Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002004

Physical Location & Seq

Genomic Coordinates Forward (+)

30693204 .. 30703364

Gene Structure 10161 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00190540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGTGAATGGCGAAGTTGAACTTTCGAAACCAGAGGAATTTGTTGCTTTAGTCACTAAGGAGGAGGATGTTGGCCTGTACCGCTTGGAAGAGTATGATGAAGAAAATCCAAGAAATACCACTAAATGCGACCACCATTTTCACCTTGCTTGCATTCATGAATGGATGGAGAGAAGTGACTCATGTCCGTGTGTGATCGGAATTGATATTGATCCTCCTATTGATTTATGGTATCAATTAGAAGAAACAGATGGTGATCAGCTGCTTAGGGTAGTGGTACTCGAGTCACAACATTATCGTGAGTTTCGTTATGTTCATTTCGAACTTTACGATTTGGAATTATTTAGTTTGGATTTTGTTGTTCCCACTCTCTACGAGGCTCAAGATAAGGCCGAAATGCCCTATCCCAACCCCAAAGAGAGTAGGCCACCCAATAGCCTAGGCAAGCTTTGCCGCAACATTGACCCGACACACTCAATACCACATCGAGGGCACCGTGCAATTCTTGGAAGTGCCAACGCACCGGACCTCCACCGTAAAGCTGATTTCCAAGAAGGACACCTAAACCTTGATATCCATCACCAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

196

Amino Acids

22.87

Weight (kDa)

4.89

Isoelectric Point (pI)

