Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002004

Physical Location & Seq

Genomic Coordinates Reverse (-)

2672185 .. 2676420

Gene Structure 4236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG039800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGCGAAAATTGGGAAGAAATCGATCGGCTCTTAGGGTTAGCTGTTTTGCACAATACATAAATGAGCTGGTCACTGACACTTGTGAAGCCCAGGTCAAGATTAAGCCCAAATATCATATTGGGCCTTCTCTCGAGGAAGTTAGCTCAAGAATCCAAATTTTTACACTGGATTTCCGATTCCTGGGTGCCCCCTATCTTTGTCCACCCACCAAGATCAATCTCTATCTCTCTCTCCATTCCACTAAAGAATATACTCCAGAAAACCTCAAAATAATGACAAAATGCTCTCATCATTATCATCTTGGTTGTATATATGAGTGGATGGAGAGAAGTGAAAGTTGTCCTGTTTGTAGCAAGGGAAATTCCTTTGCCACAACATATGTGAAGGCAGATTCACTTGGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

135

Amino Acids

15.46

Weight (kDa)

8.84

Isoelectric Point (pI)

38.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	87 - 117	7.8e-09	Ring finger domain
zf-rbx1	PF12678	90 - 117	3.5e-09	RING-H2 zinc finger domain
zf-C3HC4_2	PF13923	91 - 117	5.3e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69085
fragaria_vesca	FvH4_4g22510 FvH4_4g22510 FvH4_4g22510 FvH4_4g22510 FvH4_4g29590
malus_domestica	MD13G1059100.v1.1 MD13G1131900.v1.1 MD16G1142200.v1.1
prunus_persica	Prupe.1G213500_v2.0.a1 Prupe.1G213500_v2.0.a1 Prupe.1G290700_v2.0.a1
pyrus_communis	pycom13g05270 pycom13g11490 pycom16g11270
rosa_chinensis	RchiOBHm_Chr4g0428741 RchiOBHm_Chr4g0437831
rosa_laevigata	RLG00000006409 RLG00000007130
rosa_multiflora	Rmu_sc0004193.1_g000009 Rmu_sc0010032.1_g000003
rosa_roxburghii	Rroxscaffold_1G00025140 Rroxscaffold_2G00125470 Rroxscaffold_4G00303240 Rroxscaffold_4G00325060 Rroxscaffold_5G00370400 Rroxscaffold_5G00379000 Rroxscaffold_7G00190540
rosa_rugosa	Rorug04G0227900 Rorug04G0228000 Rorug04G0304000 Rorug04G0304100
rosa_samantha	Rh4AG285300 Rh4AG356400 Rh4BG291300 Rh4BG367300 Rh4CG307100 Rh4CG381300 Rh4DG288400 Rh4DG361600 Rh7AG038600 Rh7CG039800 Rh7DG038300
rosa_wichuraiana	Rw4G024740 Rw4G031430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	185
AcsI	RAATTY	2 cut(s)	156, 361
AfiI	CCNNNNNNNGG	1 cut(s)	181
AjnI	CCWGG	2 cut(s)	90, 180
AluBI	AGCT	3 cut(s)	42, 67, 144
AluI	AGCT	3 cut(s)	42, 67, 144
Ama87I	CYCGRG	1 cut(s)	131
AoxI	GGCC	1 cut(s)	122
ApoI	RAATTY	2 cut(s)	156, 361
AspS9I	GGNCC	1 cut(s)	122
AvaI	CYCGRG	1 cut(s)	131
BaeGI	GKGCMC	1 cut(s)	190
BanI	GGYRCC	1 cut(s)	185
BccI	CCATC	1 cut(s)	316
BciT130I	CCWGG	2 cut(s)	92, 182
Bme1390I	CCNGG	2 cut(s)	92, 182
BmeT110I	CYCGRG	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	122
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	2 cut(s)	92, 182
BpmI	CTGGAG	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	130
Bsa29I	ATCGAT	1 cut(s)	22
BsaJI	CCNNGG	2 cut(s)	90, 181
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse1I	ACTGG	1 cut(s)	171
BseBI	CCWGG	2 cut(s)	92, 182
BseCI	ATCGAT	1 cut(s)	22
BseDI	CCNNGG	2 cut(s)	90, 181
BseGI	GGATG	1 cut(s)	327
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseNI	ACTGG	1 cut(s)	171
BseSI	GKGCMC	1 cut(s)	190
Bsh1285I	CGRYCG	1 cut(s)	26
