC	1 cut(s)	518
BstDEI	CTNAG	1 cut(s)	210
BstF5I	GGATG	1 cut(s)	489
BstKTI	GATC	1 cut(s)	37
BstMBI	GATC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	4 cut(s)	501, 510, 526, 535
BstNI	CCWGG	1 cut(s)	404
BstNSI	RCATGY	1 cut(s)	402
BstSCI	CCNGG	1 cut(s)	402
BstSLI	GKGCMC	1 cut(s)	208
BstV1I	GCAGC	1 cut(s)	525
BstXI	CCANNNNNNTGG	1 cut(s)	403
Bsu36I	CCTNAGG	1 cut(s)	210
BtsCI	GGATG	1 cut(s)	489
BtsIMutI	CAGTG	2 cut(s)	444, 553
BveI	ACCTGC	1 cut(s)	509
Cac8I	GCNNGC	1 cut(s)	518
Cfr10I	RCCGGY	1 cut(s)	516
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	2 cut(s)	100, 558
CspCI	CAANNNNNGTGG	2 cut(s)	449, 484
CviAII	CATG	1 cut(s)	399
CviJI	RGCY	7 cut(s)	11, 84, 344, 352, 495, 516, 520
CviKI_1	RGCY	7 cut(s)	11, 84, 344, 352, 495, 516, 520
CviQI	GTAC	2 cut(s)	100, 558
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
Eam1104I	CTCTTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	139
Eco72I	CACGTG	1 cut(s)	582
Eco81I	CCTNAGG	1 cut(s)	210
EcoRII	CCWGG	1 cut(s)	402
FaeI	CATG	1 cut(s)	402
FaqI	GGGAC	2 cut(s)	288, 378
FatI	CATG	1 cut(s)	398
FauNDI	CATATG	1 cut(s)	39
Fnu4HI	GCNGC	1 cut(s)	514
FokI	GGATG	1 cut(s)	496
Fsp4HI	GCNGC	1 cut(s)	514
GluI	GCNGC	1 cut(s)	514
HapII	CCGG	2 cut(s)	25, 517
HgaI	GACGC	1 cut(s)	191
Hin1II	CATG	1 cut(s)	402
HinfI	GANTC	1 cut(s)	311
HpaII	CCGG	2 cut(s)	25, 517
HphI	GGTGA	3 cut(s)	68, 86, 443
Hpy166II	GTNNAC	1 cut(s)	560
Hpy188I	TCNGA	1 cut(s)	300
Hpy188III	TCNNGA	1 cut(s)	333
Hpy8I	GTNNAC	1 cut(s)	560
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	1 cut(s)	278
HpyCH4III	ACNGT	4 cut(s)	56, 238, 439, 557
HpyCH4IV	ACGT	2 cut(s)	379, 581
HpyCH4V	TGCA	3 cut(s)	218, 513, 538
HpyF10VI	GCNNNNNNNGC	4 cut(s)	501, 510, 526, 535
HpyF3I	CTNAG	1 cut(s)	210
HpySE526I	ACGT	2 cut(s)	379, 581
Hsp92II	CATG	1 cut(s)	402
KroI	GCCGGC	1 cut(s)	516
KroNI	GCCGGC	1 cut(s)	518
Kzo9I	GATC	1 cut(s)	34
Lsp1109I	GCAGC	1 cut(s)	525
LweI	GCATC	1 cut(s)	134
MaeII	ACGT	2 cut(s)	379, 581
MaeIII	GTNAC	1 cut(s)	56
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	4 cut(s)	56, 156, 398, 419
MhlI	GDGCHC	1 cut(s)	208
MluCI	AATT	3 cut(s)	108, 151, 507
MlyI	GAGTC	1 cut(s)	320
MmeI	TCCRAC	2 cut(s)	119, 280
MnlI	CCTC	6 cut(s)	140, 166, 219, 265, 273, 519
MroNI	GCCGGC	1 cut(s)	516
MseI	TTAA	2 cut(s)	290, 317
MspI	CCGG	2 cut(s)	25, 517
MspR9I	CCNGG	1 cut(s)	404
MvaI	CCWGG	1 cut(s)	404
MwoI	GCNNNNNNNGC	4 cut(s)	501, 510, 526, 535
NaeI	GCCGGC	1 cut(s)	518
NdeI	CATATG	1 cut(s)	39
NdeII	GATC	1 cut(s)	34
NgoMIV	GCCGGC	1 cut(s)	516
NlaIII	CATG	1 cut(s)	402
NlaIV	GGNNCC	2 cut(s)	207, 550
NmuCI	GTSAC	1 cut(s)	56
NspI	RCATGY	1 cut(s)	402
PdiI	GCCGGC	1 cut(s)	518
PkrI	GCNGC	1 cut(s)	515
PleI	GAGTC	1 cut(s)	319
PmaCI	CACGTG	1 cut(s)	582
PmlI	CACGTG	1 cut(s)	582
PpsI	GAGTC	1 cut(s)	319
Ppu21I	YACGTR	1 cut(s)	582
Psp6I	CCWGG	1 cut(s)	402
PspCI	CACGTG	1 cut(s)	582
PspGI	CCWGG	1 cut(s)	402
PspN4I	GGNNCC	2 cut(s)	207, 550
RsaI	GTAC	2 cut(s)	101, 559
RsaNI	GTAC	2 cut(s)	100, 558
SaqAI	TTAA	2 cut(s)	290, 317
SatI	GCNGC	1 cut(s)	514
Sau3AI	GATC	1 cut(s)	34
SchI	GAGTC	1 cut(s)	320
ScrFI	CCNGG	1 cut(s)	404
SduI	GDGCHC	1 cut(s)	208
SetI	ASST	8 cut(s)	151, 177, 211, 216, 382, 465, 503, 584
SfaNI	GCATC	1 cut(s)	134
Sse9I	AATT	3 cut(s)	108, 151, 507
StyD4I	CCNGG	1 cut(s)	402
TaaI	ACNGT	4 cut(s)	56, 238, 439, 557
TaiI	ACGT	2 cut(s)	382, 584
TasI	AATT	3 cut(s)	108, 151, 507
TatI	WGTACW	2 cut(s)	99, 557
Tru1I	TTAA	2 cut(s)	290, 317
Tru9I	TTAA	2 cut(s)	290, 317
TscAI	CASTG	2 cut(s)	444, 560
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	1 cut(s)	513
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	1 cut(s)	297
TspRI	CASTG	2 cut(s)	444, 560
XceI	RCATGY	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.