Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002004

Physical Location & Seq

Genomic Coordinates Forward (+)

29658927 .. 29660715

Gene Structure 1789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g29590.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGGTTGTTTTTTCTCTTGCTTTGATGTGAACGATCCTTTGGATAACACGCAGAATGCTAACAATGCCAATGATGGTAACCGGATCATCATCCCTAATTTGTACAACAAGATTGCGTCCGTTAACGAGGTAGCTCTTGGAAGTATACAATGTGAGACTGGCAGGGATGCTGCCACTGCTACTGCTATTATCCGATCCCTTCCTGGTGATCCCTTTCTTATTGAAAAGGAGATTGGAGGACAACGTTACCTTTACCCTTCGTCGATAGAAGAGGAAGAATGCCCTACATGTCTTGAAGAATATACACCTGACAATCCAAAGATAAAAACAAAGTGTTGTCACCATTTCCACCTTGCTTGTATATATGAATGGTTGGAGAGAAAGCAAACTTGTCCAGTTTGCAGCCAGGTGATGTCATTCAATGATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

144

Amino Acids

16.04

Weight (kDa)

4.67

Isoelectric Point (pI)

52.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	91 - 134	4.1e-10	RING-H2 zinc finger domain
zf-RING_2	PF13639	93 - 134	8.3e-12	Ring finger domain
zf-ANAPC11	PF12861	94 - 141	1.7e-07	Anaphase-promoting complex subunit 11 RING-H2 finger
zf-RING_UBOX	PF13445	94 - 132	7e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69085
fragaria_vesca	FvH4_4g22510 FvH4_4g22510 FvH4_4g22510 FvH4_4g22510 FvH4_4g29590
malus_domestica	MD13G1059100.v1.1 MD13G1131900.v1.1 MD16G1142200.v1.1
prunus_persica	Prupe.1G213500_v2.0.a1 Prupe.1G213500_v2.0.a1 Prupe.1G290700_v2.0.a1
pyrus_communis	pycom13g05270 pycom13g11490 pycom16g11270
rosa_chinensis	RchiOBHm_Chr4g0428741 RchiOBHm_Chr4g0437831
rosa_laevigata	RLG00000006409 RLG00000007130
rosa_multiflora	Rmu_sc0004193.1_g000009 Rmu_sc0010032.1_g000003
rosa_roxburghii	Rroxscaffold_1G00025140 Rroxscaffold_2G00125470 Rroxscaffold_4G00303240 Rroxscaffold_4G00325060 Rroxscaffold_5G00370400 Rroxscaffold_5G00379000 Rroxscaffold_7G00190540
rosa_rugosa	Rorug04G0227900 Rorug04G0228000 Rorug04G0304000 Rorug04G0304100
rosa_samantha	Rh4AG285300 Rh4AG356400 Rh4BG291300 Rh4BG367300 Rh4CG307100 Rh4CG381300 Rh4DG288400 Rh4DG361600 Rh7AG038600 Rh7CG039800 Rh7DG038300
rosa_wichuraiana	Rw4G024740 Rw4G031430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	145
AclI	AACGTT	1 cut(s)	244
AclWI	GGATC	4 cut(s)	29, 92, 189, 203
AfaI	GTAC	1 cut(s)	104
AflIII	ACRYGT	1 cut(s)	287
AgsI	TTSAA	3 cut(s)	224, 296, 421
AjnI	CCWGG	2 cut(s)	202, 405
