Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002004

Physical Location & Seq

Genomic Coordinates Reverse (-)

7901868 .. 7902676

Gene Structure 809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g11490.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGATACTCAGCTCTCAGTTTCCAGGCCAACCCCCTTCGATGCTCGATCAGAGATACTCGCATTTGCAGCGTGATGGCTTGGTCTCAAGGCGTGAGAAGTCAATGACTCATTTGCAAGAAGATACACAACAACTGAGAAGGGGCAGTTCTGGCACCGAATCCCTGGGTTTTGGGAAGAAATGGAATGGAGATGATACGGAAGAAGATTGTACGTTTGGCCAATCTGAGACCTCGGAAAAGGCTTTGGCAACAAAACTCGCATATGGACTAACTTACGTGCAACCGTCTTCTGAAGATGAAGATGTCTGCCCTACATGTCTGGATGAATACACTTCAGAAAATCCAAAAATCATAACGAGATGTTCTCATCATTTTCACCTTGGCTGTATTTATGAATGGTTGGAAAGAAGCGAAAGCTGTCCAATTTGTGGCAAGGAGATGGAGTTCTGTGAAAGCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

154

Amino Acids

17.37

Weight (kDa)

4.83

Isoelectric Point (pI)

68.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69085
fragaria_vesca	FvH4_4g22510 FvH4_4g22510 FvH4_4g22510 FvH4_4g22510 FvH4_4g29590
malus_domestica	MD13G1059100.v1.1 MD13G1131900.v1.1 MD16G1142200.v1.1
prunus_persica	Prupe.1G213500_v2.0.a1 Prupe.1G213500_v2.0.a1 Prupe.1G290700_v2.0.a1
pyrus_communis	pycom13g05270 pycom13g11490 pycom16g11270
rosa_chinensis	RchiOBHm_Chr4g0428741 RchiOBHm_Chr4g0437831
rosa_laevigata	RLG00000006409 RLG00000007130
rosa_multiflora	Rmu_sc0004193.1_g000009 Rmu_sc0010032.1_g000003
rosa_roxburghii	Rroxscaffold_1G00025140 Rroxscaffold_2G00125470 Rroxscaffold_4G00303240 Rroxscaffold_4G00325060 Rroxscaffold_5G00370400 Rroxscaffold_5G00379000 Rroxscaffold_7G00190540
rosa_rugosa	Rorug04G0227900 Rorug04G0228000 Rorug04G0304000 Rorug04G0304100
rosa_samantha	Rh4AG285300 Rh4AG356400 Rh4BG291300 Rh4BG367300 Rh4CG307100 Rh4CG381300 Rh4DG288400 Rh4DG361600 Rh7AG038600 Rh7CG039800 Rh7DG038300
rosa_wichuraiana	Rw4G024740 Rw4G031430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	152
AccB7I	CCANNNNNTGG	1 cut(s)	428
AcoI	YGGCCR	1 cut(s)	217
AcuI	CTGAAG	2 cut(s)	312, 318
AfaI	GTAC	1 cut(s)	211
AfiI	CCNNNNNNNGG	1 cut(s)	428
AflIII	ACRYGT	1 cut(s)	314
AjnI	CCWGG	2 cut(s)	22, 162
AloI	GAACNNNNNNTCC	2 cut(s)	428, 460
AluBI	AGCT	2 cut(s)	12, 417
AluI	AGCT	2 cut(s)	12, 417
Alw26I	GTCTC	2 cut(s)	88, 221
AoxI	GGCC	2 cut(s)	25, 217
ApeKI	GCWGC	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	368
BalI	TGGCCA	1 cut(s)	219
BanI	GGYRCC	1 cut(s)	152
