Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002004

Physical Location & Seq

Genomic Coordinates Forward (+)

59518993 .. 59520611

Gene Structure 1619 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00379000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 168 bp

ATGGAAGAGGAAGAATGCCCTACATGTCTTGAAGAATACACACCGGAAAATCCAAAGATAACAGCAAAGTGTTCTCACCATTTCCACCTTGCTTGTATATATGAATGGTTGGAGAGAAACCAAACATGTCCAGTTTGCAGCCAGGTGATGTCATTTAATGATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

55

Amino Acids

6.48

Weight (kDa)

4.58

Isoelectric Point (pI)

70.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	3 - 46	6.4e-13	RING-H2 zinc finger domain
zf-RING_2	PF13639	5 - 46	6.8e-14	Ring finger domain
zf-C3HC4_2	PF13923	5 - 46	1e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	5 - 33	2.1e-08	RING-like zinc finger
zf-RING_5	PF14634	5 - 48	1.1e-06	zinc-RING finger domain
zf-ANAPC11	PF12861	6 - 53	1.8e-09	Anaphase-promoting complex subunit 11 RING-H2 finger
zf-C3HC4	PF00097	6 - 46	6.6e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	6 - 44	5.2e-09	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69085
fragaria_vesca	FvH4_4g22510 FvH4_4g22510 FvH4_4g22510 FvH4_4g22510 FvH4_4g29590
malus_domestica	MD13G1059100.v1.1 MD13G1131900.v1.1 MD16G1142200.v1.1
prunus_persica	Prupe.1G213500_v2.0.a1 Prupe.1G213500_v2.0.a1 Prupe.1G290700_v2.0.a1
pyrus_communis	pycom13g05270 pycom13g11490 pycom16g11270
rosa_chinensis	RchiOBHm_Chr4g0428741 RchiOBHm_Chr4g0437831
rosa_laevigata	RLG00000006409 RLG00000007130
rosa_multiflora	Rmu_sc0004193.1_g000009 Rmu_sc0010032.1_g000003
rosa_roxburghii	Rroxscaffold_1G00025140 Rroxscaffold_2G00125470 Rroxscaffold_4G00303240 Rroxscaffold_4G00325060 Rroxscaffold_5G00370400 Rroxscaffold_5G00379000 Rroxscaffold_7G00190540
rosa_rugosa	Rorug04G0227900 Rorug04G0228000 Rorug04G0304000 Rorug04G0304100
rosa_samantha	Rh4AG285300 Rh4AG356400 Rh4BG291300 Rh4BG367300 Rh4CG307100 Rh4CG381300 Rh4DG288400 Rh4DG361600 Rh7AG038600 Rh7CG039800 Rh7DG038300
rosa_wichuraiana	Rw4G024740 Rw4G031430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AflIII	ACRYGT	2 cut(s)	23, 125
AgsI	TTSAA	1 cut(s)	32
AjnI	CCWGG	1 cut(s)	141
ApeKI	GCWGC	1 cut(s)	138
AsuHPI	GGTGA	2 cut(s)	68, 157
BbvI	GCAGC	1 cut(s)	150
BciT130I	CCWGG	1 cut(s)	143
BisI	GCNGC	1 cut(s)	139
BlsI	GCNGC	1 cut(s)	140
Bme1390I	CCNGG	1 cut(s)	143
BmrFI	CCNGG	1 cut(s)	143
BsaWI	WCCGGW	1 cut(s)	43
Bse1I	ACTGG	1 cut(s)	131
BseBI	CCWGG	1 cut(s)	143
BseNI	ACTGG	1 cut(s)	131
BseXI	GCAGC	1 cut(s)	150
BsiSI	CCGG	1 cut(s)	44
BsmI	GAATGC	1 cut(s)	20
Bsp143I	GATC	1 cut(s)	160
BsrI	ACTGG	1 cut(s)	131
BssMI	GATC	1 cut(s)	160
Bst2UI	CCWGG	1 cut(s)	143
BstKTI	GATC	1 cut(s)	163
BstMBI	GATC	1 cut(s)	160
BstNI	CCWGG	1 cut(s)	143
BstNSI	RCATGY	2 cut(s)	27, 129
BstSCI	CCNGG	1 cut(s)	141
BstV1I	GCAGC	1 cut(s)	150
CspCI	CAANNNNNGTGG	2 cut(s)	74, 109
CviAII	CATG	2 cut(s)	24, 126
CviJI	RGCY	1 cut(s)	141
CviKI_1	RGCY	1 cut(s)	141
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
EcoRII	CCWGG	1 cut(s)	141
FaeI	CATG	2 cut(s)	27, 129
FaiI	YATR	5 cut(s)	25, 98, 100, 102, 127
FatI	CATG	2 cut(s)	23, 125
Fnu4HI	GCNGC	1 cut(s)	139
Fsp4HI	GCNGC	1 cut(s)	139
GluI	GCNGC	1 cut(s)	139
HapII	CCGG	1 cut(s)	44
Hin1II	CATG	2 cut(s)	27, 129
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	2 cut(s)	68, 157
Hpy188I	TCNGA	1 cut(s)	167
Hpy188III	TCNNGA	1 cut(s)	29
HpyCH4V	TGCA	1 cut(s)	138
Hsp92II	CATG	2 cut(s)	27, 129
Kzo9I	GATC	1 cut(s)	160
LpnPI	CCDG	4 cut(s)	57, 128, 144, 155
Lsp1109I	GCAGC	1 cut(s)	150
MalI	GATC	1 cut(s)	162
MboI	GATC	1 cut(s)	160
MboII	GAAGA	3 cut(s)	17, 23, 44
MmeI	TCCRAC	1 cut(s)	90
MseI	TTAA	1 cut(s)	156
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	1 cut(s)	143
Mva1269I	GAATGC	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	143
NdeII	GATC	1 cut(s)	160
NlaIII	CATG	2 cut(s)	27, 129
NspI	RCATGY	2 cut(s)	27, 129
PciI	ACATGT	2 cut(s)	23, 125
PctI	GAATGC	1 cut(s)	20
PkrI	GCNGC	1 cut(s)	140
PscI	ACATGT	2 cut(s)	23, 125
Psp6I	CCWGG	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	1 cut(s)	139
Sau3AI	GATC	1 cut(s)	160
ScrFI	CCNGG	1 cut(s)	143
SetI	ASST	2 cut(s)	90, 147
SgeI	CNNG	9 cut(s)	36, 41, 56, 101, 105, 138, 143, 154, 155
StyD4I	CCNGG	1 cut(s)	141
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TseI	GCWGC	1 cut(s)	138
TspDTI	ATGAA	1 cut(s)	117
XceI	RCATGY	2 cut(s)	27, 129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.