Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000844

Physical Location & Seq

Genomic Coordinates Forward (+)

32097254 .. 32099933

Gene Structure 2680 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g34150.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGGGCTCACGTTCACGAAGCTGTTCAGCCGGCTTTTCGCCAAGAAAGAGATGCGAATTCTGATGGTCGGTCTCGATGCCGCTGGTAAGACCACCATCCTGTACAAGCTCAAGCTCGGTGAGATCGTCACGACGATTCCTACTATCGGATTTAATGTTGAGACCGTGGAATACAAGAACATCAGCTTCACAGTCTGGGATGTCGGGGGTCAGGACAAGATCCGACCTTTGTGGAGGCACTACTTCCAGAACACACAGGGTCTTATCTTTGTTGTGGACAGCAATGACAGAGACCGTGTTGTGGAGGCTAGGGATGAATTGCACAGGATGTTGAATGAGGATGAGCTGCGAGAAGCTGTGTTGCTTGTTTTTGCCAACAAACAGGATCTCCCCAACGCAATGAATGCTGCTGAAATTACTGATAAGCTTGGCCTCCACTCTCTCCGACAGCGTCACTGGTACATCCAGAGCACTTGTGCAACATCTGGAGAGGGTCTATATGAAGGCCTGGATTGGCTCTCCAACAACATTGCTAACAAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006471 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0019538 GO:0033036 GO:0034613 GO:0036211 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko05110 ko05134 map04072 map04144 map05110 map05134

Pfam Domains

Protein Families

Arf

Protein Analysis

182

Amino Acids

20.71

Weight (kDa)

6.43

Isoelectric Point (pI)