BbsI	GAAGAC	1 cut(s)	279
BbvI	GCAGC	1 cut(s)	79
BccI	CCATC	2 cut(s)	68, 433
BciT130I	CCWGG	2 cut(s)	24, 164
BcoDI	GTCTC	2 cut(s)	88, 221
BisI	GCNGC	1 cut(s)	68
BlsI	GCNGC	1 cut(s)	69
Bme1390I	CCNGG	2 cut(s)	24, 164
BmiI	GGNNCC	1 cut(s)	154
BmrFI	CCNGG	2 cut(s)	24, 164
BmsI	GCATC	1 cut(s)	30
BpiI	GAAGAC	1 cut(s)	279
BplI	GAGNNNNNCTC	2 cut(s)	349, 381
BpuEI	CTTGAG	1 cut(s)	70
BsaAI	YACGTR	1 cut(s)	277
BsaI	GGTCTC	2 cut(s)	88, 221
BsaJI	CCNNGG	4 cut(s)	162, 163, 231, 379
BsaXI	ACNNNNNCTCC	2 cut(s)	428, 458
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
BseBI	CCWGG	2 cut(s)	24, 164
BseDI	CCNNGG	4 cut(s)	162, 163, 231, 379
BseGI	GGATG	1 cut(s)	328
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseMII	CTCAG	4 cut(s)	22, 29, 125, 216
BseXI	GCAGC	1 cut(s)	79
BshFI	GGCC	2 cut(s)	27, 219
BshNI	GGYRCC	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	428
BsmAI	GTCTC	2 cut(s)	88, 221
BsnI	GGCC	2 cut(s)	27, 219
Bso31I	GGTCTC	2 cut(s)	88, 221
Bsp143I	GATC	1 cut(s)	46
BspANI	GGCC	2 cut(s)	27, 219
BspCNI	CTCAG	4 cut(s)	21, 28, 126, 217
BspLI	GGNNCC	1 cut(s)	154
BspT107I	GGYRCC	1 cut(s)	152
BspTNI	GGTCTC	2 cut(s)	88, 221
BssECI	CCNNGG	4 cut(s)	162, 163, 231, 379
BssMI	GATC	1 cut(s)	46
BssT1I	CCWWGG	1 cut(s)	379
Bst2UI	CCWGG	2 cut(s)	24, 164
Bst4CI	ACNGT	1 cut(s)	285
BstBAI	YACGTR	1 cut(s)	277
BstDEI	CTNAG	4 cut(s)	8, 15, 134, 225
BstF5I	GGATG	1 cut(s)	328
BstKTI	GATC	1 cut(s)	49
BstMAI	GTCTC	2 cut(s)	88, 221
BstMBI	GATC	1 cut(s)	46
BstMWI	GCNNNNNNNGC	2 cut(s)	67, 150
BstNI	CCWGG	2 cut(s)	24, 164
BstNSI	RCATGY	1 cut(s)	318
BstSCI	CCNGG	2 cut(s)	22, 162
BstV1I	GCAGC	1 cut(s)	79
BstV2I	GAAGAC	1 cut(s)	279
BsuRI	GGCC	2 cut(s)	27, 219
BtsCI	GGATG	1 cut(s)	328
Csp6I	GTAC	1 cut(s)	210
CviAII	CATG	1 cut(s)	315
CviJI	RGCY	8 cut(s)	12, 27, 78, 219, 242, 384, 417, 456
CviKI_1	RGCY	8 cut(s)	12, 27, 78, 219, 242, 384, 417, 456
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	4 cut(s)	8, 15, 134, 225
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
EaeI	YGGCCR	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	379
Eco31I	GGTCTC	2 cut(s)	88, 221
Eco57I	CTGAAG	2 cut(s)	312, 318
EcoRII	CCWGG	2 cut(s)	22, 162
EcoT14I	CCWWGG	1 cut(s)	379
ErhI	CCWWGG	1 cut(s)	379
FaeI	CATG	1 cut(s)	318
FaiI	YATR	5 cut(s)	262, 264, 316, 353, 393
FatI	CATG	1 cut(s)	314
FauNDI	CATATG	1 cut(s)	262
Fnu4HI	GCNGC	1 cut(s)	68
