Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002004

Physical Location & Seq

Genomic Coordinates Forward (+)

4118922 .. 4124897

Gene Structure 5976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1059100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGGTTCGGCTTGTTCTTGCTTCCGGTCAAAAGATCCTATAGAAGATAATAACGGTGACAATGCAAGTAATGGTGATGTTGGCTTCACTCAAAACTTGTACAACAAAATTGAGAAATATAGAGCATCAATCAGCAGTTGGAGAAGAGATAATTTAGTCAATTCATCTAATGAGGTTGCCGACGCATCTTCAATACCCGATGGGGCACCTCAGGTTGCACAATCTGGCACTACTACTGTTGAAGTCCAAGTTGTCCAAGCCCCTCCACAAGAGGGACTAAATGAAGGGTTAATATATCAGAACCCTAATGAGTCCTTAAAGAAGTCATCATCTGGAAAAGAAGCCACAGGGCTTATGTATATCTATGATTTATTAGAACGTGGCGAAGAATGTCCCACATGCCTGGAAGAATACACGACTGAAAATCCAAAGATAACAGTGGAGTGTTCTCACCATTACCACCTTTCTTGTATTTTTGAATGGATGGAGAGAAGCCCAACCTGCCCAATTTGCAGCCGGGTGATGTTATTTAGTGAAACGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

182

Amino Acids

20.02

Weight (kDa)

4.61

Isoelectric Point (pI)