BshFI	GGCC	1 cut(s)	124
BshNI	GGYRCC	1 cut(s)	185
BshVI	ATCGAT	1 cut(s)	22
BsiEI	CGRYCG	1 cut(s)	26
BsiHKCI	CYCGRG	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	181
BsnI	GGCC	1 cut(s)	124
BsoBI	CYCGRG	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp143I	GATC	2 cut(s)	23, 213
BspANI	GGCC	1 cut(s)	124
BspDI	ATCGAT	1 cut(s)	22
BspLI	GGNNCC	1 cut(s)	187
BspT107I	GGYRCC	1 cut(s)	185
BsrI	ACTGG	1 cut(s)	171
BssECI	CCNNGG	2 cut(s)	90, 181
BssMI	GATC	2 cut(s)	23, 213
Bst2UI	CCWGG	2 cut(s)	92, 182
BstDEI	CTNAG	1 cut(s)	32
BstF5I	GGATG	1 cut(s)	327
BstKTI	GATC	2 cut(s)	26, 216
BstMBI	GATC	2 cut(s)	23, 213
BstMCI	CGRYCG	1 cut(s)	26
BstNI	CCWGG	2 cut(s)	92, 182
BstSCI	CCNGG	2 cut(s)	90, 180
BstSLI	GKGCMC	1 cut(s)	190
Bsu15I	ATCGAT	1 cut(s)	22
BsuRI	GGCC	1 cut(s)	124
BsuTUI	ATCGAT	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	327
BtsIMutI	CAGTG	2 cut(s)	72, 164
Cfr13I	GGNCC	1 cut(s)	122
ClaI	ATCGAT	1 cut(s)	22
CviJI	RGCY	7 cut(s)	29, 42, 67, 89, 106, 124, 144
CviKI_1	RGCY	7 cut(s)	29, 42, 67, 89, 106, 124, 144
DdeI	CTNAG	1 cut(s)	32
DpnI	GATC	2 cut(s)	25, 215
DpnII	GATC	2 cut(s)	23, 213
Eco88I	CYCGRG	1 cut(s)	131
EcoRII	CCWGG	2 cut(s)	90, 180
FaiI	YATR	8 cut(s)	59, 117, 252, 311, 313, 315, 379, 381
FauNDI	CATATG	1 cut(s)	379
FokI	GGATG	1 cut(s)	334
GsuI	CTGGAG	1 cut(s)	240
HaeIII	GGCC	1 cut(s)	124
HinfI	GANTC	3 cut(s)	150, 177, 392
Hpy166II	GTNNAC	1 cut(s)	203
Hpy188I	TCNGA	1 cut(s)	176
Hpy188III	TCNNGA	4 cut(s)	97, 131, 147, 257
Hpy8I	GTNNAC	1 cut(s)	203
HpyAV	CCTTC	2 cut(s)	135, 379
HpyCH4V	TGCA	1 cut(s)	50
HpyF3I	CTNAG	1 cut(s)	32
Kzo9I	GATC	2 cut(s)	23, 213
LpnPI	CCDG	8 cut(s)	53, 77, 104, 152, 167, 194, 270, 357
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	2 cut(s)	25, 215
MboI	GATC	2 cut(s)	23, 213
MboII	GAAGA	1 cut(s)	27
MhlI	GDGCHC	1 cut(s)	190
MluCI	AATT	4 cut(s)	8, 156, 361, 403
MnlI	CCTC	2 cut(s)	127, 275
MseI	TTAA	1 cut(s)	102
MspR9I	CCNGG	2 cut(s)	92, 182
MvaI	CCWGG	2 cut(s)	92, 182
NdeI	CATATG	1 cut(s)	379
NdeII	GATC	2 cut(s)	23, 213
NlaIV	GGNNCC	1 cut(s)	187
NmuCI	GTSAC	1 cut(s)	70
PaeR7I	CTCGAG	1 cut(s)	131
PfeI	GAWTC	3 cut(s)	150, 177, 392
Ple19I	CGATCG	1 cut(s)	26
Psp6I	CCWGG	2 cut(s)	90, 180
PspGI	CCWGG	2 cut(s)	90, 180
PspN4I	GGNNCC	1 cut(s)	187
PspPI	GGNCC	1 cut(s)	122
PvuI	CGATCG	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	102
Sau3AI	GATC	2 cut(s)	23, 213
Sau96I	GGNCC	1 cut(s)	122
ScrFI	CCNGG	2 cut(s)	92, 182
SduI	GDGCHC	1 cut(s)	190
SetI	ASST	5 cut(s)	44, 69, 96, 146, 267
Sfr274I	CTCGAG	1 cut(s)	131
SlaI	CTCGAG	1 cut(s)	131
SmlI	CTYRAG	2 cut(s)	131, 145
SmoI	CTYRAG	2 cut(s)	131, 145
Sse9I	AATT	4 cut(s)	8, 156, 361, 403
StyD4I	CCNGG	2 cut(s)	90, 180
TaqI	TCGA	2 cut(s)	22, 132
TasI	AATT	4 cut(s)	8, 156, 361, 403
TfiI	GAWTC	3 cut(s)	150, 177, 392
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TscAI	CASTG	2 cut(s)	79, 171
TseFI	GTSAC	1 cut(s)	70
Tsp45I	GTSAC	1 cut(s)	70
TspRI	CASTG	2 cut(s)	79, 171
XapI	RAATTY	2 cut(s)	156, 361
XhoI	CTCGAG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.