Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002004

Physical Location & Seq

Genomic Coordinates Reverse (-)

47938595 .. 47944915

Gene Structure 6321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0304100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGTTGGATGCTCTTAATCTCAAAATTCAACACCTTTATGTGCCGCAGCCGCCGCCTTTGTCTCCTGGAGCCAGAGTATTACCTTCTTCTCTAGACGTTAAAGTAAACCCTGTTGAACAGAAGCTCACTGTCAAATTTTTTCTTCACGCTACTGGAAACATTGCTGCAAAATTTTCTTATGACCAGGCGTTGGTAGCTGCTTTCTGCAAGATCCCCAAAGCCGCATGGAATGCAAAAGAAAGGTTATGGATGTTCCCTGTGTCTTCTTTGTCATCGGCAGAAAAAGTTCTTCATGAAGTATCAGGGGTCAATGTTGAGATAGAGAACTTAGATCCCTTAGTCCACCGGGCCATTGCTGCTGCGTCTGTTGTTCCAGATATTCGAGACCTGTATGACAGGATACCTAGCTTTATTGAATCAAAGCTCTTGGGATTTCAGCGAGAAGGTGTAAGGTTTATCTTGCAGCATGGAGGGCGTGCATTCCTTGCTGATGAAATGGGACTGGGGAAGACTTTACAGGCTATTGCTGTGGCTTCCTGCATTCGTGACTCATGGCCTGTTCTTATACTCACACCATCTTCATTGCGTCTGCAATGGGCCTCTATGATTCAACAATGGATGAACATTCCTCCATCAGATATTAGTAATCTGCTGATGGCATCAGATTTTAAGATTGTGATTGCAGATGAGTCGCACTTTCTGAAAAATGCTCGAGCAAAAAGGACAACTGCTTCCCTGCCTGTCATCAAGAAGGCTCAATATGCAATACTGTTAAGTGGAACTCCTGCATTGTCCCGACCGATCGAACTATATACGCAGCTGGAAGCCTTGTATCCTGATGTATACAAAAATGTACATGAATATGGCAAACGATATTGCAAGGGTGGAACATTTGGAATGTATCAAGGTGCAAGTAACCATGAAGAATTGCATAATTTGTTGAAGGCAACAGTGATGATTCGGAGACTCAAAAATGATGTACTCTCTGAACTTCCTGTGAAGCGCAGACAACAGCCAAAGTTAGATGATGAAGGAGCTCCAGGATTAATTTACAATTTAAACAAAAGAGAAGGGGCTCCAGAATTTAAGAACTACCCGTTTGGAATTTTCGTAATGCTTAGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

375

Amino Acids

41.87

Weight (kDa)

9.29

Isoelectric Point (pI)

