E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G69085 |
| fragaria_vesca | FvH4_4g22510 FvH4_4g22510 FvH4_4g22510 FvH4_4g22510 FvH4_4g29590 |
| malus_domestica | MD13G1059100.v1.1 MD13G1131900.v1.1 MD16G1142200.v1.1 |
| prunus_persica | Prupe.1G213500_v2.0.a1 Prupe.1G213500_v2.0.a1 Prupe.1G290700_v2.0.a1 |
| pyrus_communis | pycom13g05270 pycom13g11490 pycom16g11270 |
| rosa_chinensis | RchiOBHm_Chr4g0428741 RchiOBHm_Chr4g0437831 |
| rosa_laevigata | RLG00000006409 RLG00000007130 |
| rosa_multiflora | Rmu_sc0004193.1_g000009 Rmu_sc0010032.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00025140 Rroxscaffold_2G00125470 Rroxscaffold_4G00303240 Rroxscaffold_4G00325060 Rroxscaffold_5G00370400 Rroxscaffold_5G00379000 Rroxscaffold_7G00190540 |
| rosa_rugosa | Rorug04G0227900 Rorug04G0228000 Rorug04G0304000 Rorug04G0304100 |
| rosa_samantha | Rh4AG285300 Rh4AG356400 Rh4BG291300 Rh4BG367300 Rh4CG307100 Rh4CG381300 Rh4DG288400 Rh4DG361600 Rh7AG038600 Rh7CG039800 Rh7DG038300 |
| rosa_wichuraiana | Rw4G024740 Rw4G031430 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 74 |
| AciI | CCGC | 2 cut(s) | 72, 140 |
| AfaI | GTAC | 2 cut(s) | 112, 237 |
| AgsI | TTSAA | 4 cut(s) | 14, 22, 154, 314 |
| AluBI | AGCT | 1 cut(s) | 233 |
| AluI | AGCT | 1 cut(s) | 233 |
| AoxI | GGCC | 1 cut(s) | 67 |
| AspLEI | GCGC | 1 cut(s) | 189 |
| AspS9I | GGNCC | 1 cut(s) | 68 |
| AsuHPI | GGTGA | 2 cut(s) | 40, 128 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 246, 279 |
| BccI | CCATC | 1 cut(s) | 153 |
| BfaI | CTAG | 2 cut(s) | 251, 325 |
| BmgT120I | GGNCC | 1 cut(s) | 68 |
| BmiI | GGNNCC | 1 cut(s) | 70 |
| BoxI | GACNNNNGTC | 1 cut(s) | 176 |
| BpuEI | CTTGAG | 1 cut(s) | 288 |
| BsaJI | CCNNGG | 1 cut(s) | 51 |
| BseDI | CCNNGG | 1 cut(s) | 51 |
| BseGI | GGATG | 3 cut(s) | 67, 164, 265 |
| BseMII | CTCAG | 1 cut(s) | 204 |
| BseRI | GAGGAG | 2 cut(s) | 68, 71 |
| BshFI | GGCC | 1 cut(s) | 69 |
| BsmI | GAATGC | 1 cut(s) | 146 |
| BsnI | GGCC | 1 cut(s) | 69 |
| Bsp1407I | TGTACA | 1 cut(s) | 235 |
| BspACI | CCGC | 2 cut(s) | 72, 140 |
| BspANI | GGCC | 1 cut(s) | 69 |
| BspCNI | CTCAG | 1 cut(s) | 203 |
| BspLI | GGNNCC | 1 cut(s) | 70 |
| BsrBI | CCGCTC | 1 cut(s) | 74 |
| BsrGI | TGTACA | 1 cut(s) | 235 |
| BssECI | CCNNGG | 1 cut(s) | 51 |
| Bst4CI | ACNGT | 1 cut(s) | 240 |
| Bst6I | CTCTTC | 1 cut(s) | 78 |
| BstAUI | TGTACA | 1 cut(s) | 235 |
| BstC8I | GCNNGC | 2 cut(s) | 76, 144 |
| BstDEI | CTNAG | 1 cut(s) | 190 |
| BstF5I | GGATG | 3 cut(s) | 67, 164, 265 |
| BstHHI | GCGC | 1 cut(s) | 189 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 75 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 176 |
| BsuRI | GGCC | 1 cut(s) | 69 |
| BtsCI | GGATG | 3 cut(s) | 67, 164, 265 |
| Cac8I | GCNNGC | 2 cut(s) | 76, 144 |
| CfoI | GCGC | 1 cut(s) | 189 |
| Cfr13I | GGNCC | 1 cut(s) | 68 |
