Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002004

Physical Location & Seq

Genomic Coordinates Forward (+)

50994767 .. 50995772

Gene Structure 1006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG288400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGGTTCTCTTTGCTGCTGTCCATGTGGTGATGAATTTGAAGAATATGCTCTTCCAAGCAATCCAGTGTACAGGCATTGCGCGTGCCTCAGATACTTCTTCCACCAGTTATTCAACGGGTATAGTGCACCGTTTCAAAGGCTTGATGGGAGATCAGTTCCATCACCTAACCAAGGGGCTACTTCTTCTGTCCCATCTGGAACTGGCACAACAGTAGCTAATAACTCCTCAAATGAGGCTCAATTCTCAGTGGCCAGGCCATCACCCTTTGATGCCGATCAGAGGTACTCACGTTTGCAGCGCGACGGCTTGATCTCTAGGCGTGAGAAGTCAATGACACATTTGCAGGAAGATGCACAACAAGTGAGAAGAAGCAGTTCTGGGACAGAGTCCCTGGGTTCGGGGAAGAAACGGAATGGAGTTGATACTGAAGAAGATTGTAAGTTAGGTCAATCAGAGACCTCAGAAAAGGATCTAGCATCAAAAGTCGCATATGGACTAACTCATGTGCAGCCATCTTCTGAAGATGATGATGTCTGCCCTACATGTCTTGATGGTAATTGCTTTAAGTTATCATTGTACAACCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

196

Amino Acids

21.51

Weight (kDa)

5.53

Isoelectric Point (pI)