48.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	145 - 209	8.2e-10	SNF2-related domain
SNF2-rel_dom	PF00176	217 - 340	7.3e-13	SNF2-related domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69085
fragaria_vesca	FvH4_4g22510 FvH4_4g22510 FvH4_4g22510 FvH4_4g22510 FvH4_4g29590
malus_domestica	MD13G1059100.v1.1 MD13G1131900.v1.1 MD16G1142200.v1.1
prunus_persica	Prupe.1G213500_v2.0.a1 Prupe.1G213500_v2.0.a1 Prupe.1G290700_v2.0.a1
pyrus_communis	pycom13g05270 pycom13g11490 pycom16g11270
rosa_chinensis	RchiOBHm_Chr4g0428741 RchiOBHm_Chr4g0437831
rosa_laevigata	RLG00000006409 RLG00000007130
rosa_multiflora	Rmu_sc0004193.1_g000009 Rmu_sc0010032.1_g000003
rosa_roxburghii	Rroxscaffold_1G00025140 Rroxscaffold_2G00125470 Rroxscaffold_4G00303240 Rroxscaffold_4G00325060 Rroxscaffold_5G00370400 Rroxscaffold_5G00379000 Rroxscaffold_7G00190540
rosa_rugosa	Rorug04G0227900 Rorug04G0228000 Rorug04G0304000 Rorug04G0304100
rosa_samantha	Rh4AG285300 Rh4AG356400 Rh4BG291300 Rh4BG367300 Rh4CG307100 Rh4CG381300 Rh4DG288400 Rh4DG361600 Rh7AG038600 Rh7CG039800 Rh7DG038300
rosa_wichuraiana	Rw4G024740 Rw4G031430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	190
AccI	GTMKAC	1 cut(s)	843
AciI	CCGC	4 cut(s)	44, 50, 53, 222
AclWI	GGATC	2 cut(s)	205, 326
AcsI	RAATTY	5 cut(s)	24, 134, 170, 1082, 1104
AfaI	GTAC	2 cut(s)	855, 981
AfiI	CCNNNNNNNGG	1 cut(s)	190
AgsI	TTSAA	5 cut(s)	29, 116, 416, 611, 943
AjnI	CCWGG	3 cut(s)	64, 183, 1039
AluBI	AGCT	6 cut(s)	124, 197, 408, 424, 820, 1037
AluI	AGCT	6 cut(s)	124, 197, 408, 424, 820, 1037
Alw21I	GWGCWC	1 cut(s)	1039
Alw26I	GTCTC	3 cut(s)	66, 378, 958
AlwI	GGATC	2 cut(s)	205, 326
Ama87I	CYCGRG	1 cut(s)	711
AoxI	GGCC	3 cut(s)	348, 554, 597
ApeKI	GCWGC	7 cut(s)	46, 164, 197, 356, 359, 463, 817
ApoI	RAATTY	5 cut(s)	24, 134, 170, 1082, 1104
AseI	ATTAAT	1 cut(s)	1046
Asp700I	GAANNNNTTC	1 cut(s)	285
AspLEI	GCGC	1 cut(s)	1005
AspS9I	GGNCC	2 cut(s)	348, 597
AsuC2I	CCSGG	1 cut(s)	347
AvaI	CYCGRG	1 cut(s)	711
BanII	GRGCYC	2 cut(s)	1039, 1078
BbsI	GAAGAC	2 cut(s)	255, 515
Bbv12I	GWGCWC	1 cut(s)	1039
BbvI	GCAGC	7 cut(s)	58, 151, 184, 343, 346, 475, 829
BccI	CCATC	3 cut(s)	583, 640, 649
BcgI	CGANNNNNNTGC	2 cut(s)	672, 706
BciT130I	CCWGG	3 cut(s)	66, 185, 1041
BciVI	GTATCC	2 cut(s)	393, 843
BcnI	CCSGG	1 cut(s)	347
BcoDI	GTCTC	3 cut(s)	66, 378, 958
BfaI	CTAG	2 cut(s)	92, 405
BfuI	GTATCC	2 cut(s)	393, 843
Bme1390I	CCNGG	4 cut(s)	66, 185, 347, 1041
BmeT110I	CYCGRG	1 cut(s)	711
BmgT120I	GGNCC	2 cut(s)	348, 597
BmiI	GGNNCC	2 cut(s)	70, 1077