| Csp6I | GTAC | 2 cut(s) | 111, 236 |
| CviAII | CATG | 2 cut(s) | 176, 182 |
| CviJI | RGCY | 3 cut(s) | 69, 233, 302 |
| CviKI_1 | RGCY | 3 cut(s) | 69, 233, 302 |
| CviQI | GTAC | 2 cut(s) | 111, 236 |
| DdeI | CTNAG | 1 cut(s) | 190 |
| Eam1104I | CTCTTC | 1 cut(s) | 78 |
| EarI | CTCTTC | 1 cut(s) | 78 |
| FaeI | CATG | 2 cut(s) | 179, 185 |
| FaiI | YATR | 7 cut(s) | 90, 177, 183, 223, 279, 281, 291 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 32 |
| FatI | CATG | 2 cut(s) | 175, 181 |
| FauI | CCCGC | 2 cut(s) | 79, 147 |
| FokI | GGATG | 3 cut(s) | 74, 171, 272 |
| FspBI | CTAG | 2 cut(s) | 251, 325 |
| GlaI | GCGC | 1 cut(s) | 188 |
| HaeIII | GGCC | 1 cut(s) | 69 |
| HhaI | GCGC | 1 cut(s) | 189 |
| Hin1II | CATG | 2 cut(s) | 179, 185 |
| Hin6I | GCGC | 1 cut(s) | 187 |
| HinP1I | GCGC | 1 cut(s) | 187 |
| HinfI | GANTC | 3 cut(s) | 172, 206, 286 |
| HphI | GGTGA | 2 cut(s) | 40, 128 |
| Hpy188I | TCNGA | 1 cut(s) | 193 |
| Hpy188III | TCNNGA | 1 cut(s) | 151 |
| HpyCH4III | ACNGT | 1 cut(s) | 240 |
| HpyCH4V | TGCA | 1 cut(s) | 146 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 75 |
| HpyF3I | CTNAG | 1 cut(s) | 190 |
| Hsp92II | CATG | 2 cut(s) | 179, 185 |
| HspAI | GCGC | 1 cut(s) | 187 |
| MaeI | CTAG | 2 cut(s) | 251, 325 |
| MaeIII | GTNAC | 2 cut(s) | 46, 169 |
| MbiI | CCGCTC | 1 cut(s) | 74 |
| MboII | GAAGA | 2 cut(s) | 95, 107 |
| MluCI | AATT | 2 cut(s) | 118, 270 |
| MlyI | GAGTC | 1 cut(s) | 166 |
| MnlI | CCTC | 4 cut(s) | 46, 49, 52, 292 |
| MslI | CAYNNNNRTG | 2 cut(s) | 180, 294 |
| Mva1269I | GAATGC | 1 cut(s) | 146 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 75 |
| NlaIII | CATG | 2 cut(s) | 179, 185 |
| NlaIV | GGNNCC | 1 cut(s) | 70 |
| NmuCI | GTSAC | 2 cut(s) | 46, 169 |
| PctI | GAATGC | 1 cut(s) | 146 |
| PfeI | GAWTC | 2 cut(s) | 206, 286 |
| PleI | GAGTC | 1 cut(s) | 166 |
| PpsI | GAGTC | 1 cut(s) | 166 |
| PshAI | GACNNNNGTC | 1 cut(s) | 176 |
| PspN4I | GGNNCC | 1 cut(s) | 70 |
| PspPI | GGNCC | 1 cut(s) | 68 |
| RsaI | GTAC | 2 cut(s) | 112, 237 |
| RsaNI | GTAC | 2 cut(s) | 111, 236 |
| RseI | CAYNNNNRTG | 2 cut(s) | 180, 294 |
| Sau96I | GGNCC | 1 cut(s) | 68 |
| SchI | GAGTC | 1 cut(s) | 166 |
| SetI | ASST | 2 cut(s) | 37, 235 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 180, 294 |
| SmlI | CTYRAG | 1 cut(s) | 303 |
| SmoI | CTYRAG | 1 cut(s) | 303 |
| Sse9I | AATT | 2 cut(s) | 118, 270 |
| SsiI | CCGC | 2 cut(s) | 72, 140 |
| SspMI | CTAG | 2 cut(s) | 251, 325 |
| TaaI | ACNGT | 1 cut(s) | 240 |
| TasI | AATT | 2 cut(s) | 118, 270 |
| TatI | WGTACW | 1 cut(s) | 235 |
| TfiI | GAWTC | 2 cut(s) | 206, 286 |
| TseFI | GTSAC | 2 cut(s) | 46, 169 |
| Tsp45I | GTSAC | 2 cut(s) | 46, 169 |
| TspDTI | ATGAA | 2 cut(s) | 108, 278 |
| TspGWI | ACGGA | 1 cut(s) | 272 |
| XspI | CTAG | 2 cut(s) | 251, 325 |