Rorug04G0227900

Anaphase-promoting complex subunit 11 RING-H2 finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0002004
Physical Location & Seq
Reverse (-)
39217160 .. 39219682
2523 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0227900.1

Sequence Viewer

Length: 594 bp
ATGCTGGCGGTTTGGTTCAATGGCTTTGATGAGTTTGCTCGAAAAAAGCAATGGTGCAGGGTTGATGAGGAGGATAATCTTCTTCAAGGCATCAACAGCTATAGGGCTTCTGCCAACTTAACAGCCCTTACAAAGAATGACAATGCAGAGTGCCTGGCAGATGAGATAGCTGACCAATTCAAAAAGCAACCCTGTACAAACACCACAGGTTCCTTCACAGTACCAGGCACTGAAACCCAGTTTGCCAACTTTCCAGACCTTTTAGCCAAATGTCATTTGAATGTCTCAAACACAAGGGATGGAGTCATAATGCCTTCTTGCGTTCTGAATCTGGATCCTAGTCTCGTCCTTACCAACTTCACTAAGTCTCAGTACTCGTCGAATCTTAATCAGACAAATTTTACAGGAATTGGAATTGGTTCTGAAGATAACTGGATTGTTGTTATTTTGACCACGAGCACGCCCGAAGGAAGCTATGTTCCTGCACAAAGCACTGACAGTGCCACTGGCAGTGCCAGTTTAGGTTCCAAATCCAAGATTAGTTTGATTCAATACTTGCTGTGTTTGCTGATGGGGTTTGTCTTTCATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2 zf-rbx1

Protein Analysis

197

Amino Acids

21.55

Weight (kDa)

4.81

Isoelectric Point (pI)