33.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	5 - 177	1.3e-81	ADP-ribosylation factor family
SRPRB	PF09439	16 - 143	5.9e-13	Signal recognition particle receptor beta subunit
Roc	PF08477	19 - 129	8.3e-14	Ras of Complex, Roc, domain of DAPkinase
Ras	PF00071	19 - 173	5.8e-12	Ras family
Gtr1_RagA	PF04670	19 - 141	1.6e-09	Gtr1/RagA G protein conserved region
G-alpha	PF00503	44 - 111	6e-10	G-protein alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14670 AT5G14670 AT5G14670
fragaria_vesca	FvH4_1g26580 FvH4_2g05330 FvH4_4g34150 FvH4_6g50940
malus_domestica	MD02G1178300.v1.1 MD05G1087900.v1.1 MD09G1288000.v1.1 MD13G1093800.v1.1 MD16G1095100.v1.1 MD17G1032200.v1.1 MD17G1280300.v1.1
prunus_persica	Prupe.1G251500_v2.0.a1 Prupe.1G251500_v2.0.a1 Prupe.1G251500_v2.0.a1 Prupe.3G005200_v2.0.a1 Prupe.3G005200_v2.0.a1 Prupe.3G005200_v2.0.a1 Prupe.6G229500_v2.0.a1 Prupe.6G229500_v2.0.a1 Prupe.8G134000_v2.0.a1
pyrus_communis	pycom02g14440 pycom05g08740 pycom09g19540 pycom16g08120 pycom17g27820
rosa_chinensis	RchiOBHm_Chr2g0106611 RchiOBHm_Chr2g0172341 RchiOBHm_Chr3g0486681 RchiOBHm_Chr4g0443661 RchiOBHm_Chr6g0255541
rosa_laevigata	RLG00000005904 RLG00000014832 RLG00000017521 RLG00000023067
rosa_multiflora	Rmu_co8483849.1_g000001 Rmu_sc0000261.1_g000013 Rmu_sc0000467.1_g000011 Rmu_sc0001426.1_g000018 Rmu_sc0002360.1_g000004 Rmu_sc0006202.1_g000005 Rmu_sc0006221.1_g000007
rosa_roxburghii	Rroxscaffold_2G00136970 Rroxscaffold_5G00384210 Rroxscaffold_6G00395670 Rroxscaffold_7G00209900
rosa_rugosa	Rorug02G0136700 Rorug02G0136800 Rorug03G0226500 Rorug03G0226600 Rorug03G0226700 Rorug05G0559300
rosa_samantha	Rh2BG198900 Rh2BG647400 Rh2CG614300 Rh2DG194100 Rh2DG662200 Rh4CG431500 Rh6AG077800 Rh6DG065500
rosa_wichuraiana	Rw2G014750 Rw2G052480 Rw3G024590 Rw4G034860 Rw6G006700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	81
AclWI	GGATC	2 cut(s)	214, 393
AcsI	RAATTY	1 cut(s)	57
AfaI	GTAC	2 cut(s)	104, 461
AfiI	CCNNNNNNNGG	2 cut(s)	146, 301
AgsI	TTSAA	1 cut(s)	334
AjnI	CCWGG	1 cut(s)	507
AluBI	AGCT	7 cut(s)	22, 109, 115, 186, 346, 356, 427
AluI	AGCT	7 cut(s)	22, 109, 115, 186, 346, 356, 427
Alw21I	GWGCWC	1 cut(s)	473
Alw26I	GTCTC	3 cut(s)	77, 155, 285
AlwI	GGATC	2 cut(s)	214, 393
AoxI	GGCC	2 cut(s)	430, 505
ApeKI	GCWGC	2 cut(s)	346, 407
ApoI	RAATTY	1 cut(s)	57
Asp700I	GAANNNNTTC	1 cut(s)	23
AsuHPI	GGTGA	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	9
Bbv12I	GWGCWC	1 cut(s)	473
BbvI	GCAGC	2 cut(s)	333, 394
BccI	CCATC	2 cut(s)	58, 104
BciT130I	CCWGG	1 cut(s)	509
BcoDI	GTCTC	3 cut(s)	77, 155, 285
BfaI	CTAG	1 cut(s)	309
BisI	GCNGC	3 cut(s)	81, 347, 408
BlsI	GCNGC	3 cut(s)	82, 348, 409
Bme1390I	CCNGG	1 cut(s)	509