44.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	29 - 64	1.1e-06	Ring finger domain
zf-rbx1	PF12678	35 - 63	2.3e-08	RING-H2 zinc finger domain
zf-C3HC4_2	PF13923	35 - 63	5.9e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69085
fragaria_vesca	FvH4_4g22510 FvH4_4g22510 FvH4_4g22510 FvH4_4g22510 FvH4_4g29590
malus_domestica	MD13G1059100.v1.1 MD13G1131900.v1.1 MD16G1142200.v1.1
prunus_persica	Prupe.1G213500_v2.0.a1 Prupe.1G213500_v2.0.a1 Prupe.1G290700_v2.0.a1
pyrus_communis	pycom13g05270 pycom13g11490 pycom16g11270
rosa_chinensis	RchiOBHm_Chr4g0428741 RchiOBHm_Chr4g0437831
rosa_laevigata	RLG00000006409 RLG00000007130
rosa_multiflora	Rmu_sc0004193.1_g000009 Rmu_sc0010032.1_g000003
rosa_roxburghii	Rroxscaffold_1G00025140 Rroxscaffold_2G00125470 Rroxscaffold_4G00303240 Rroxscaffold_4G00325060 Rroxscaffold_5G00370400 Rroxscaffold_5G00379000 Rroxscaffold_7G00190540
rosa_rugosa	Rorug04G0227900 Rorug04G0228000 Rorug04G0304000 Rorug04G0304100
rosa_samantha	Rh4AG285300 Rh4AG356400 Rh4BG291300 Rh4BG367300 Rh4CG307100 Rh4CG381300 Rh4DG288400 Rh4DG361600 Rh7AG038600 Rh7CG039800 Rh7DG038300
rosa_wichuraiana	Rw4G024740 Rw4G031430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	492
AciI	CCGC	2 cut(s)	82, 454
AclWI	GGATC	1 cut(s)	206
AcsI	RAATTY	2 cut(s)	38, 585
AfaI	GTAC	2 cut(s)	80, 279
AfiI	CCNNNNNNNGG	1 cut(s)	488
AgsI	TTSAA	1 cut(s)	20
AluBI	AGCT	3 cut(s)	262, 448, 542
AluI	AGCT	3 cut(s)	262, 448, 542
AlwI	GGATC	1 cut(s)	206
Ama87I	CYCGRG	1 cut(s)	281
AoxI	GGCC	3 cut(s)	73, 390, 425
ApeKI	GCWGC	1 cut(s)	262
ApoI	RAATTY	2 cut(s)	38, 585
AspA2I	CCTAGG	1 cut(s)	439
AspS9I	GGNCC	1 cut(s)	526
AsuHPI	GGTGA	4 cut(s)	16, 134, 266, 572
AsuII	TTCGAA	2 cut(s)	26, 321
AvaI	CYCGRG	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	526
AvrII	CCTAGG	1 cut(s)	439
BaeGI	GKGCMC	1 cut(s)	495
BaeI	ACNNNNGTAYC	2 cut(s)	269, 302
BanI	GGYRCC	1 cut(s)	492
BbvI	GCAGC	1 cut(s)	249
BccI	CCATC	3 cut(s)	160, 245, 585
BclI	TGATCA	1 cut(s)	256
BfaI	CTAG	1 cut(s)	440
BisI	GCNGC	2 cut(s)	263, 454
BlnI	CCTAGG	1 cut(s)	439
BlsI	GCNGC	2 cut(s)	264, 455
Bme18I	GGWCC	1 cut(s)	526
BmeT110I	CYCGRG	1 cut(s)	281
BmgT120I	GGNCC	1 cut(s)	526
BmiI	GGNNCC	1 cut(s)	494
BoxI	GACNNNNGTC	1 cut(s)	183
Bpu10I	CCTNAGC	1 cut(s)	266
Bpu14I	TTCGAA	2 cut(s)	26, 321
BpuEI	CTTGAG	1 cut(s)	366
BsaBI	GATNNNNATC	3 cut(s)	210, 255, 576
BsaJI	CCNNGG	1 cut(s)	439
BsaWI	WCCGGW	1 cut(s)	523
BsaXI	ACNNNNNCTCC	2 cut(s)	513, 543
Bsc4I	CCNNNNNNNGG	1 cut(s)	488
Bse8I	GATNNNNATC	3 cut(s)	210, 255, 576
BseDI	CCNNGG	1 cut(s)	439
BseGI	GGATG	2 cut(s)	73, 171
BseJI	GATNNNNATC	3 cut(s)	210, 255, 576
BseLI	CCNNNNNNNGG	1 cut(s)	488
BseRI	GAGGAG	1 cut(s)	77
BseSI	GKGCMC	1 cut(s)	495
BseXI	GCAGC	1 cut(s)	249
BshFI	GGCC	3 cut(s)	75, 392, 427
BshNI	GGYRCC	1 cut(s)	492
BsiHKCI	CYCGRG	1 cut(s)	281
BsiSI	CCGG	1 cut(s)	524
BslI	CCNNNNNNNGG	1 cut(s)	488
BsmI	GAATGC	1 cut(s)	153
BsnI	GGCC	3 cut(s)	75, 392, 427
BsoBI	CYCGRG	1 cut(s)	281
Bsp119I	TTCGAA	2 cut(s)	26, 321
Bsp1286I	GDGCHC	1 cut(s)	495
Bsp143I	GATC	3 cut(s)	195, 211, 256
BspACI	CCGC	2 cut(s)	82, 454
BspANI	GGCC	3 cut(s)	75, 392, 427
BspHI	TCATGA	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	494
BspPI	GGATC	1 cut(s)	206
BspT104I	TTCGAA	2 cut(s)	26, 321
BspT107I	GGYRCC	1 cut(s)	492
BssECI	CCNNGG	1 cut(s)	439
BssMI	GATC	3 cut(s)	195, 211, 256
BssT1I	CCWWGG	1 cut(s)	439
Bst4CI	ACNGT	2 cut(s)	497, 536
Bst6I	CTCTTC	1 cut(s)	84
BstAPI	GCANNNNNTGC	1 cut(s)	450
BstBI	TTCGAA	2 cut(s)	26, 321
BstC8I	GCNNGC	2 cut(s)	151, 446
BstDEI	CTNAG	2 cut(s)	57, 266
BstF5I	GGATG	2 cut(s)	73, 171
BstKTI	GATC	3 cut(s)	198, 214, 259
BstMBI	GATC	3 cut(s)	195, 211, 256
BstMWI	GCNNNNNNNGC	2 cut(s)	81, 450
BstPAI	GACNNNNGTC	1 cut(s)	183
