MD13G1131900.v1.1

Anaphase-promoting complex subunit 11 RING-H2 finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0002004
Physical Location & Seq
Reverse (-)
10006666 .. 10009208
2543 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1131900.v1.1.491

Sequence Viewer

Length: 660 bp
ATGCCTGAGATACTTCTTCCACCAGCTATTCACTGGGGTAGGTATAAAAGCCATGATCAGCTCAATACTTTTTGTCAGTCCCTCCATTCGTATAATGCGCCATTTCAAAGGCTTGATGGACGAGCACCTTCATTACCTATTCAAGGGGCTACTTTGGCATCATCCGGAGTAGGCACAACACTACAGAATAATCCCTTGAATGATACTCAGCTCTCAGTTTCCAGGCCAACCCCCTTCGATGCTGATCAGAGATACTCGCGTTTGCAGCGTGATGGCTTGGTCTCAAGGCGCGAGAAGTCAATGACTCATTTGCAAGAAGATGCACAACAACTGAGAAGGGGCAGTTCTGGCACCGAATCCCTGGGCTTTGGGAAGAAATGGAATGGAGATGATACAGAAGAAGATTGTACGTTTGGCCAATCTGAGACCTTGGAAAAGGCTTCGGCAACAAAACTCGCATATGGACTAACTTATGTGCAACCATCTTCTGAAGATGAAGATGTCTGCCCTACATGTCTGGATGAATACACTTCAGAAAATCCAAAAATCATAACGAGATGTTCCCATCATTTTCACCTTGGCTGTATTTATGAATGGTTGGAAAGAAGCGAAAGCTGTCCAATTTGTGGCAAGGAGATGGAGTTCTGTGAAAGCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2 zf-rbx1

Protein Analysis

220

Amino Acids

24.58

Weight (kDa)

5.16

Isoelectric Point (pI)