BmrFI	CCNGG	1 cut(s)	509
BmsI	GCATC	2 cut(s)	42, 67
BpmI	CTGGAG	1 cut(s)	507
BpuEI	CTTGAG	1 cut(s)	95
BsaI	GGTCTC	3 cut(s)	77, 155, 285
BsaJI	CCNNGG	1 cut(s)	165
BsaXI	ACNNNNNCTCC	2 cut(s)	372, 402
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 301
Bse118I	RCCGGY	1 cut(s)	30
Bse1I	ACTGG	1 cut(s)	461
Bse3DI	GCAATG	3 cut(s)	289, 405, 528
BseBI	CCWGG	1 cut(s)	509
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	6 cut(s)	96, 205, 319, 333, 346, 462
BseLI	CCNNNNNNNGG	2 cut(s)	146, 301
BseMI	GCAATG	3 cut(s)	289, 405, 528
BseNI	ACTGG	1 cut(s)	461
BseXI	GCAGC	2 cut(s)	333, 394
BshFI	GGCC	2 cut(s)	432, 507
BsiHKAI	GWGCWC	1 cut(s)	473
BsiSI	CCGG	1 cut(s)	31
BslI	CCNNNNNNNGG	2 cut(s)	146, 301
BsmAI	GTCTC	3 cut(s)	77, 155, 285
BsmI	GAATGC	1 cut(s)	409
BsnI	GGCC	2 cut(s)	432, 507
Bso31I	GGTCTC	3 cut(s)	77, 155, 285
Bsp1286I	GDGCHC	2 cut(s)	9, 473
Bsp1407I	TGTACA	1 cut(s)	102
Bsp143I	GATC	3 cut(s)	123, 219, 385
BspACI	CCGC	1 cut(s)	81
BspANI	GGCC	2 cut(s)	432, 507
BspPI	GGATC	2 cut(s)	214, 393
BspTNI	GGTCTC	3 cut(s)	77, 155, 285
BsrDI	GCAATG	3 cut(s)	289, 405, 528
BsrFI	RCCGGY	1 cut(s)	30
BsrGI	TGTACA	1 cut(s)	102
BsrI	ACTGG	1 cut(s)	461
BssAI	RCCGGY	1 cut(s)	30
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	3 cut(s)	123, 219, 385
Bst2UI	CCWGG	1 cut(s)	509
Bst4CI	ACNGT	3 cut(s)	166, 193, 296
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstAUI	TGTACA	1 cut(s)	102
BstC8I	GCNNGC	1 cut(s)	32
BstDSI	CCRYGG	1 cut(s)	165
BstF5I	GGATG	6 cut(s)	96, 205, 319, 333, 346, 462
BstKTI	GATC	3 cut(s)	126, 222, 388
BstMAI	GTCTC	3 cut(s)	77, 155, 285
BstMBI	GATC	3 cut(s)	123, 219, 385
BstMWI	GCNNNNNNNGC	2 cut(s)	404, 539
BstNI	CCWGG	1 cut(s)	509
BstSCI	CCNGG	1 cut(s)	507
BstV1I	GCAGC	2 cut(s)	333, 394
BstX2I	RGATCY	2 cut(s)	219, 385
BstYI	RGATCY	2 cut(s)	219, 385
BsuRI	GGCC	2 cut(s)	432, 507
BtgI	CCRYGG	1 cut(s)	165
BtsCI	GGATG	6 cut(s)	96, 205, 319, 333, 346, 462
BtsIMutI	CAGTG	1 cut(s)	454
Cac8I	GCNNGC	1 cut(s)	32
Cfr10I	RCCGGY	1 cut(s)	30
CseI	GACGC	1 cut(s)	440
Csp6I	GTAC	2 cut(s)	103, 460
CviQI	GTAC	2 cut(s)	103, 460
DpnI	GATC	3 cut(s)	125, 221, 387
DpnII	GATC	3 cut(s)	123, 219, 385
Eco147I	AGGCCT	1 cut(s)	507
Eco24I	GRGCYC	1 cut(s)	9
Eco31I	GGTCTC	3 cut(s)	77, 155, 285
EcoRI	GAATTC	1 cut(s)	57
EcoRII	CCWGG	1 cut(s)	507
EcoT38I	GRGCYC	1 cut(s)	9
FaiI	YATR	2 cut(s)	499, 501
Fnu4HI	GCNGC	3 cut(s)	81, 347, 408
FokI	GGATG	6 cut(s)	83, 212, 326, 340, 353, 449
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	3 cut(s)	81, 347, 408
FspBI	CTAG	1 cut(s)	309
GluI	GCNGC	3 cut(s)	81, 347, 408
GsuI	CTGGAG	1 cut(s)	507
HaeIII	GGCC	2 cut(s)	432, 507
HapII	CCGG	1 cut(s)	31
HgaI	GACGC	1 cut(s)	440
HindIII	AAGCTT	1 cut(s)	425