AjuI	GAANNNNNNNTTGG	4 cut(s)	23, 55, 216, 248
AluBI	AGCT	1 cut(s)	134
AluI	AGCT	1 cut(s)	134
Alw26I	GTCTC	1 cut(s)	149
AlwI	GGATC	4 cut(s)	29, 92, 189, 203
ApeKI	GCWGC	2 cut(s)	170, 402
AsuHPI	GGTGA	3 cut(s)	218, 332, 421
BbvI	GCAGC	2 cut(s)	157, 414
BccI	CCATC	1 cut(s)	68
BciT130I	CCWGG	2 cut(s)	204, 407
BcoDI	GTCTC	1 cut(s)	149
BisI	GCNGC	2 cut(s)	171, 403
BlsI	GCNGC	2 cut(s)	172, 404
Bme1390I	CCNGG	2 cut(s)	204, 407
BmrFI	CCNGG	2 cut(s)	204, 407
BmsI	GCATC	1 cut(s)	157
BsaBI	GATNNNNATC	1 cut(s)	89
BsaWI	WCCGGW	1 cut(s)	81
Bse1I	ACTGG	2 cut(s)	163, 395
Bse8I	GATNNNNATC	1 cut(s)	89
BseBI	CCWGG	2 cut(s)	204, 407
BseGI	GGATG	2 cut(s)	90, 172
BseJI	GATNNNNATC	1 cut(s)	89
BseNI	ACTGG	2 cut(s)	163, 395
BseXI	GCAGC	2 cut(s)	157, 414
BsiSI	CCGG	1 cut(s)	82
BsmAI	GTCTC	1 cut(s)	149
BsmI	GAATGC	2 cut(s)	61, 284
Bsp1407I	TGTACA	1 cut(s)	102
Bsp143I	GATC	5 cut(s)	34, 84, 194, 208, 424
BspPI	GGATC	4 cut(s)	29, 92, 189, 203
BsrGI	TGTACA	1 cut(s)	102
BsrI	ACTGG	2 cut(s)	163, 395
BssMI	GATC	5 cut(s)	34, 84, 194, 208, 424
BssNAI	GTATAC	1 cut(s)	146
Bst1107I	GTATAC	1 cut(s)	146
Bst2UI	CCWGG	2 cut(s)	204, 407
Bst6I	CTCTTC	1 cut(s)	264
BstAUI	TGTACA	1 cut(s)	102
BstEII	GGTNACC	1 cut(s)	77
BstF5I	GGATG	2 cut(s)	90, 172
BstKTI	GATC	5 cut(s)	37, 87, 197, 211, 427
BstMAI	GTCTC	1 cut(s)	149
BstMBI	GATC	5 cut(s)	34, 84, 194, 208, 424
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 176
BstNI	CCWGG	2 cut(s)	204, 407
BstNSI	RCATGY	1 cut(s)	291
BstPI	GGTNACC	1 cut(s)	77
BstSCI	CCNGG	2 cut(s)	202, 405
BstV1I	GCAGC	2 cut(s)	157, 414
BstZ17I	GTATAC	1 cut(s)	146
BtsCI	GGATG	2 cut(s)	90, 172
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	1 cut(s)	174
CseI	GACGC	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	103
CspCI	CAANNNNNGTGG	2 cut(s)	338, 373
CviAII	CATG	1 cut(s)	288
CviJI	RGCY	2 cut(s)	134, 405
CviKI_1	RGCY	2 cut(s)	134, 405
CviQI	GTAC	1 cut(s)	103
DpnI	GATC	5 cut(s)	36, 86, 196, 210, 426
DpnII	GATC	5 cut(s)	34, 84, 194, 208, 424
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Eco91I	GGTNACC	1 cut(s)	77
EcoO65I	GGTNACC	1 cut(s)	77
EcoRII	CCWGG	2 cut(s)	202, 405
FaeI	CATG	1 cut(s)	291
FaiI	YATR	6 cut(s)	146, 289, 303, 362, 364, 366
FatI	CATG	1 cut(s)	287
FblI	GTMKAC	1 cut(s)	145
Fnu4HI	GCNGC	2 cut(s)	171, 403
FokI	GGATG	2 cut(s)	77, 179