61.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 166 - 209 3e-11 RING-H2 zinc finger domain
zf-RING_2 PF13639 168 - 209 3.3e-12 Ring finger domain
zf-ANAPC11 PF12861 168 - 215 3.8e-07 Anaphase-promoting complex subunit 11 RING-H2 finger
zf-C3HC4_2 PF13923 169 - 209 1.4e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_5 PF14634 169 - 211 1.4e-06 zinc-RING finger domain
zf-C3HC4 PF00097 169 - 209 1.5e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 169 - 207 1.3e-06 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 350
AccB7I CCANNNNNTGG 1 cut(s) 626
AccII CGCG 2 cut(s) 259, 291
AccIII TCCGGA 1 cut(s) 164
AcoI YGGCCR 1 cut(s) 415
AcuI CTGAAG 2 cut(s) 510, 516
AfaI GTAC 1 cut(s) 409
AfiI CCNNNNNNNGG 2 cut(s) 143, 626
AflIII ACRYGT 1 cut(s) 512
AgsI TTSAA 3 cut(s) 107, 143, 199
AjnI CCWGG 2 cut(s) 221, 360
AloI GAACNNNNNNTCC 2 cut(s) 626, 658
AluBI AGCT 4 cut(s) 26, 61, 211, 615
AluI AGCT 4 cut(s) 26, 61, 211, 615
Alw21I GWGCWC 1 cut(s) 127
Alw26I GTCTC 2 cut(s) 286, 419
Aor13HI TCCGGA 1 cut(s) 164
AoxI GGCC 2 cut(s) 224, 415
ApeKI GCWGC 1 cut(s) 265
AspLEI GCGC 2 cut(s) 100, 291
AsuHPI GGTGA 1 cut(s) 566
BaeI ACNNNNGTAYC 2 cut(s) 244, 277
BalI TGGCCA 1 cut(s) 417
BanI GGYRCC 1 cut(s) 350
Bbv12I GWGCWC 1 cut(s) 127
BbvI GCAGC 1 cut(s) 277
BccI CCATC 5 cut(s) 110, 266, 490, 573, 631
BciT130I CCWGG 2 cut(s) 223, 362
BclI TGATCA 2 cut(s) 55, 244
BcoDI GTCTC 2 cut(s) 286, 419
BfmI CTRYAG 1 cut(s) 182
BisI GCNGC 1 cut(s) 266
BlsI GCNGC 1 cut(s) 267
Bme1390I CCNGG 2 cut(s) 223, 362
BmiI GGNNCC 1 cut(s) 352
BmrFI CCNGG 2 cut(s) 223, 362
BmrI ACTGGG 1 cut(s) 43
BmsI GCATC 3 cut(s) 167, 229, 310
BmuI ACTGGG 1 cut(s) 43
BpuEI CTTGAG 1 cut(s) 268
BsaBI GATNNNNATC 1 cut(s) 243
BsaI GGTCTC 2 cut(s) 286, 419
BsaJI CCNNGG 4 cut(s) 360, 361, 429, 577
BsaWI WCCGGW 1 cut(s) 164
BsaXI ACNNNNNCTCC 2 cut(s) 626, 656
Bsc4I CCNNNNNNNGG 2 cut(s) 143, 626
Bse1I ACTGG 1 cut(s) 38
Bse8I GATNNNNATC 1 cut(s) 243
BseAI TCCGGA 1 cut(s) 164
BseBI CCWGG 2 cut(s) 223, 362
BseDI CCNNGG 4 cut(s) 360, 361, 429, 577
BseGI GGATG 2 cut(s) 161, 526
BseJI GATNNNNATC 1 cut(s) 243
BseLI CCNNNNNNNGG 2 cut(s) 143, 626
BseMII CTCAG 4 cut(s) 221, 228, 323, 414
BseNI ACTGG 1 cut(s) 38
BseXI GCAGC 1 cut(s) 277
Bsh1236I CGCG 2 cut(s) 259, 291
BshFI GGCC 2 cut(s) 226, 417
BshNI GGYRCC 1 cut(s) 350
BsiHKAI GWGCWC 1 cut(s) 127
BsiSI CCGG 1 cut(s) 165
BslFI GGGAC 1 cut(s) 64
BslI CCNNNNNNNGG 2 cut(s) 143, 626
BsmAI GTCTC 2 cut(s) 286, 419
BsmFI GGGAC 1 cut(s) 64
BsnI GGCC 2 cut(s) 226, 417
Bso31I GGTCTC 2 cut(s) 286, 419
Bsp1286I GDGCHC 1 cut(s) 127
Bsp13I TCCGGA 1 cut(s) 164
Bsp143I GATC 2 cut(s) 55, 244
BspANI GGCC 2 cut(s) 226, 417
BspCNI CTCAG 4 cut(s) 220, 227, 324, 415
BspEI TCCGGA 1 cut(s) 164
BspFNI CGCG 2 cut(s) 259, 291
BspLI GGNNCC 1 cut(s) 352
BspT107I GGYRCC 1 cut(s) 350
BspTNI GGTCTC 2 cut(s) 286, 419
BsrI ACTGG 1 cut(s) 38
BssECI CCNNGG 4 cut(s) 360, 361, 429, 577
BssMI GATC 2 cut(s) 55, 244
BssT1I CCWWGG 2 cut(s) 429, 577
Bst2UI CCWGG 2 cut(s) 223, 362
BstDEI CTNAG 5 cut(s) 6, 207, 214, 332, 423
BstENI CCTNNNNNAGG 1 cut(s) 141
BstF5I GGATG 2 cut(s) 161, 526
BstFNI CGCG 2 cut(s) 259, 291
BstHHI GCGC 2 cut(s) 100, 291
BstKTI GATC 2 cut(s) 58, 247
BstMAI GTCTC 2 cut(s) 286, 419
BstMBI GATC 2 cut(s) 55, 244
BstMWI GCNNNNNNNGC 3 cut(s) 155, 265, 348
BstNI CCWGG 2 cut(s) 223, 362
BstNSI RCATGY 1 cut(s) 516
BstSCI CCNGG 2 cut(s) 221, 360
BstSFI CTRYAG 1 cut(s) 182
BstUI CGCG 2 cut(s) 259, 291
BstV1I GCAGC 1 cut(s) 277