63.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69085
fragaria_vesca	FvH4_4g22510 FvH4_4g22510 FvH4_4g22510 FvH4_4g22510 FvH4_4g29590
malus_domestica	MD13G1059100.v1.1 MD13G1131900.v1.1 MD16G1142200.v1.1
prunus_persica	Prupe.1G213500_v2.0.a1 Prupe.1G213500_v2.0.a1 Prupe.1G290700_v2.0.a1
pyrus_communis	pycom13g05270 pycom13g11490 pycom16g11270
rosa_chinensis	RchiOBHm_Chr4g0428741 RchiOBHm_Chr4g0437831
rosa_laevigata	RLG00000006409 RLG00000007130
rosa_multiflora	Rmu_sc0004193.1_g000009 Rmu_sc0010032.1_g000003
rosa_roxburghii	Rroxscaffold_1G00025140 Rroxscaffold_2G00125470 Rroxscaffold_4G00303240 Rroxscaffold_4G00325060 Rroxscaffold_5G00370400 Rroxscaffold_5G00379000 Rroxscaffold_7G00190540
rosa_rugosa	Rorug04G0227900 Rorug04G0228000 Rorug04G0304000 Rorug04G0304100
rosa_samantha	Rh4AG285300 Rh4AG356400 Rh4BG291300 Rh4BG367300 Rh4CG307100 Rh4CG381300 Rh4DG288400 Rh4DG361600 Rh7AG038600 Rh7CG039800 Rh7DG038300
rosa_wichuraiana	Rw4G024740 Rw4G031430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	83, 303
AclWI	GGATC	1 cut(s)	480
AcoI	YGGCCR	1 cut(s)	252
AcsI	RAATTY	1 cut(s)	35
AcuI	CTGAAG	2 cut(s)	450, 543
AfaI	GTAC	3 cut(s)	71, 287, 581
AfiI	CCNNNNNNNGG	3 cut(s)	173, 282, 400
AflIII	ACRYGT	1 cut(s)	545
AgsI	TTSAA	3 cut(s)	41, 115, 137
AjnI	CCWGG	2 cut(s)	254, 393
AluBI	AGCT	1 cut(s)	218
AluI	AGCT	1 cut(s)	218
Alw21I	GWGCWC	1 cut(s)	130
Alw26I	GTCTC	1 cut(s)	452
Alw44I	GTGCAC	1 cut(s)	126
AlwI	GGATC	1 cut(s)	480
AoxI	GGCC	2 cut(s)	252, 257
ApaLI	GTGCAC	1 cut(s)	126
ApeKI	GCWGC	3 cut(s)	15, 298, 511
ApoI	RAATTY	1 cut(s)	35
Asp700I	GAANNNNTTC	1 cut(s)	376
AspLEI	GCGC	2 cut(s)	83, 303
AsuHPI	GGTGA	3 cut(s)	41, 156, 255
BaeGI	GKGCMC	1 cut(s)	130
BaeI	ACNNNNGTAYC	2 cut(s)	277, 310
BalI	TGGCCA	1 cut(s)	254
Bbv12I	GWGCWC	1 cut(s)	130
BbvI	GCAGC	3 cut(s)	2, 310, 523
BccI	CCATC	6 cut(s)	140, 169, 202, 268, 523, 548
BceAI	ACGGC	1 cut(s)	322
BciT130I	CCWGG	2 cut(s)	256, 395
BcoDI	GTCTC	1 cut(s)	452
BfaI	CTAG	2 cut(s)	318, 476
BisI	GCNGC	3 cut(s)	16, 299, 512
BlsI	GCNGC	3 cut(s)	17, 300, 513
Bme1390I	CCNGG	2 cut(s)	256, 395
BmrFI	CCNGG	2 cut(s)	256, 395
BmsI	GCATC	3 cut(s)	262, 343, 488
BsaBI	GATNNNNATC	1 cut(s)	276
BsaI	GGTCTC	1 cut(s)	452
BsaJI	CCNNGG	3 cut(s)	172, 393, 394
Bsc4I	CCNNNNNNNGG	3 cut(s)	173, 282, 400
Bse1I	ACTGG	3 cut(s)	65, 106, 208
Bse3DI	GCAATG	1 cut(s)	76
Bse8I	GATNNNNATC	1 cut(s)	276
BseBI	CCWGG	2 cut(s)	256, 395
BseDI	CCNNGG	3 cut(s)	172, 393, 394
BseJI	GATNNNNATC	1 cut(s)	276
BseLI	CCNNNNNNNGG	3 cut(s)	173, 282, 400
BseMI	GCAATG	1 cut(s)	76
BseMII	CTCAG	3 cut(s)	103, 261, 477
BseNI	ACTGG	3 cut(s)	65, 106, 208
BseRI	GAGGAG	1 cut(s)	217
BseSI	GKGCMC	1 cut(s)	130