HinfI	GANTC	1 cut(s)	136
HpaII	CCGG	1 cut(s)	31
HphI	GGTGA	1 cut(s)	131
Hpy166II	GTNNAC	2 cut(s)	15, 277
Hpy188I	TCNGA	4 cut(s)	63, 149, 224, 446
Hpy188III	TCNNGA	7 cut(s)	16, 74, 130, 212, 247, 466, 486
Hpy8I	GTNNAC	2 cut(s)	15, 277
Hpy99I	CGWCG	1 cut(s)	136
HpyAV	CCTTC	1 cut(s)	497
HpyCH4III	ACNGT	3 cut(s)	166, 193, 296
HpyCH4IV	ACGT	1 cut(s)	11
HpyCH4V	TGCA	2 cut(s)	322, 479
HpyF10VI	GCNNNNNNNGC	2 cut(s)	404, 539
HpySE526I	ACGT	1 cut(s)	11
KroI	GCCGGC	1 cut(s)	30
KroNI	GCCGGC	1 cut(s)	32
Kzo9I	GATC	3 cut(s)	123, 219, 385
Lsp1109I	GCAGC	2 cut(s)	333, 394
LweI	GCATC	2 cut(s)	42, 67
MaeI	CTAG	1 cut(s)	309
MaeII	ACGT	1 cut(s)	11
MaeIII	GTNAC	2 cut(s)	127, 452
MalI	GATC	3 cut(s)	125, 221, 387
MboI	GATC	3 cut(s)	123, 219, 385
MflI	RGATCY	2 cut(s)	219, 385
MhlI	GDGCHC	2 cut(s)	9, 473
MluCI	AATT	3 cut(s)	57, 317, 414
MmeI	TCCRAC	3 cut(s)	247, 469, 546
MnlI	CCTC	5 cut(s)	228, 298, 331, 443, 484
MroNI	GCCGGC	1 cut(s)	30
MroXI	GAANNNNTTC	1 cut(s)	23
MseI	TTAA	1 cut(s)	153
MspA1I	CMGCKG	1 cut(s)	83
MspI	CCGG	1 cut(s)	31
MspR9I	CCNGG	1 cut(s)	509
Mva1269I	GAATGC	1 cut(s)	409
MvaI	CCWGG	1 cut(s)	509
MwoI	GCNNNNNNNGC	2 cut(s)	404, 539
NaeI	GCCGGC	1 cut(s)	32
NdeII	GATC	3 cut(s)	123, 219, 385
NgoMIV	GCCGGC	1 cut(s)	30
NmuCI	GTSAC	2 cut(s)	127, 452
PceI	AGGCCT	1 cut(s)	507
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PctI	GAATGC	1 cut(s)	409
PdiI	GCCGGC	1 cut(s)	32
PdmI	GAANNNNTTC	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	136
PflFI	GACNNNGTC	1 cut(s)	450
PkrI	GCNGC	3 cut(s)	82, 348, 409
Psp6I	CCWGG	1 cut(s)	507
PspGI	CCWGG	1 cut(s)	507
PsuI	RGATCY	2 cut(s)	219, 385
PsyI	GACNNNGTC	1 cut(s)	450
RsaI	GTAC	2 cut(s)	104, 461
RsaNI	GTAC	2 cut(s)	103, 460
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	3 cut(s)	81, 347, 408
Sau3AI	GATC	3 cut(s)	123, 219, 385
ScrFI	CCNGG	1 cut(s)	509
SduI	GDGCHC	2 cut(s)	9, 473
SetI	ASST	9 cut(s)	14, 24, 111, 117, 188, 229, 348, 358, 429
SfaNI	GCATC	2 cut(s)	42, 67
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	3 cut(s)	57, 317, 414
SseBI	AGGCCT	1 cut(s)	507
SsiI	CCGC	1 cut(s)	81
SspMI	CTAG	1 cut(s)	309
StuI	AGGCCT	1 cut(s)	507
StyD4I	CCNGG	1 cut(s)	507
TaaI	ACNGT	3 cut(s)	166, 193, 296
TaiI	ACGT	1 cut(s)	14
TaqI	TCGA	1 cut(s)	75
TaqII	GACCGA	1 cut(s)	59
TasI	AATT	3 cut(s)	57, 317, 414
TatI	WGTACW	1 cut(s)	102
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	1 cut(s)	461
TseFI	GTSAC	2 cut(s)	127, 452
TseI	GCWGC	2 cut(s)	346, 407
Tsp45I	GTSAC	2 cut(s)	127, 452
TspDTI	ATGAA	3 cut(s)	330, 416, 516
TspRI	CASTG	1 cut(s)	461
Tth111I	GACNNNGTC	1 cut(s)	450
XapI	RAATTY	1 cut(s)	57
XmnI	GAANNNNTTC	1 cut(s)	23
XspI	CTAG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.