29.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At5g19230 PF25884 24 - 150 1.3e-59 Uncharacterized GPI-anchored protein At5g19230-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 8
AclWI GGATC 2 cut(s) 329, 342
AcsI RAATTY 1 cut(s) 397
AcuI CTGAAG 1 cut(s) 444
AfaI GTAC 3 cut(s) 196, 222, 374
AgsI TTSAA 5 cut(s) 19, 86, 181, 280, 551
AjnI CCWGG 2 cut(s) 153, 223
AloI GAACNNNNNNTCC 2 cut(s) 462, 494
AluBI AGCT 3 cut(s) 99, 170, 474
AluI AGCT 3 cut(s) 99, 170, 474
Alw21I GWGCWC 1 cut(s) 461
Alw26I GTCTC 3 cut(s) 289, 347, 372
AlwI GGATC 2 cut(s) 329, 342
AlwNI CAGNNNCTG 1 cut(s) 230
ApoI RAATTY 1 cut(s) 397
Asp700I GAANNNNTTC 1 cut(s) 418
BamHI GGATCC 1 cut(s) 334
BauI CACGAG 1 cut(s) 454
Bbv12I GWGCWC 1 cut(s) 461
BccI CCATC 2 cut(s) 293, 565
BciT130I CCWGG 2 cut(s) 155, 225
BcoDI GTCTC 3 cut(s) 289, 347, 372
BfaI CTAG 1 cut(s) 339
BfmI CTRYAG 1 cut(s) 100
BmcAI AGTACT 1 cut(s) 374
Bme1390I CCNGG 2 cut(s) 155, 225
BmiI GGNNCC 3 cut(s) 211, 336, 526
BmrFI CCNGG 2 cut(s) 155, 225
BmrI ACTGGG 1 cut(s) 232
BmsI GCATC 1 cut(s) 99
BmuI ACTGGG 1 cut(s) 232
Bse1I ACTGG 4 cut(s) 238, 437, 511, 516
Bse3DI GCAATG 1 cut(s) 56
BseBI CCWGG 2 cut(s) 155, 225
BseGI GGATG 1 cut(s) 304
BseMI GCAATG 1 cut(s) 56
BseMII CTCAG 1 cut(s) 383
BseNI ACTGG 4 cut(s) 238, 437, 511, 516
BseRI GAGGAG 1 cut(s) 83
BsgI GTGCAG 2 cut(s) 76, 468
BsiHKAI GWGCWC 1 cut(s) 461
BsmAI GTCTC 3 cut(s) 289, 347, 372
Bsp1286I GDGCHC 1 cut(s) 461
Bsp1407I TGTACA 1 cut(s) 194
Bsp143I GATC 1 cut(s) 334
BspACI CCGC 1 cut(s) 8
BspCNI CTCAG 1 cut(s) 382
BspLI GGNNCC 3 cut(s) 211, 336, 526
BspPI GGATC 2 cut(s) 329, 342
BsrDI GCAATG 1 cut(s) 56
BsrGI TGTACA 1 cut(s) 194
BsrI ACTGG 4 cut(s) 238, 437, 511, 516
BssMI GATC 1 cut(s) 334
BssSI CACGAG 1 cut(s) 454
Bst2BI CACGAG 1 cut(s) 454
Bst2UI CCWGG 2 cut(s) 155, 225
Bst4CI ACNGT 2 cut(s) 220, 500
BstAUI TGTACA 1 cut(s) 194
BstC8I GCNNGC 2 cut(s) 6, 461
BstDEI CTNAG 2 cut(s) 363, 369
BstF5I GGATG 1 cut(s) 304
BstKTI GATC 1 cut(s) 337
BstMAI GTCTC 3 cut(s) 289, 347, 372
BstMBI GATC 1 cut(s) 334
BstMWI GCNNNNNNNGC 2 cut(s) 96, 565
BstNI CCWGG 2 cut(s) 155, 225
BstSCI CCNGG 2 cut(s) 153, 223
BstSFI CTRYAG 1 cut(s) 100
BstX2I RGATCY 1 cut(s) 334
BstYI RGATCY 1 cut(s) 334
BtsCI GGATG 1 cut(s) 304
BtsI GCAGTG 1 cut(s) 517
BtsIMutI CAGTG 5 cut(s) 228, 492, 504, 505, 517
Cac8I GCNNGC 2 cut(s) 6, 461
CaiI CAGNNNCTG 1 cut(s) 230
Csp6I GTAC 3 cut(s) 195, 221, 373
CviJI RGCY 7 cut(s) 24, 99, 107, 125, 170, 266, 474
CviKI_1 RGCY 7 cut(s) 24, 99, 107, 125, 170, 266, 474
CviQI GTAC 3 cut(s) 195, 221, 373
DdeI CTNAG 2 cut(s) 363, 369
DpnI GATC 1 cut(s) 336
DpnII GATC 1 cut(s) 334
Eco57I CTGAAG 1 cut(s) 444
EcoRII CCWGG 2 cut(s) 153, 223
FaiI YATR 3 cut(s) 102, 308, 477
FokI GGATG 1 cut(s) 311
FspBI CTAG 1 cut(s) 339
HinfI GANTC 4 cut(s) 303, 328, 382, 547
Hpy188I TCNGA 3 cut(s) 327, 393, 424
Hpy188III TCNNGA 2 cut(s) 254, 332
Hpy99I CGWCG 1 cut(s) 382
HpyAV CCTTC 3 cut(s) 223, 324, 461
HpyCH4III ACNGT 2 cut(s) 220, 500
HpyCH4V TGCA 3 cut(s) 57, 146, 485
HpyF10VI GCNNNNNNNGC 2 cut(s) 96, 565
HpyF3I CTNAG 2 cut(s) 363, 369
Kzo9I GATC 1 cut(s) 334
LweI GCATC 1 cut(s) 99
MaeI CTAG 1 cut(s) 339
MalI GATC 1 cut(s) 336
MboI GATC 1 cut(s) 334
MboII GAAGA 3 cut(s) 71, 74, 437
MflI RGATCY 1 cut(s) 334
MhlI GDGCHC 1 cut(s) 461
MluCI AATT 4 cut(s) 176, 397, 408, 414
MlyI GAGTC 1 cut(s) 312
MnlI CCTC 2 cut(s) 61, 64
MroXI GAANNNNTTC 1 cut(s) 418
MseI TTAA 2 cut(s) 119, 387
MslI CAYNNNNRTG 1 cut(s) 279
MspR9I CCNGG 2 cut(s) 155, 225
MvaI CCWGG 2 cut(s) 155, 225
MwoI GCNNNNNNNGC 2 cut(s) 96, 565
NdeII GATC 1 cut(s) 334
NlaIV GGNNCC 3 cut(s) 211, 336, 526
PdmI GAANNNNTTC 1 cut(s) 418
PfeI GAWTC 3 cut(s) 328, 382, 547
PleI GAGTC 1 cut(s) 311
PpsI GAGTC 1 cut(s) 311
Psp6I CCWGG 2 cut(s) 153, 223
PspGI CCWGG 2 cut(s) 153, 223
PspN4I GGNNCC 3 cut(s) 211, 336, 526
PstNI CAGNNNCTG 1 cut(s) 230
PsuI RGATCY 1 cut(s) 334
RsaI GTAC 3 cut(s) 196, 222, 374
RsaNI GTAC 3 cut(s) 195, 221, 373
RseI CAYNNNNRTG 1 cut(s) 279
SaqAI TTAA 2 cut(s) 119, 387
Sau3AI GATC 1 cut(s) 334
ScaI AGTACT 1 cut(s) 374
SchI GAGTC 1 cut(s) 312
ScrFI CCNGG 2 cut(s) 155, 225
SduI GDGCHC 1 cut(s) 461
SetI ASST 6 cut(s) 101, 172, 211, 261, 476, 526
SfaNI GCATC 1 cut(s) 99
SfcI CTRYAG 1 cut(s) 100
SmiMI CAYNNNNRTG 1 cut(s) 279
Sse9I AATT 4 cut(s) 176, 397, 408, 414
SsiI CCGC 1 cut(s) 8
SspMI CTAG 1 cut(s) 339
StyD4I CCNGG 2 cut(s) 153, 223
TaaI ACNGT 2 cut(s) 220, 500
TaqI TCGA 2 cut(s) 40, 380
TasI AATT 4 cut(s) 176, 397, 408, 414
TatI WGTACW 2 cut(s) 194, 372
TfiI GAWTC 3 cut(s) 328, 382, 547
Tru1I TTAA 2 cut(s) 119, 387
Tru9I TTAA 2 cut(s) 119, 387
TscAI CASTG 5 cut(s) 235, 499, 505, 511, 517
TspDTI ATGAA 1 cut(s) 575
TspRI CASTG 5 cut(s) 235, 499, 505, 511, 517
XapI RAATTY 1 cut(s) 397
XmnI GAANNNNTTC 1 cut(s) 418
XspI CTAG 1 cut(s) 339
ZrmI AGTACT 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.