Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002004

Physical Location & Seq

Genomic Coordinates Forward (+)

2610203 .. 2611189

Gene Structure 987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG038600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGGTGGTCTGATTGCTGTAAAATTTGTTTTTGCAAATTGGGTTTTGGTTTTGAACCCTCTGACTGCTTCAAAATTTGATCTTTTCAAATGGGTTGATCTTGTTTACTTGATTTATAAAAGAGAAAAGGATATTTGCATGGATGAGTTTCAATTTGGTGAGACTTCAAATTTATTTCTCTGCGTTTTGTATGTTGGTTATGGCCTTCTTATGAGGAAAGAATATACTCTAGAAAACCCCAAAATAATGACAAAATGCTCTCATCATTATCATCTTGGTTGTATATATGAGTGGATGGAGAGAAGTGAAAGTTGTCCTGTTTGTAGCAAGACTTTGTTCGTACTCATGAGTCATGATAATTTTCAGCAGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

124

Amino Acids

14.6

Weight (kDa)

6.4

Isoelectric Point (pI)

29.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_2	PF13923	77 - 108	1.3e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	77 - 108	2.4e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	78 - 108	6.4e-09	Ring finger domain
zf-rbx1	PF12678	79 - 108	2e-09	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69085
fragaria_vesca	FvH4_4g22510 FvH4_4g22510 FvH4_4g22510 FvH4_4g22510 FvH4_4g29590
malus_domestica	MD13G1059100.v1.1 MD13G1131900.v1.1 MD16G1142200.v1.1
prunus_persica	Prupe.1G213500_v2.0.a1 Prupe.1G213500_v2.0.a1 Prupe.1G290700_v2.0.a1
pyrus_communis	pycom13g05270 pycom13g11490 pycom16g11270
rosa_chinensis	RchiOBHm_Chr4g0428741 RchiOBHm_Chr4g0437831
rosa_laevigata	RLG00000006409 RLG00000007130
rosa_multiflora	Rmu_sc0004193.1_g000009 Rmu_sc0010032.1_g000003
rosa_roxburghii	Rroxscaffold_1G00025140 Rroxscaffold_2G00125470 Rroxscaffold_4G00303240 Rroxscaffold_4G00325060 Rroxscaffold_5G00370400 Rroxscaffold_5G00379000 Rroxscaffold_7G00190540
rosa_rugosa	Rorug04G0227900 Rorug04G0228000 Rorug04G0304000 Rorug04G0304100
rosa_samantha	Rh4AG285300 Rh4AG356400 Rh4BG291300 Rh4BG367300 Rh4CG307100 Rh4CG381300 Rh4DG288400 Rh4DG361600 Rh7AG038600 Rh7CG039800 Rh7DG038300
rosa_wichuraiana	Rw4G024740 Rw4G031430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	117
AcsI	RAATTY	3 cut(s)	23, 74, 169
AfaI	GTAC	1 cut(s)	342
AgsI	TTSAA	5 cut(s)	55, 72, 88, 152, 168
Alw26I	GTCTC	1 cut(s)	155
AoxI	GGCC	1 cut(s)	202
ApoI	RAATTY	3 cut(s)	23, 74, 169
AsuHPI	GGTGA	1 cut(s)	170
BccI	CCATC	1 cut(s)	289
BcoDI	GTCTC	1 cut(s)	155
BfaI	CTAG	1 cut(s)	230
BseGI	GGATG	2 cut(s)	148, 300
BshFI	GGCC	1 cut(s)	204
BsmAI	GTCTC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	204
Bsp143I	GATC	2 cut(s)	79, 97
BspANI	GGCC	1 cut(s)	204
BspHI	TCATGA	2 cut(s)	345, 352
BssMI	GATC	2 cut(s)	79, 97
BstF5I	GGATG	2 cut(s)	148, 300
BstKTI	GATC	2 cut(s)	82, 100
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	2 cut(s)	79, 97
BsuRI	GGCC	1 cut(s)	204
BtsCI	GGATG	2 cut(s)	148, 300
CciI	TCATGA	2 cut(s)	345, 352
Csp6I	GTAC	1 cut(s)	341
CviAII	CATG	3 cut(s)	139, 346, 353
CviJI	RGCY	1 cut(s)	204
CviKI_1	RGCY	1 cut(s)	204
CviQI	GTAC	1 cut(s)	341
DpnI	GATC	2 cut(s)	81, 99
DpnII	GATC	2 cut(s)	79, 97
FaeI	CATG	3 cut(s)	142, 349, 356
FatI	CATG	3 cut(s)	138, 345, 352
FokI	GGATG	2 cut(s)	155, 307
FspBI	CTAG	1 cut(s)	230
HaeIII	GGCC	1 cut(s)	204
Hin1II	CATG	3 cut(s)	142, 349, 356
HinfI	GANTC	1 cut(s)	349
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	2 cut(s)	12, 63
Hpy188III	TCNNGA	3 cut(s)	230, 346, 353
Hpy8I	GTNNAC	1 cut(s)	106
HpyAV	CCTTC	1 cut(s)	215
HpyCH4V	TGCA	2 cut(s)	35, 138
Hsp92II	CATG	3 cut(s)	142, 349, 356
Kzo9I	GATC	2 cut(s)	79, 97
LpnPI	CCDG	1 cut(s)	330
MaeI	CTAG	1 cut(s)	230
MalI	GATC	2 cut(s)	81, 99
MboI	GATC	2 cut(s)	79, 97
MluCI	AATT	6 cut(s)	23, 37, 74, 152, 169, 358
MlyI	GAGTC	1 cut(s)	358
MnlI	CCTC	2 cut(s)	69, 207
NdeII	GATC	2 cut(s)	79, 97
NlaIII	CATG	3 cut(s)	142, 349, 356
PagI	TCATGA	2 cut(s)	345, 352
PleI	GAGTC	1 cut(s)	357
PpsI	GAGTC	1 cut(s)	357
PsiI	TTATAA	1 cut(s)	117
RsaI	GTAC	1 cut(s)	342
RsaNI	GTAC	1 cut(s)	341
Sau3AI	GATC	2 cut(s)	79, 97
SchI	GAGTC	1 cut(s)	358
SgeI	CNNG	9 cut(s)	113, 121, 151, 242, 287, 329, 340, 358, 365
Sse9I	AATT	6 cut(s)	23, 37, 74, 152, 169, 358
SspMI	CTAG	1 cut(s)	230
TasI	AATT	6 cut(s)	23, 37, 74, 152, 169, 358
XapI	RAATTY	3 cut(s)	23, 74, 169
XbaI	TCTAGA	1 cut(s)	229
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.