Rmu_sc0004193.1_g000009

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004193.1
OG0002004
Physical Location & Seq
Reverse (-)
30245 .. 30662
418 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004193.1_g000009.1.cds

Sequence Viewer

Length: 333 bp
atgggttctttttgttcctgctttaatgcggacgatcctttggataacacgcacaatgctaacaatgccaacaatgataaccgaatcatccctaacttgtacaacaaggttgggttcggcaatgaggaaacacattcatctactcaagtagcaccgaatgctgttattatggaatctgggattggcatggatgctgctactaatacaactattcaatcccttcctggtcctttgcttatcgaaaagaagattggaggacaccggtttctctatccttccaccatggaagaggaagaatgccctacatgtcttgaaggtaagcattgctcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

11.9

Weight (kDa)

4.7

Isoelectric Point (pI)

45.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 29
AclWI GGATC 1 cut(s) 29
AfaI GTAC 1 cut(s) 101
AflIII ACRYGT 1 cut(s) 305
AgeI ACCGGT 1 cut(s) 261
AgsI TTSAA 2 cut(s) 215, 314
AjnI CCWGG 1 cut(s) 223
AjuI GAANNNNNNNTTGG 4 cut(s) 165, 197, 234, 266
AlwI GGATC 1 cut(s) 29
ApeKI GCWGC 1 cut(s) 194
AsiGI ACCGGT 1 cut(s) 261
AspS9I GGNCC 1 cut(s) 227
AvaII GGWCC 1 cut(s) 227
BbvI GCAGC 1 cut(s) 181
BciT130I CCWGG 1 cut(s) 225
BisI GCNGC 1 cut(s) 195
BlsI GCNGC 1 cut(s) 196
Bme1390I CCNGG 1 cut(s) 225
Bme18I GGWCC 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 227
BmrFI CCNGG 1 cut(s) 225
BmsI GCATC 1 cut(s) 181
BpuEI CTTGAG 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 282
BsaWI WCCGGW 1 cut(s) 261
Bse118I RCCGGY 1 cut(s) 261
Bse3DI GCAATG 2 cut(s) 127, 322
BseBI CCWGG 1 cut(s) 225
BseDI CCNNGG 1 cut(s) 282
BseGI GGATG 2 cut(s) 87, 196
BseMI GCAATG 2 cut(s) 127, 322
BseXI GCAGC 1 cut(s) 181
BshTI ACCGGT 1 cut(s) 261
BsiSI CCGG 1 cut(s) 262
BsmI GAATGC 2 cut(s) 163, 302
Bsp1407I TGTACA 1 cut(s) 99
Bsp143I GATC 1 cut(s) 34
Bsp19I CCATGG 1 cut(s) 282
BspACI CCGC 1 cut(s) 29
BspPI GGATC 1 cut(s) 29
BsrDI GCAATG 2 cut(s) 127, 322
BsrFI RCCGGY 1 cut(s) 261
BsrGI TGTACA 1 cut(s) 99
BssAI RCCGGY 1 cut(s) 261
BssECI CCNNGG 1 cut(s) 282
BssMI GATC 1 cut(s) 34
BssT1I CCWWGG 1 cut(s) 282
Bst2UI CCWGG 1 cut(s) 225
Bst6I CTCTTC 1 cut(s) 282
BstAPI GCANNNNNTGC 1 cut(s) 158
BstAUI TGTACA 1 cut(s) 99
BstDSI CCRYGG 1 cut(s) 282
BstF5I GGATG 2 cut(s) 87, 196
BstKTI GATC 1 cut(s) 37
BstMBI GATC 1 cut(s) 34
BstMWI GCNNNNNNNGC 2 cut(s) 65, 158
BstNI CCWGG 1 cut(s) 225
BstNSI RCATGY 1 cut(s) 309