59.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	129 - 171	1.6e-10	RING-H2 zinc finger domain
zf-RING_2	PF13639	130 - 171	5.6e-12	Ring finger domain
zf-C3HC4_2	PF13923	130 - 171	2.3e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	131 - 171	5.9e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	131 - 169	1e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69085
fragaria_vesca	FvH4_4g22510 FvH4_4g22510 FvH4_4g22510 FvH4_4g22510 FvH4_4g29590
malus_domestica	MD13G1059100.v1.1 MD13G1131900.v1.1 MD16G1142200.v1.1
prunus_persica	Prupe.1G213500_v2.0.a1 Prupe.1G213500_v2.0.a1 Prupe.1G290700_v2.0.a1
pyrus_communis	pycom13g05270 pycom13g11490 pycom16g11270
rosa_chinensis	RchiOBHm_Chr4g0428741 RchiOBHm_Chr4g0437831
rosa_laevigata	RLG00000006409 RLG00000007130
rosa_multiflora	Rmu_sc0004193.1_g000009 Rmu_sc0010032.1_g000003
rosa_roxburghii	Rroxscaffold_1G00025140 Rroxscaffold_2G00125470 Rroxscaffold_4G00303240 Rroxscaffold_4G00325060 Rroxscaffold_5G00370400 Rroxscaffold_5G00379000 Rroxscaffold_7G00190540
rosa_rugosa	Rorug04G0227900 Rorug04G0228000 Rorug04G0304000 Rorug04G0304100
rosa_samantha	Rh4AG285300 Rh4AG356400 Rh4BG291300 Rh4BG367300 Rh4CG307100 Rh4CG381300 Rh4DG288400 Rh4DG361600 Rh7AG038600 Rh7CG039800 Rh7DG038300
rosa_wichuraiana	Rw4G024740 Rw4G031430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	509
AccB1I	GGYRCC	1 cut(s)	205
AclWI	GGATC	1 cut(s)	29
AfaI	GTAC	1 cut(s)	101
AfiI	CCNNNNNNNGG	1 cut(s)	272
AgsI	TTSAA	3 cut(s)	192, 242, 479
AjnI	CCWGG	1 cut(s)	402
AlwI	GGATC	1 cut(s)	29
ApeKI	GCWGC	1 cut(s)	513
AsuC2I	CCSGG	1 cut(s)	518
AsuHPI	GGTGA	4 cut(s)	68, 86, 443, 532
AxyI	CCTNAGG	1 cut(s)	210
BaeGI	GKGCMC	1 cut(s)	208
BanI	GGYRCC	1 cut(s)	205
BbvI	GCAGC	1 cut(s)	525
BccI	CCATC	2 cut(s)	194, 478
BciT130I	CCWGG	1 cut(s)	404
BcnI	CCSGG	1 cut(s)	518
BfmI	CTRYAG	1 cut(s)	39
BfuAI	ACCTGC	1 cut(s)	509
BisI	GCNGC	1 cut(s)	514
BlsI	GCNGC	1 cut(s)	515
Bme1390I	CCNGG	2 cut(s)	404, 518
BmiI	GGNNCC	1 cut(s)	207
BmrFI	CCNGG	2 cut(s)	404, 518
BmsI	GCATC	2 cut(s)	134, 194
BpuMI	CCSGG	1 cut(s)	518
BsaWI	WCCGGW	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse21I	CCTNAGG	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	404
BseGI	GGATG	1 cut(s)	489
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMII	CTCAG	1 cut(s)	224
BseSI	GKGCMC	1 cut(s)	208
BseXI	GCAGC	1 cut(s)	525
BshNI	GGYRCC	1 cut(s)	205
BsiSI	CCGG	2 cut(s)	25, 517
BslFI	GGGAC	2 cut(s)	288, 378
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmFI	GGGAC	2 cut(s)	288, 378
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp1407I	TGTACA	1 cut(s)	99
Bsp143I	GATC	1 cut(s)	34
BspCNI	CTCAG	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	207
BspMI	ACCTGC	1 cut(s)	509
BspPI	GGATC	1 cut(s)	29
BspT107I	GGYRCC	1 cut(s)	205
BsrGI	TGTACA	1 cut(s)	99
BssMI	GATC	1 cut(s)	34
Bst2UI	CCWGG	1 cut(s)	404
Bst4CI	ACNGT	3 cut(s)	56, 238, 439
Bst6I	CTCTTC	1 cut(s)	139
BstAUI	TGTACA	1 cut(s)	99
BstDEI	CTNAG	1 cut(s)	210
BstF5I	GGATG	1 cut(s)	489
BstKTI	GATC	1 cut(s)	37
BstMBI	GATC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	2 cut(s)	501, 510
BstNI	CCWGG	1 cut(s)	404
BstNSI	RCATGY	1 cut(s)	402
BstSCI	CCNGG	2 cut(s)	402, 516