BsuRI GGCC 2 cut(s) 226, 417
BtsCI GGATG 2 cut(s) 161, 526
BtsIMutI CAGTG 1 cut(s) 31
CfoI GCGC 2 cut(s) 100, 291
Csp6I GTAC 1 cut(s) 408
CviAII CATG 2 cut(s) 53, 513
CviQI GTAC 1 cut(s) 408
DdeI CTNAG 5 cut(s) 6, 207, 214, 332, 423
DpnI GATC 2 cut(s) 57, 246
DpnII GATC 2 cut(s) 55, 244
EaeI YGGCCR 1 cut(s) 415
Eco130I CCWWGG 2 cut(s) 429, 577
Eco31I GGTCTC 2 cut(s) 286, 419
Eco57I CTGAAG 2 cut(s) 510, 516
EcoNI CCTNNNNNAGG 1 cut(s) 141
EcoRII CCWGG 2 cut(s) 221, 360
EcoT14I CCWWGG 2 cut(s) 429, 577
ErhI CCWWGG 2 cut(s) 429, 577
FaeI CATG 2 cut(s) 56, 516
FaiI YATR 9 cut(s) 45, 54, 93, 460, 462, 474, 514, 551, 591
FaqI GGGAC 1 cut(s) 64
FatI CATG 2 cut(s) 52, 512
FauNDI CATATG 1 cut(s) 460
FbaI TGATCA 2 cut(s) 55, 244
Fnu4HI GCNGC 1 cut(s) 266
FokI GGATG 2 cut(s) 148, 533
Fsp4HI GCNGC 1 cut(s) 266
GlaI GCGC 2 cut(s) 99, 290
GluI GCNGC 1 cut(s) 266
HaeIII GGCC 2 cut(s) 226, 417
HapII CCGG 1 cut(s) 165
HhaI GCGC 2 cut(s) 100, 291
Hin1II CATG 2 cut(s) 56, 516
Hin6I GCGC 2 cut(s) 98, 289
HinP1I GCGC 2 cut(s) 98, 289
HinfI GANTC 2 cut(s) 304, 356
HpaII CCGG 1 cut(s) 165
HphI GGTGA 1 cut(s) 566
Hpy188I TCNGA 4 cut(s) 249, 424, 490, 535
Hpy188III TCNNGA 2 cut(s) 165, 518
HpyAV CCTTC 3 cut(s) 138, 244, 330
HpyCH4IV ACGT 1 cut(s) 410
HpyCH4V TGCA 4 cut(s) 265, 313, 323, 478
HpyF10VI GCNNNNNNNGC 3 cut(s) 155, 265, 348
HpyF3I CTNAG 5 cut(s) 6, 207, 214, 332, 423
HpySE526I ACGT 1 cut(s) 410
Hsp92II CATG 2 cut(s) 56, 516
HspAI GCGC 2 cut(s) 98, 289
Kpn2I TCCGGA 1 cut(s) 164
Ksp22I TGATCA 2 cut(s) 55, 244
Kzo9I GATC 2 cut(s) 55, 244
Lsp1109I GCAGC 1 cut(s) 277
LweI GCATC 3 cut(s) 167, 229, 310
MaeII ACGT 1 cut(s) 410
MalI GATC 2 cut(s) 57, 246
MboI GATC 2 cut(s) 55, 244
MboII GAAGA 8 cut(s) 8, 329, 385, 410, 413, 477, 503, 509
MhlI GDGCHC 1 cut(s) 127
MlsI TGGCCA 1 cut(s) 417
MluCI AATT 1 cut(s) 621
MluNI TGGCCA 1 cut(s) 417
MlyI GAGTC 1 cut(s) 298
MmeI TCCRAC 1 cut(s) 579
MnlI CCTC 1 cut(s) 92
Mox20I TGGCCA 1 cut(s) 417
MroI TCCGGA 1 cut(s) 164
MscI TGGCCA 1 cut(s) 417
MseI TTAA 1 cut(s) 658
Msp20I TGGCCA 1 cut(s) 417
MspI CCGG 1 cut(s) 165
MspR9I CCNGG 2 cut(s) 223, 362
MvaI CCWGG 2 cut(s) 223, 362
MvnI CGCG 2 cut(s) 259, 291
MwoI GCNNNNNNNGC 3 cut(s) 155, 265, 348
NdeI CATATG 1 cut(s) 460
NdeII GATC 2 cut(s) 55, 244
NlaIII CATG 2 cut(s) 56, 516
NlaIV GGNNCC 1 cut(s) 352
NspI RCATGY 1 cut(s) 516
PasI CCCWGGG 1 cut(s) 361
PciI ACATGT 1 cut(s) 512
PfeI GAWTC 1 cut(s) 356
PflMI CCANNNNNTGG 1 cut(s) 626
PkrI GCNGC 1 cut(s) 267
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
PscI ACATGT 1 cut(s) 512
Psp6I CCWGG 2 cut(s) 221, 360
PspGI CCWGG 2 cut(s) 221, 360
PspN4I GGNNCC 1 cut(s) 352
RsaI GTAC 1 cut(s) 409
RsaNI GTAC 1 cut(s) 408
SaqAI TTAA 1 cut(s) 658
SatI GCNGC 1 cut(s) 266
Sau3AI GATC 2 cut(s) 55, 244
SchI GAGTC 1 cut(s) 298
ScrFI CCNGG 2 cut(s) 223, 362
SduI GDGCHC 1 cut(s) 127
SfaNI GCATC 3 cut(s) 167, 229, 310
SfcI CTRYAG 1 cut(s) 182
SmlI CTYRAG 1 cut(s) 283
SmoI CTYRAG 1 cut(s) 283
Sse9I AATT 1 cut(s) 621
StyD4I CCNGG 2 cut(s) 221, 360
StyI CCWWGG 2 cut(s) 429, 577
TaiI ACGT 1 cut(s) 413
TaqI TCGA 1 cut(s) 237
TasI AATT 1 cut(s) 621
TfiI GAWTC 1 cut(s) 356
Tru1I TTAA 1 cut(s) 658
Tru9I TTAA 1 cut(s) 658
TscAI CASTG 1 cut(s) 38
TseI GCWGC 1 cut(s) 265
TspDTI ATGAA 4 cut(s) 120, 510, 537, 606
TspRI CASTG 1 cut(s) 38
Van91I CCANNNNNTGG 1 cut(s) 626
XagI CCTNNNNNAGG 1 cut(s) 141
XceI RCATGY 1 cut(s) 516
XcmI CCANNNNNNNNNTGG 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.