Fsp4HI	GCNGC	2 cut(s)	171, 403
GluI	GCNGC	2 cut(s)	171, 403
HapII	CCGG	1 cut(s)	82
HgaI	GACGC	1 cut(s)	105
Hin1II	CATG	1 cut(s)	291
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HpaI	GTTAAC	1 cut(s)	124
HpaII	CCGG	1 cut(s)	82
HphI	GGTGA	3 cut(s)	218, 332, 421
Hpy166II	GTNNAC	3 cut(s)	31, 124, 146
Hpy188I	TCNGA	2 cut(s)	194, 431
Hpy188III	TCNNGA	1 cut(s)	293
Hpy8I	GTNNAC	3 cut(s)	31, 124, 146
Hpy99I	CGWCG	1 cut(s)	265
HpyAV	CCTTC	2 cut(s)	209, 267
HpyCH4IV	ACGT	1 cut(s)	244
HpyCH4V	TGCA	1 cut(s)	402
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 176
HpySE526I	ACGT	1 cut(s)	244
Hsp92II	CATG	1 cut(s)	291
KspAI	GTTAAC	1 cut(s)	124
Kzo9I	GATC	5 cut(s)	34, 84, 194, 208, 424
LpnPI	CCDG	9 cut(s)	95, 144, 148, 189, 216, 321, 392, 408, 419
Lsp1109I	GCAGC	2 cut(s)	157, 414
LweI	GCATC	1 cut(s)	157
MaeII	ACGT	1 cut(s)	244
MaeIII	GTNAC	3 cut(s)	77, 245, 338
MalI	GATC	5 cut(s)	36, 86, 196, 210, 426
MboI	GATC	5 cut(s)	34, 84, 194, 208, 424
MboII	GAAGA	3 cut(s)	281, 287, 308
MluCI	AATT	1 cut(s)	97
MmeI	TCCRAC	1 cut(s)	354
MnlI	CCTC	3 cut(s)	121, 230, 265
MseI	TTAA	1 cut(s)	123
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	2 cut(s)	204, 407
Mva1269I	GAATGC	2 cut(s)	61, 284
MvaI	CCWGG	2 cut(s)	204, 407
MwoI	GCNNNNNNNGC	2 cut(s)	65, 176
NdeII	GATC	5 cut(s)	34, 84, 194, 208, 424
NlaIII	CATG	1 cut(s)	291
NmuCI	GTSAC	1 cut(s)	338
NspI	RCATGY	1 cut(s)	291
PciI	ACATGT	1 cut(s)	287
PctI	GAATGC	2 cut(s)	61, 284
PkrI	GCNGC	2 cut(s)	172, 404
PscI	ACATGT	1 cut(s)	287
Psp1406I	AACGTT	1 cut(s)	244
Psp6I	CCWGG	2 cut(s)	202, 405
PspEI	GGTNACC	1 cut(s)	77
PspGI	CCWGG	2 cut(s)	202, 405
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	2 cut(s)	171, 403
Sau3AI	GATC	5 cut(s)	34, 84, 194, 208, 424
ScrFI	CCNGG	2 cut(s)	204, 407
SetI	ASST	7 cut(s)	132, 136, 247, 252, 310, 354, 411
SfaNI	GCATC	1 cut(s)	157
Sse9I	AATT	1 cut(s)	97
StyD4I	CCNGG	2 cut(s)	202, 405
TaiI	ACGT	1 cut(s)	247
TaqI	TCGA	1 cut(s)	263
TasI	AATT	1 cut(s)	97
TatI	WGTACW	1 cut(s)	102
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	1 cut(s)	181
TseFI	GTSAC	1 cut(s)	338
TseI	GCWGC	2 cut(s)	170, 402
Tsp45I	GTSAC	1 cut(s)	338
TspDTI	ATGAA	1 cut(s)	381
TspGWI	ACGGA	1 cut(s)	109
TspRI	CASTG	1 cut(s)	181
XceI	RCATGY	1 cut(s)	291
XmiI	GTMKAC	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.