BmrFI	CCNGG	4 cut(s)	66, 185, 347, 1041
BmrI	ACTGGG	1 cut(s)	512
BmsI	GCATC	1 cut(s)	668
BmuI	ACTGGG	1 cut(s)	512
BpiI	GAAGAC	2 cut(s)	255, 515
BpmI	CTGGAG	3 cut(s)	87, 1023, 1062
BpuMI	CCSGG	1 cut(s)	347
BsaI	GGTCTC	1 cut(s)	378
BsaXI	ACNNNNNCTCC	2 cut(s)	60, 90
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse1I	ACTGG	2 cut(s)	157, 507
Bse3DI	GCAATG	4 cut(s)	159, 351, 581, 599
BseBI	CCWGG	3 cut(s)	66, 185, 1041
BseGI	GGATG	3 cut(s)	13, 255, 624
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseMI	GCAATG	4 cut(s)	159, 351, 581, 599
BseNI	ACTGG	2 cut(s)	157, 507
BseXI	GCAGC	7 cut(s)	58, 151, 184, 343, 346, 475, 829
Bsh1285I	CGRYCG	2 cut(s)	800, 804
BshFI	GGCC	3 cut(s)	350, 556, 599
BsiEI	CGRYCG	2 cut(s)	800, 804
BsiHKAI	GWGCWC	1 cut(s)	1039
BsiHKCI	CYCGRG	1 cut(s)	711
BsiSI	CCGG	1 cut(s)	346
BslFI	GGGAC	2 cut(s)	513, 778
BslI	CCNNNNNNNGG	1 cut(s)	190
BsmAI	GTCTC	3 cut(s)	66, 378, 958
BsmFI	GGGAC	2 cut(s)	513, 778
BsmI	GAATGC	3 cut(s)	235, 479, 540
BsnI	GGCC	3 cut(s)	350, 556, 599
Bso31I	GGTCTC	1 cut(s)	378
BsoBI	CYCGRG	1 cut(s)	711
Bsp1286I	GDGCHC	2 cut(s)	1039, 1078
Bsp1407I	TGTACA	1 cut(s)	853
Bsp143I	GATC	3 cut(s)	210, 331, 801
BspACI	CCGC	4 cut(s)	44, 50, 53, 222
BspANI	GGCC	3 cut(s)	350, 556, 599
BspHI	TCATGA	1 cut(s)	292
BspLI	GGNNCC	2 cut(s)	70, 1077
BspPI	GGATC	2 cut(s)	205, 326
BspTNI	GGTCTC	1 cut(s)	378
BsrDI	GCAATG	4 cut(s)	159, 351, 581, 599
BsrGI	TGTACA	1 cut(s)	853
BsrI	ACTGG	2 cut(s)	157, 507
BssMI	GATC	3 cut(s)	210, 331, 801
BssNAI	GTATAC	1 cut(s)	844
Bst1107I	GTATAC	1 cut(s)	844
Bst2UI	CCWGG	3 cut(s)	66, 185, 1041
Bst4CI	ACNGT	3 cut(s)	130, 771, 952
BstAPI	GCANNNNNTGC	2 cut(s)	230, 485
BstAUI	TGTACA	1 cut(s)	853
BstC8I	GCNNGC	1 cut(s)	477
BstDEI	CTNAG	3 cut(s)	328, 337, 1118
BstF5I	GGATG	3 cut(s)	13, 255, 624
BstHHI	GCGC	1 cut(s)	1005
BstKTI	GATC	3 cut(s)	213, 334, 804
BstMAI	GTCTC	3 cut(s)	66, 378, 958
BstMBI	GATC	3 cut(s)	210, 331, 801
BstMCI	CGRYCG	2 cut(s)	800, 804
BstMWI	GCNNNNNNNGC	8 cut(s)	49, 52, 194, 230, 356, 472, 485, 761
BstNI	CCWGG	3 cut(s)	66, 185, 1041
BstSCI	CCNGG	4 cut(s)	64, 183, 345, 1039
BstV1I	GCAGC	7 cut(s)	58, 151, 184, 343, 346, 475, 829
BstV2I	GAAGAC	2 cut(s)	255, 515
BstX2I	RGATCY	2 cut(s)	210, 331
BstYI	RGATCY	2 cut(s)	210, 331
BstZ17I	GTATAC	1 cut(s)	844
BsuI	GTATCC	2 cut(s)	393, 843
BsuRI	GGCC	3 cut(s)	350, 556, 599
BtsCI	GGATG	3 cut(s)	13, 255, 624
BtsIMutI	CAGTG	2 cut(s)	126, 957
Cac8I	GCNNGC	1 cut(s)	477
CciI	TCATGA	1 cut(s)	292
CfoI	GCGC	1 cut(s)	1005
Cfr13I	GGNCC	2 cut(s)	348, 597