BseXI	GCAGC	3 cut(s)	2, 310, 523
BsgI	GTGCAG	1 cut(s)	530
Bsh1236I	CGCG	2 cut(s)	83, 303
BshFI	GGCC	2 cut(s)	254, 259
BsiHKAI	GWGCWC	1 cut(s)	130
BslFI	GGGAC	3 cut(s)	176, 376, 397
BslI	CCNNNNNNNGG	3 cut(s)	173, 282, 400
BsmAI	GTCTC	1 cut(s)	452
BsmFI	GGGAC	3 cut(s)	176, 376, 397
BsnI	GGCC	2 cut(s)	254, 259
Bso31I	GGTCTC	1 cut(s)	452
Bsp1286I	GDGCHC	1 cut(s)	130
Bsp1407I	TGTACA	2 cut(s)	69, 579
Bsp143I	GATC	4 cut(s)	152, 277, 312, 472
BspANI	GGCC	2 cut(s)	254, 259
BspCNI	CTCAG	3 cut(s)	102, 260, 476
BspFNI	CGCG	2 cut(s)	83, 303
BspPI	GGATC	1 cut(s)	480
BspQI	GCTCTTC	1 cut(s)	57
BspTNI	GGTCTC	1 cut(s)	452
BsrDI	GCAATG	1 cut(s)	76
BsrGI	TGTACA	2 cut(s)	69, 579
BsrI	ACTGG	3 cut(s)	65, 106, 208
BssECI	CCNNGG	3 cut(s)	172, 393, 394
BssMI	GATC	4 cut(s)	152, 277, 312, 472
BssT1I	CCWWGG	1 cut(s)	172
Bst2UI	CCWGG	2 cut(s)	256, 395
Bst4CI	ACNGT	2 cut(s)	132, 214
Bst6I	CTCTTC	1 cut(s)	57
BstAUI	TGTACA	2 cut(s)	69, 579
BstC8I	GCNNGC	1 cut(s)	85
BstDEI	CTNAG	3 cut(s)	89, 247, 463
BstENI	CCTNNNNNAGG	1 cut(s)	171
BstFNI	CGCG	2 cut(s)	83, 303
BstHHI	GCGC	2 cut(s)	83, 303
BstKTI	GATC	4 cut(s)	155, 280, 315, 475
BstMAI	GTCTC	1 cut(s)	452
BstMBI	GATC	4 cut(s)	152, 277, 312, 472
BstNI	CCWGG	2 cut(s)	256, 395
BstNSI	RCATGY	1 cut(s)	549
BstSCI	CCNGG	2 cut(s)	254, 393
BstSLI	GKGCMC	1 cut(s)	130
BstUI	CGCG	2 cut(s)	83, 303
BstV1I	GCAGC	3 cut(s)	2, 310, 523
BstX2I	RGATCY	1 cut(s)	472
BstYI	RGATCY	1 cut(s)	472
BsuRI	GGCC	2 cut(s)	254, 259
BtsIMutI	CAGTG	2 cut(s)	72, 255
Cac8I	GCNNGC	1 cut(s)	85
CfoI	GCGC	2 cut(s)	83, 303
Csp6I	GTAC	3 cut(s)	70, 286, 580
CviAII	CATG	3 cut(s)	24, 506, 546
CviJI	RGCY	8 cut(s)	142, 179, 218, 239, 254, 259, 309, 514
CviKI_1	RGCY	8 cut(s)	142, 179, 218, 239, 254, 259, 309, 514
CviQI	GTAC	3 cut(s)	70, 286, 580
DdeI	CTNAG	3 cut(s)	89, 247, 463
DpnI	GATC	4 cut(s)	154, 279, 314, 474
DpnII	GATC	4 cut(s)	152, 277, 312, 472
EaeI	YGGCCR	1 cut(s)	252
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Eco130I	CCWWGG	1 cut(s)	172
Eco31I	GGTCTC	1 cut(s)	452
Eco57I	CTGAAG	2 cut(s)	450, 543
EcoNI	CCTNNNNNAGG	1 cut(s)	171
EcoRII	CCWGG	2 cut(s)	254, 393
EcoT14I	CCWWGG	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	3 cut(s)	27, 509, 549
FaiI	YATR	7 cut(s)	25, 48, 123, 493, 495, 507, 547
FaqI	GGGAC	3 cut(s)	176, 376, 397
FatI	CATG	3 cut(s)	23, 505, 545
FauNDI	CATATG	1 cut(s)	493
Fnu4HI	GCNGC	3 cut(s)	16, 299, 512
Fsp4HI	GCNGC	3 cut(s)	16, 299, 512
FspBI	CTAG	2 cut(s)	318, 476
GlaI	GCGC	2 cut(s)	82, 302
GluI	GCNGC	3 cut(s)	16, 299, 512
HaeIII	GGCC	2 cut(s)	254, 259
HhaI	GCGC	2 cut(s)	83, 303
Hin1II	CATG	3 cut(s)	27, 509, 549
Hin6I	GCGC	2 cut(s)	81, 301
HinP1I	GCGC	2 cut(s)	81, 301
HinfI	GANTC	1 cut(s)	389