BstSCI CCNGG 1 cut(s) 223
BstV1I GCAGC 1 cut(s) 181
BtgI CCRYGG 1 cut(s) 282
BtsCI GGATG 2 cut(s) 87, 196
Cfr10I RCCGGY 1 cut(s) 261
Cfr13I GGNCC 1 cut(s) 227
Csp6I GTAC 1 cut(s) 100
CspAI ACCGGT 1 cut(s) 261
CviAII CATG 3 cut(s) 187, 283, 306
CviQI GTAC 1 cut(s) 100
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
Eco130I CCWWGG 1 cut(s) 282
Eco47I GGWCC 1 cut(s) 227
EcoRII CCWGG 1 cut(s) 223
EcoT14I CCWWGG 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 3 cut(s) 190, 286, 309
FaiI YATR 4 cut(s) 170, 188, 284, 307
FatI CATG 3 cut(s) 186, 282, 305
Fnu4HI GCNGC 1 cut(s) 195
FokI GGATG 2 cut(s) 74, 203
Fsp4HI GCNGC 1 cut(s) 195
GluI GCNGC 1 cut(s) 195
HapII CCGG 1 cut(s) 262
Hin1II CATG 3 cut(s) 190, 286, 309
HinfI GANTC 2 cut(s) 84, 173
HpaII CCGG 1 cut(s) 262
Hpy188III TCNNGA 1 cut(s) 311
HpyAV CCTTC 3 cut(s) 230, 285, 308
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 158
Hsp92II CATG 3 cut(s) 190, 286, 309
Kzo9I GATC 1 cut(s) 34
LpnPI CCDG 5 cut(s) 31, 162, 210, 237, 275
Lsp1109I GCAGC 1 cut(s) 181
LweI GCATC 1 cut(s) 181
MalI GATC 1 cut(s) 36
MboI GATC 1 cut(s) 34
MboII GAAGA 3 cut(s) 259, 299, 305
MnlI CCTC 3 cut(s) 118, 248, 283
MseI TTAA 2 cut(s) 24, 331
MspI CCGG 1 cut(s) 262
MspR9I CCNGG 1 cut(s) 225
Mva1269I GAATGC 2 cut(s) 163, 302
MvaI CCWGG 1 cut(s) 225
MwoI GCNNNNNNNGC 2 cut(s) 65, 158
NcoI CCATGG 1 cut(s) 282
NdeII GATC 1 cut(s) 34
NlaIII CATG 3 cut(s) 190, 286, 309
NspI RCATGY 1 cut(s) 309
PciI ACATGT 1 cut(s) 305
PctI GAATGC 2 cut(s) 163, 302
PfeI GAWTC 2 cut(s) 84, 173
PinAI ACCGGT 1 cut(s) 261
PkrI GCNGC 1 cut(s) 196
PscI ACATGT 1 cut(s) 305
Psp6I CCWGG 1 cut(s) 223
PspGI CCWGG 1 cut(s) 223
PspPI GGNCC 1 cut(s) 227
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
SaqAI TTAA 2 cut(s) 24, 331
SatI GCNGC 1 cut(s) 195
Sau3AI GATC 1 cut(s) 34
Sau96I GGNCC 1 cut(s) 227
ScrFI CCNGG 1 cut(s) 225
SetI ASST 2 cut(s) 111, 319
SfaNI GCATC 1 cut(s) 181
SinI GGWCC 1 cut(s) 227
SmlI CTYRAG 1 cut(s) 144
SmoI CTYRAG 1 cut(s) 144
SsiI CCGC 1 cut(s) 29
StyD4I CCNGG 1 cut(s) 223
StyI CCWWGG 1 cut(s) 282
TaqI TCGA 1 cut(s) 240
TatI WGTACW 1 cut(s) 99
TfiI GAWTC 2 cut(s) 84, 173
Tru1I TTAA 2 cut(s) 24, 331
Tru9I TTAA 2 cut(s) 24, 331
TseI GCWGC 1 cut(s) 194
TspDTI ATGAA 1 cut(s) 126
VpaK11BI GGWCC 1 cut(s) 227
XceI RCATGY 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.