CseI	GACGC	2 cut(s)	351, 575
Csp6I	GTAC	2 cut(s)	854, 980
CviAII	CATG	6 cut(s)	225, 293, 467, 552, 857, 920
CviQI	GTAC	2 cut(s)	854, 980
DdeI	CTNAG	3 cut(s)	328, 337, 1118
DpnI	GATC	3 cut(s)	212, 333, 803
DpnII	GATC	3 cut(s)	210, 331, 801
DraI	TTTAAA	1 cut(s)	1059
Ecl136II	GAGCTC	1 cut(s)	1037
Eco24I	GRGCYC	2 cut(s)	1039, 1078
Eco31I	GGTCTC	1 cut(s)	378
Eco53kI	GAGCTC	1 cut(s)	1037
Eco88I	CYCGRG	1 cut(s)	711
EcoICRI	GAGCTC	1 cut(s)	1037
EcoRII	CCWGG	3 cut(s)	64, 183, 1039
EcoT38I	GRGCYC	2 cut(s)	1039, 1078
FaeI	CATG	6 cut(s)	228, 296, 470, 555, 860, 923
FaqI	GGGAC	2 cut(s)	513, 778
FatI	CATG	6 cut(s)	224, 292, 466, 551, 856, 919
FblI	GTMKAC	1 cut(s)	843
FokI	GGATG	3 cut(s)	20, 262, 631
FriOI	GRGCYC	2 cut(s)	1039, 1078
FspBI	CTAG	2 cut(s)	92, 405
GlaI	GCGC	1 cut(s)	1004
GsuI	CTGGAG	3 cut(s)	87, 1023, 1062
HaeIII	GGCC	3 cut(s)	350, 556, 599
HapII	CCGG	1 cut(s)	346
HgaI	GACGC	2 cut(s)	351, 575
HhaI	GCGC	1 cut(s)	1005
Hin1II	CATG	6 cut(s)	228, 296, 470, 555, 860, 923
Hin6I	GCGC	1 cut(s)	1003
HinP1I	GCGC	1 cut(s)	1003
HinfI	GANTC	6 cut(s)	416, 548, 607, 689, 958, 966
HpaII	CCGG	1 cut(s)	346
Hpy166II	GTNNAC	3 cut(s)	106, 343, 844
Hpy188I	TCNGA	5 cut(s)	637, 664, 702, 963, 988
Hpy188III	TCNNGA	9 cut(s)	92, 293, 374, 383, 545, 748, 795, 836, 1079
Hpy8I	GTNNAC	3 cut(s)	106, 343, 844
HpyAV	CCTTC	6 cut(s)	93, 437, 745, 937, 1025, 1064
HpyCH4III	ACNGT	3 cut(s)	130, 771, 952
HpyCH4IV	ACGT	1 cut(s)	96
HpyF10VI	GCNNNNNNNGC	8 cut(s)	49, 52, 194, 230, 356, 472, 485, 761
HpyF3I	CTNAG	3 cut(s)	328, 337, 1118
HpySE526I	ACGT	1 cut(s)	96
Hsp92II	CATG	6 cut(s)	228, 296, 470, 555, 860, 923
HspAI	GCGC	1 cut(s)	1003
Kzo9I	GATC	3 cut(s)	210, 331, 801
LmnI	GCTCC	4 cut(s)	68, 1034, 1042, 1081
Lsp1109I	GCAGC	7 cut(s)	58, 151, 184, 343, 346, 475, 829
LweI	GCATC	1 cut(s)	668
MaeI	CTAG	2 cut(s)	92, 405
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	2 cut(s)	545, 914
MalI	GATC	3 cut(s)	212, 333, 803
MboI	GATC	3 cut(s)	210, 331, 801
MboII	GAAGA	7 cut(s)	78, 134, 255, 281, 520, 570, 935
MflI	RGATCY	2 cut(s)	210, 331
MhlI	GDGCHC	2 cut(s)	1039, 1078
MluCI	AATT	9 cut(s)	24, 134, 170, 926, 934, 1047, 1054, 1082, 1104
MlyI	GAGTC	3 cut(s)	542, 698, 960
MnlI	CCTC	3 cut(s)	464, 610, 639
MroXI	GAANNNNTTC	1 cut(s)	285
MseI	TTAA	8 cut(s)	15, 99, 669, 773, 1046, 1058, 1086, 1126
MslI	CAYNNNNRTG	2 cut(s)	36, 861
MspA1I	CMGCKG	1 cut(s)	820
MspI	CCGG	1 cut(s)	346
MspR9I	CCNGG	4 cut(s)	66, 185, 347, 1041
Mva1269I	GAATGC	3 cut(s)	235, 479, 540
MvaI	CCWGG	3 cut(s)	66, 185, 1041