HphI	GGTGA	3 cut(s)	41, 156, 255
Hpy166II	GTNNAC	2 cut(s)	70, 128
Hpy188I	TCNGA	5 cut(s)	92, 282, 457, 466, 523
Hpy188III	TCNNGA	2 cut(s)	198, 551
Hpy8I	GTNNAC	2 cut(s)	70, 128
Hpy99I	CGWCG	1 cut(s)	308
HpyCH4III	ACNGT	2 cut(s)	132, 214
HpyCH4IV	ACGT	1 cut(s)	292
HpyCH4V	TGCA	5 cut(s)	128, 298, 346, 356, 511
HpyF3I	CTNAG	3 cut(s)	89, 247, 463
HpySE526I	ACGT	1 cut(s)	292
Hsp92II	CATG	3 cut(s)	27, 509, 549
HspAI	GCGC	2 cut(s)	81, 301
Kzo9I	GATC	4 cut(s)	152, 277, 312, 472
LguI	GCTCTTC	1 cut(s)	57
Lsp1109I	GCAGC	3 cut(s)	2, 310, 523
LweI	GCATC	3 cut(s)	262, 343, 488
MaeI	CTAG	2 cut(s)	318, 476
MaeII	ACGT	1 cut(s)	292
MalI	GATC	4 cut(s)	154, 279, 314, 474
MboI	GATC	4 cut(s)	152, 277, 312, 472
MflI	RGATCY	1 cut(s)	472
MhlI	GDGCHC	1 cut(s)	130
MlsI	TGGCCA	1 cut(s)	254
MluCI	AATT	3 cut(s)	35, 242, 559
MluNI	TGGCCA	1 cut(s)	254
MlyI	GAGTC	1 cut(s)	398
MnlI	CCTC	5 cut(s)	98, 229, 238, 276, 472
Mox20I	TGGCCA	1 cut(s)	254
MroXI	GAANNNNTTC	1 cut(s)	376
MscI	TGGCCA	1 cut(s)	254
MseI	TTAA	1 cut(s)	567
Msp20I	TGGCCA	1 cut(s)	254
MspR9I	CCNGG	2 cut(s)	256, 395
MvaI	CCWGG	2 cut(s)	256, 395
MvnI	CGCG	2 cut(s)	83, 303
NdeI	CATATG	1 cut(s)	493
NdeII	GATC	4 cut(s)	152, 277, 312, 472
NlaIII	CATG	3 cut(s)	27, 509, 549
NspI	RCATGY	1 cut(s)	549
PasI	CCCWGGG	1 cut(s)	394
PciI	ACATGT	1 cut(s)	545
PciSI	GCTCTTC	1 cut(s)	57
PdmI	GAANNNNTTC	1 cut(s)	376
PflFI	GACNNNGTC	1 cut(s)	388
PkrI	GCNGC	3 cut(s)	17, 300, 513
PleI	GAGTC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	397
PscI	ACATGT	1 cut(s)	545
Psp6I	CCWGG	2 cut(s)	254, 393
PspGI	CCWGG	2 cut(s)	254, 393
PsuI	RGATCY	1 cut(s)	472
PsyI	GACNNNGTC	1 cut(s)	388
RsaI	GTAC	3 cut(s)	71, 287, 581
RsaNI	GTAC	3 cut(s)	70, 286, 580
SapI	GCTCTTC	1 cut(s)	57
SaqAI	TTAA	1 cut(s)	567
SatI	GCNGC	3 cut(s)	16, 299, 512
Sau3AI	GATC	4 cut(s)	152, 277, 312, 472
SchI	GAGTC	1 cut(s)	398
ScrFI	CCNGG	2 cut(s)	256, 395
SduI	GDGCHC	1 cut(s)	130
SetI	ASST	6 cut(s)	169, 220, 287, 295, 451, 464
SfaNI	GCATC	3 cut(s)	262, 343, 488
Sse9I	AATT	3 cut(s)	35, 242, 559
SspMI	CTAG	2 cut(s)	318, 476
StyD4I	CCNGG	2 cut(s)	254, 393
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	2 cut(s)	132, 214
TaiI	ACGT	1 cut(s)	295
TasI	AATT	3 cut(s)	35, 242, 559
TatI	WGTACW	2 cut(s)	69, 579
Tru1I	TTAA	1 cut(s)	567
Tru9I	TTAA	1 cut(s)	567
TscAI	CASTG	2 cut(s)	72, 255
TseI	GCWGC	3 cut(s)	15, 298, 511
TspDTI	ATGAA	1 cut(s)	48
TspGWI	ACGGA	1 cut(s)	427
TspRI	CASTG	2 cut(s)	72, 255
Tth111I	GACNNNGTC	1 cut(s)	388
VneI	GTGCAC	1 cut(s)	126
XagI	CCTNNNNNAGG	1 cut(s)	171
XapI	RAATTY	1 cut(s)	35
XceI	RCATGY	1 cut(s)	549
XmnI	GAANNNNTTC	1 cut(s)	376
XspI	CTAG	2 cut(s)	318, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.