BstSLI	GKGCMC	1 cut(s)	495
BstV1I	GCAGC	1 cut(s)	249
BsuRI	GGCC	3 cut(s)	75, 392, 427
BtsCI	GGATG	2 cut(s)	73, 171
Cac8I	GCNNGC	2 cut(s)	151, 446
CciI	TCATGA	1 cut(s)	157
Cfr13I	GGNCC	1 cut(s)	526
Csp6I	GTAC	2 cut(s)	79, 278
CviAII	CATG	2 cut(s)	158, 183
CviJI	RGCY	8 cut(s)	75, 262, 380, 392, 427, 438, 448, 542
CviKI_1	RGCY	8 cut(s)	75, 262, 380, 392, 427, 438, 448, 542
CviQI	GTAC	2 cut(s)	79, 278
DdeI	CTNAG	2 cut(s)	57, 266
DpnI	GATC	3 cut(s)	197, 213, 258
DpnII	GATC	3 cut(s)	195, 211, 256
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	439
Eco32I	GATATC	1 cut(s)	574
Eco47I	GGWCC	1 cut(s)	526
Eco88I	CYCGRG	1 cut(s)	281
EcoRV	GATATC	1 cut(s)	574
EcoT14I	CCWWGG	1 cut(s)	439
ErhI	CCWWGG	1 cut(s)	439
FaeI	CATG	2 cut(s)	161, 186
FaiI	YATR	5 cut(s)	96, 159, 184, 229, 312
FalI	AAGNNNNNCTT	1 cut(s)	38
FatI	CATG	2 cut(s)	157, 182
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	2 cut(s)	263, 454
FokI	GGATG	2 cut(s)	80, 178
Fsp4HI	GCNGC	2 cut(s)	263, 454
FspBI	CTAG	1 cut(s)	440
GluI	GCNGC	2 cut(s)	263, 454
HaeIII	GGCC	3 cut(s)	75, 392, 427
HapII	CCGG	1 cut(s)	524
Hin1II	CATG	2 cut(s)	161, 186
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	2 cut(s)	179, 284
HpaII	CCGG	1 cut(s)	524
HphI	GGTGA	4 cut(s)	16, 134, 266, 572
Hpy188I	TCNGA	1 cut(s)	200
Hpy188III	TCNNGA	3 cut(s)	158, 299, 383
HpyAV	CCTTC	1 cut(s)	548
HpyCH4III	ACNGT	2 cut(s)	497, 536
HpyCH4V	TGCA	2 cut(s)	153, 500
HpyF10VI	GCNNNNNNNGC	2 cut(s)	81, 450
HpyF3I	CTNAG	2 cut(s)	57, 266
Hsp92II	CATG	2 cut(s)	161, 186
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	3 cut(s)	195, 211, 256
LpnPI	CCDG	3 cut(s)	45, 89, 537
Lsp1109I	GCAGC	1 cut(s)	249
MaeI	CTAG	1 cut(s)	440
MaeIII	GTNAC	3 cut(s)	52, 176, 285
MalI	GATC	3 cut(s)	197, 213, 258
MboI	GATC	3 cut(s)	195, 211, 256
MboII	GAAGA	3 cut(s)	101, 113, 254
MhlI	GDGCHC	1 cut(s)	495
MluCI	AATT	6 cut(s)	38, 201, 236, 338, 501, 585
MlyI	GAGTC	2 cut(s)	173, 293
MnlI	CCTC	7 cut(s)	28, 55, 58, 225, 370, 482, 539
MslI	CAYNNNNRTG	2 cut(s)	187, 297
MspA1I	CMGCKG	1 cut(s)	262
MspI	CCGG	1 cut(s)	524
Mva1269I	GAATGC	1 cut(s)	153
MwoI	GCNNNNNNNGC	2 cut(s)	81, 450
NdeII	GATC	3 cut(s)	195, 211, 256
NlaIII	CATG	2 cut(s)	161, 186
NlaIV	GGNNCC	1 cut(s)	494
NmuCI	GTSAC	3 cut(s)	52, 176, 285
NspV	TTCGAA	2 cut(s)	26, 321
PaeR7I	CTCGAG	1 cut(s)	281
PagI	TCATGA	1 cut(s)	157
PcsI	WCGNNNNNNNCGW	3 cut(s)	304, 327, 493
PctI	GAATGC	1 cut(s)	153
PkrI	GCNGC	2 cut(s)	264, 455
PleI	GAGTC	2 cut(s)	173, 292
PpsI	GAGTC	2 cut(s)	173, 292
PshAI	GACNNNNGTC	1 cut(s)	183
PspN4I	GGNNCC	1 cut(s)	494
PspPI	GGNCC	1 cut(s)	526
PspXI	VCTCGAGB	1 cut(s)	281
PvuII	CAGCTG	1 cut(s)	262
RsaI	GTAC	2 cut(s)	80, 279
RsaNI	GTAC	2 cut(s)	79, 278
RseI	CAYNNNNRTG	2 cut(s)	187, 297
SatI	GCNGC	2 cut(s)	263, 454
Sau3AI	GATC	3 cut(s)	195, 211, 256
Sau96I	GGNCC	1 cut(s)	526
SchI	GAGTC	2 cut(s)	173, 293
SduI	GDGCHC	1 cut(s)	495
SetI	ASST	7 cut(s)	147, 264, 450, 531, 544, 564, 570
Sfr274I	CTCGAG	1 cut(s)	281
SfuI	TTCGAA	2 cut(s)	26, 321
SinI	GGWCC	1 cut(s)	526
SlaI	CTCGAG	1 cut(s)	281
SmiMI	CAYNNNNRTG	2 cut(s)	187, 297
SmlI	CTYRAG	2 cut(s)	281, 381
SmoI	CTYRAG	2 cut(s)	281, 381
Sse9I	AATT	6 cut(s)	38, 201, 236, 338, 501, 585
SsiI	CCGC	2 cut(s)	82, 454
SspMI	CTAG	1 cut(s)	440
StyI	CCWWGG	1 cut(s)	439
TaaI	ACNGT	2 cut(s)	497, 536
TaqI	TCGA	4 cut(s)	26, 282, 321, 487
TasI	AATT	6 cut(s)	38, 201, 236, 338, 501, 585
TauI	GCSGC	1 cut(s)	456
TseFI	GTSAC	3 cut(s)	52, 176, 285
TseI	GCWGC	1 cut(s)	262
Tsp45I	GTSAC	3 cut(s)	52, 176, 285
TspDTI	ATGAA	4 cut(s)	114, 146, 174, 305
TspGWI	ACGGA	1 cut(s)	177
VpaK11BI	GGWCC	1 cut(s)	526
XapI	RAATTY	2 cut(s)	38, 585
XhoI	CTCGAG	1 cut(s)	281
XmaJI	CCTAGG	1 cut(s)	439
XspI	CTAG	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.