MwoI	GCNNNNNNNGC	8 cut(s)	49, 52, 194, 230, 356, 472, 485, 761
NciI	CCSGG	1 cut(s)	347
NdeII	GATC	3 cut(s)	210, 331, 801
NlaIII	CATG	6 cut(s)	228, 296, 470, 555, 860, 923
NlaIV	GGNNCC	2 cut(s)	70, 1077
NmuCI	GTSAC	1 cut(s)	545
PaeR7I	CTCGAG	1 cut(s)	711
PagI	TCATGA	1 cut(s)	292
PctI	GAATGC	3 cut(s)	235, 479, 540
PdmI	GAANNNNTTC	1 cut(s)	285
PfeI	GAWTC	3 cut(s)	416, 607, 958
PflMI	CCANNNNNTGG	1 cut(s)	190
PfoI	TCCNGGA	2 cut(s)	64, 1039
Ple19I	CGATCG	1 cut(s)	804
PleI	GAGTC	3 cut(s)	542, 697, 960
PpsI	GAGTC	3 cut(s)	542, 697, 960
PshBI	ATTAAT	1 cut(s)	1046
Psp124BI	GAGCTC	1 cut(s)	1039
Psp6I	CCWGG	3 cut(s)	64, 183, 1039
PspGI	CCWGG	3 cut(s)	64, 183, 1039
PspN4I	GGNNCC	2 cut(s)	70, 1077
PspPI	GGNCC	2 cut(s)	348, 597
PspXI	VCTCGAGB	1 cut(s)	711
PsuI	RGATCY	2 cut(s)	210, 331
PvuI	CGATCG	1 cut(s)	804
PvuII	CAGCTG	1 cut(s)	820
RsaI	GTAC	2 cut(s)	855, 981
RsaNI	GTAC	2 cut(s)	854, 980
RseI	CAYNNNNRTG	2 cut(s)	36, 861
SacI	GAGCTC	1 cut(s)	1039
SaqAI	TTAA	8 cut(s)	15, 99, 669, 773, 1046, 1058, 1086, 1126
Sau3AI	GATC	3 cut(s)	210, 331, 801
Sau96I	GGNCC	2 cut(s)	348, 597
SchI	GAGTC	3 cut(s)	542, 698, 960
ScrFI	CCNGG	4 cut(s)	66, 185, 347, 1041
SduI	GDGCHC	2 cut(s)	1039, 1078
SfaNI	GCATC	1 cut(s)	668
Sfr274I	CTCGAG	1 cut(s)	711
SlaI	CTCGAG	1 cut(s)	711
SmiMI	CAYNNNNRTG	2 cut(s)	36, 861
SmlI	CTYRAG	1 cut(s)	711
SmoI	CTYRAG	1 cut(s)	711
Sse9I	AATT	9 cut(s)	24, 134, 170, 926, 934, 1047, 1054, 1082, 1104
SsiI	CCGC	4 cut(s)	44, 50, 53, 222
SspMI	CTAG	2 cut(s)	92, 405
SstI	GAGCTC	1 cut(s)	1039
StyD4I	CCNGG	4 cut(s)	64, 183, 345, 1039
TaaI	ACNGT	3 cut(s)	130, 771, 952
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	3 cut(s)	382, 712, 804
TaqII	GACCGA	1 cut(s)	814
TasI	AATT	9 cut(s)	24, 134, 170, 926, 934, 1047, 1054, 1082, 1104
TatI	WGTACW	2 cut(s)	853, 979
TauI	GCSGC	4 cut(s)	46, 52, 55, 224
TfiI	GAWTC	3 cut(s)	416, 607, 958
Tru1I	TTAA	8 cut(s)	15, 99, 669, 773, 1046, 1058, 1086, 1126
Tru9I	TTAA	8 cut(s)	15, 99, 669, 773, 1046, 1058, 1086, 1126
TscAI	CASTG	2 cut(s)	133, 957
TseFI	GTSAC	1 cut(s)	545
TseI	GCWGC	7 cut(s)	46, 164, 197, 356, 359, 463, 817
Tsp45I	GTSAC	1 cut(s)	545
TspDTI	ATGAA	8 cut(s)	281, 309, 507, 570, 635, 873, 936, 1044
TspRI	CASTG	2 cut(s)	133, 957
Van91I	CCANNNNNTGG	1 cut(s)	190
VspI	ATTAAT	1 cut(s)	1046
XapI	RAATTY	5 cut(s)	24, 134, 170, 1082, 1104
XbaI	TCTAGA	1 cut(s)	91
XhoI	CTCGAG	1 cut(s)	711
XmiI	GTMKAC	1 cut(s)	843
XmnI	GAANNNNTTC	1 cut(s)	285
XspI	CTAG	2 cut(s)	92, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.