BstSFI	CTRYAG	1 cut(s)	39
BstSLI	GKGCMC	1 cut(s)	208
BstV1I	GCAGC	1 cut(s)	525
BstX2I	RGATCY	1 cut(s)	34
BstXI	CCANNNNNNTGG	1 cut(s)	403
BstYI	RGATCY	1 cut(s)	34
Bsu36I	CCTNAGG	1 cut(s)	210
BtsCI	GGATG	1 cut(s)	489
BtsIMutI	CAGTG	1 cut(s)	444
BveI	ACCTGC	1 cut(s)	509
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	100
CspCI	CAANNNNNGTGG	2 cut(s)	449, 484
CviAII	CATG	1 cut(s)	399
CviJI	RGCY	7 cut(s)	11, 84, 260, 344, 352, 495, 516
CviKI_1	RGCY	7 cut(s)	11, 84, 260, 344, 352, 495, 516
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
Eam1104I	CTCTTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	139
Eco81I	CCTNAGG	1 cut(s)	210
EcoRII	CCWGG	1 cut(s)	402
FaeI	CATG	1 cut(s)	402
FaiI	YATR	7 cut(s)	41, 120, 295, 356, 360, 366, 400
FaqI	GGGAC	2 cut(s)	288, 378
FatI	CATG	1 cut(s)	398
Fnu4HI	GCNGC	1 cut(s)	514
FokI	GGATG	1 cut(s)	496
Fsp4HI	GCNGC	1 cut(s)	514
GluI	GCNGC	1 cut(s)	514
HapII	CCGG	2 cut(s)	25, 517
HgaI	GACGC	1 cut(s)	191
Hin1II	CATG	1 cut(s)	402
HinfI	GANTC	1 cut(s)	311
HpaII	CCGG	2 cut(s)	25, 517
HphI	GGTGA	4 cut(s)	68, 86, 443, 532
Hpy188I	TCNGA	1 cut(s)	300
Hpy188III	TCNNGA	2 cut(s)	333, 543
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	1 cut(s)	278
HpyCH4III	ACNGT	3 cut(s)	56, 238, 439
HpyCH4IV	ACGT	2 cut(s)	379, 539
HpyCH4V	TGCA	3 cut(s)	65, 218, 513
HpyF10VI	GCNNNNNNNGC	2 cut(s)	501, 510
HpyF3I	CTNAG	1 cut(s)	210
HpySE526I	ACGT	2 cut(s)	379, 539
Hsp92II	CATG	1 cut(s)	402
Kzo9I	GATC	1 cut(s)	34
LpnPI	CCDG	9 cut(s)	38, 197, 210, 318, 333, 389, 416, 514, 530
Lsp1109I	GCAGC	1 cut(s)	525
LweI	GCATC	2 cut(s)	134, 194
MaeII	ACGT	2 cut(s)	379, 539
MaeIII	GTNAC	1 cut(s)	56
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	5 cut(s)	56, 156, 180, 398, 419
MflI	RGATCY	1 cut(s)	34
MhlI	GDGCHC	1 cut(s)	208
MluCI	AATT	4 cut(s)	108, 151, 160, 507
MlyI	GAGTC	1 cut(s)	320
MmeI	TCCRAC	1 cut(s)	119
MnlI	CCTC	4 cut(s)	166, 219, 265, 273
MseI	TTAA	2 cut(s)	290, 317
MspI	CCGG	2 cut(s)	25, 517
MspR9I	CCNGG	2 cut(s)	404, 518
MvaI	CCWGG	1 cut(s)	404
MwoI	GCNNNNNNNGC	2 cut(s)	501, 510
NciI	CCSGG	1 cut(s)	518
NdeII	GATC	1 cut(s)	34
NlaIII	CATG	1 cut(s)	402
NlaIV	GGNNCC	1 cut(s)	207
NmuCI	GTSAC	1 cut(s)	56
NspI	RCATGY	1 cut(s)	402
PkrI	GCNGC	1 cut(s)	515
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
Psp6I	CCWGG	1 cut(s)	402
PspGI	CCWGG	1 cut(s)	402
PspN4I	GGNNCC	1 cut(s)	207
PsuI	RGATCY	1 cut(s)	34
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
SaqAI	TTAA	2 cut(s)	290, 317
SatI	GCNGC	1 cut(s)	514
Sau3AI	GATC	1 cut(s)	34
SchI	GAGTC	1 cut(s)	320
ScrFI	CCNGG	2 cut(s)	404, 518
SduI	GDGCHC	1 cut(s)	208
SetI	ASST	7 cut(s)	177, 211, 216, 382, 465, 503, 542
SfaNI	GCATC	2 cut(s)	134, 194
SfcI	CTRYAG	1 cut(s)	39
Sse9I	AATT	4 cut(s)	108, 151, 160, 507
StyD4I	CCNGG	2 cut(s)	402, 516
TaaI	ACNGT	3 cut(s)	56, 238, 439
TaiI	ACGT	2 cut(s)	382, 542
TasI	AATT	4 cut(s)	108, 151, 160, 507
TatI	WGTACW	1 cut(s)	99
Tru1I	TTAA	2 cut(s)	290, 317
Tru9I	TTAA	2 cut(s)	290, 317
TscAI	CASTG	1 cut(s)	444
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	1 cut(s)	513
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	2 cut(s)	153, 297
TspRI	CASTG	1 cut(s)	444
XceI	RCATGY	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.