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	1 cut(s)	68
GluI	GCNGC	1 cut(s)	68
HaeIII	GGCC	2 cut(s)	27, 219
Hin1II	CATG	1 cut(s)	318
HinfI	GANTC	2 cut(s)	106, 158
HphI	GGTGA	1 cut(s)	368
Hpy188I	TCNGA	5 cut(s)	51, 226, 235, 292, 337
Hpy188III	TCNNGA	1 cut(s)	320
HpyAV	CCTTC	2 cut(s)	45, 132
HpyCH4III	ACNGT	1 cut(s)	285
HpyCH4IV	ACGT	2 cut(s)	212, 276
HpyCH4V	TGCA	3 cut(s)	67, 115, 280
HpyF10VI	GCNNNNNNNGC	2 cut(s)	67, 150
HpyF3I	CTNAG	4 cut(s)	8, 15, 134, 225
HpySE526I	ACGT	2 cut(s)	212, 276
Hsp92II	CATG	1 cut(s)	318
Kzo9I	GATC	1 cut(s)	46
LpnPI	CCDG	6 cut(s)	9, 36, 135, 149, 176, 305
Lsp1109I	GCAGC	1 cut(s)	79
LweI	GCATC	1 cut(s)	30
MaeII	ACGT	2 cut(s)	212, 276
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MboII	GAAGA	7 cut(s)	131, 187, 212, 215, 279, 305, 311
MlsI	TGGCCA	1 cut(s)	219
MluCI	AATT	1 cut(s)	423
MluNI	TGGCCA	1 cut(s)	219
MlyI	GAGTC	1 cut(s)	100
MmeI	TCCRAC	1 cut(s)	381
MnlI	CCTC	1 cut(s)	241
Mox20I	TGGCCA	1 cut(s)	219
MscI	TGGCCA	1 cut(s)	219
MseI	TTAA	1 cut(s)	460
Msp20I	TGGCCA	1 cut(s)	219
MspR9I	CCNGG	2 cut(s)	24, 164
MvaI	CCWGG	2 cut(s)	24, 164
MwoI	GCNNNNNNNGC	2 cut(s)	67, 150
NdeI	CATATG	1 cut(s)	262
NdeII	GATC	1 cut(s)	46
NlaIII	CATG	1 cut(s)	318
NlaIV	GGNNCC	1 cut(s)	154
NspI	RCATGY	1 cut(s)	318
PasI	CCCWGGG	1 cut(s)	163
PciI	ACATGT	1 cut(s)	314
PfeI	GAWTC	1 cut(s)	158
PflMI	CCANNNNNTGG	1 cut(s)	428
PkrI	GCNGC	1 cut(s)	69
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
Ppu21I	YACGTR	1 cut(s)	277
PscI	ACATGT	1 cut(s)	314
Psp6I	CCWGG	2 cut(s)	22, 162
PspGI	CCWGG	2 cut(s)	22, 162
PspN4I	GGNNCC	1 cut(s)	154
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
SaqAI	TTAA	1 cut(s)	460
SatI	GCNGC	1 cut(s)	68
Sau3AI	GATC	1 cut(s)	46
SchI	GAGTC	1 cut(s)	100
ScrFI	CCNGG	2 cut(s)	24, 164
SetI	ASST	6 cut(s)	14, 215, 233, 279, 381, 419
SfaNI	GCATC	1 cut(s)	30
SmlI	CTYRAG	1 cut(s)	85
SmoI	CTYRAG	1 cut(s)	85
Sse9I	AATT	1 cut(s)	423
StyD4I	CCNGG	2 cut(s)	22, 162
StyI	CCWWGG	1 cut(s)	379
TaaI	ACNGT	1 cut(s)	285
TaiI	ACGT	2 cut(s)	215, 279
TaqI	TCGA	2 cut(s)	38, 45
TasI	AATT	1 cut(s)	423
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	1 cut(s)	460
Tru9I	TTAA	1 cut(s)	460
TseI	GCWGC	1 cut(s)	67
TspDTI	ATGAA	3 cut(s)	312, 339, 408
TspGWI	ACGGA	1 cut(s)	212
Van91I	CCANNNNNTGG	1 cut(s)	428
XceI	RCATGY	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.