Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0000844

Physical Location & Seq

Genomic Coordinates Forward (+)

2343600 .. 2346131

Gene Structure 2532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1032200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGCGAATTCTGATGGTGGGTCTCGATGCGGCCGGTAAGACCACCATCTTGTACAAGCTCAAGCTCGGAGAAATCGTCACCACCATCCCCACCATTGGATTTAATGTGGAGACAGTAGAATACAAGAACATCAGCTTCACCGTCTGGGATGTCGGGGGTCAAGACAAAATCCGACCATTGTGGAGGCACTACTTCCAGAACACACAAGGTCTTATCTTTGTGGTTGATAGCAATGACAGGGATCGAGTTGTTGAGGCAAGGGATGAATTACACAGGATGTTGAATGAGGTTGATGAACTAAGGGATGCTGTTCTGCTTGTATTTGCCAACAAACAAGATCTTCCTAATGCAATGAATGCCGCCGAGATAACTGATAAGCTTGGTCTTCATTCTCTCCGTCAACGTCACTGGTACATCCAGAGTACTTGTGCAACCTCTGGAGAGGGCTTGTACGAGGGGTTGGACTGGCTTTCCAACAACATTGCTAGCAAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko05110 ko05134 map04072 map04144 map05110 map05134

Pfam Domains

Protein Families

Arf

Protein Analysis

166

Amino Acids

18.77

Weight (kDa)

5.55

Isoelectric Point (pI)

30.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	1 - 161	1.9e-76	ADP-ribosylation factor family
Roc	PF08477	2 - 113	6.1e-14	Ras of Complex, Roc, domain of DAPkinase
SRPRB	PF09439	2 - 127	4e-13	Signal recognition particle receptor beta subunit
Ras	PF00071	2 - 157	2.3e-12	Ras family
Gtr1_RagA	PF04670	2 - 125	3.6e-11	Gtr1/RagA G protein conserved region
G-alpha	PF00503	28 - 94	7.6e-10	G-protein alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14670 AT5G14670 AT5G14670
fragaria_vesca	FvH4_1g26580 FvH4_2g05330 FvH4_4g34150 FvH4_6g50940
malus_domestica	MD02G1178300.v1.1 MD05G1087900.v1.1 MD09G1288000.v1.1 MD13G1093800.v1.1 MD16G1095100.v1.1 MD17G1032200.v1.1 MD17G1280300.v1.1
prunus_persica	Prupe.1G251500_v2.0.a1 Prupe.1G251500_v2.0.a1 Prupe.1G251500_v2.0.a1 Prupe.3G005200_v2.0.a1 Prupe.3G005200_v2.0.a1 Prupe.3G005200_v2.0.a1 Prupe.6G229500_v2.0.a1 Prupe.6G229500_v2.0.a1 Prupe.8G134000_v2.0.a1
pyrus_communis	pycom02g14440 pycom05g08740 pycom09g19540 pycom16g08120 pycom17g27820
rosa_chinensis	RchiOBHm_Chr2g0106611 RchiOBHm_Chr2g0172341 RchiOBHm_Chr3g0486681 RchiOBHm_Chr4g0443661 RchiOBHm_Chr6g0255541
rosa_laevigata	RLG00000005904 RLG00000014832 RLG00000017521 RLG00000023067
rosa_multiflora	Rmu_co8483849.1_g000001 Rmu_sc0000261.1_g000013 Rmu_sc0000467.1_g000011 Rmu_sc0001426.1_g000018 Rmu_sc0002360.1_g000004 Rmu_sc0006202.1_g000005 Rmu_sc0006221.1_g000007
rosa_roxburghii	Rroxscaffold_2G00136970 Rroxscaffold_5G00384210 Rroxscaffold_6G00395670 Rroxscaffold_7G00209900
rosa_rugosa	Rorug02G0136700 Rorug02G0136800 Rorug03G0226500 Rorug03G0226600 Rorug03G0226700 Rorug05G0559300
rosa_samantha	Rh2BG198900 Rh2BG647400 Rh2CG614300 Rh2DG194100 Rh2DG662200 Rh4CG431500 Rh6AG077800 Rh6DG065500
rosa_wichuraiana	Rw2G014750 Rw2G052480 Rw3G024590 Rw4G034860 Rw6G006700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	29, 360
AclWI	GGATC	1 cut(s)	249
AcoI	YGGCCR	1 cut(s)	30
AcsI	RAATTY	1 cut(s)	6
AfaI	GTAC	4 cut(s)	53, 413, 424, 452
AfiI	CCNNNNNNNGG	1 cut(s)	95
AgsI	TTSAA	1 cut(s)	283
AluBI	AGCT	4 cut(s)	58, 64, 135, 379
AluI	AGCT	4 cut(s)	58, 64, 135, 379
Alw26I	GTCTC	2 cut(s)	26, 104
AlwI	GGATC	1 cut(s)	249
AoxI	GGCC	1 cut(s)	30
ApoI	RAATTY	1 cut(s)	6
AsuHPI	GGTGA	2 cut(s)	70, 130
AsuNHI	GCTAGC	1 cut(s)	485
BbsI	GAAGAC	1 cut(s)	377
BccI	CCATC	3 cut(s)	7, 53, 92
BcoDI	GTCTC	2 cut(s)	26, 104
BfaI	CTAG	1 cut(s)	486
BglII	AGATCT	1 cut(s)	337
BisI	GCNGC	2 cut(s)	30, 360
BlsI	GCNGC	2 cut(s)	31, 361
BmcAI	AGTACT	1 cut(s)	424
BmsI	GCATC	2 cut(s)	16, 295
BmtI	GCTAGC	1 cut(s)	489
BpiI	GAAGAC	1 cut(s)	377
BpmI	CTGGAG	1 cut(s)	459
BpuEI	CTTGAG	1 cut(s)	44
BsaI	GGTCTC	1 cut(s)	26
BsaXI	ACNNNNNCTCC	2 cut(s)	60, 90
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse118I	RCCGGY	1 cut(s)	32
Bse1I	ACTGG	2 cut(s)	413, 470
Bse3DI	GCAATG	3 cut(s)	238, 357, 480
BseGI	GGATG	6 cut(s)	84, 154, 268, 282, 310, 414
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMI	GCAATG	3 cut(s)	238, 357, 480
BseNI	ACTGG	2 cut(s)	413, 470
BseX3I	CGGCCG	1 cut(s)	30
Bsh1285I	CGRYCG	1 cut(s)	33
BshFI	GGCC	1 cut(s)	32
BsiEI	CGRYCG	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	33
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmAI	GTCTC	2 cut(s)	26, 104
BsmI	GAATGC	1 cut(s)	361
BsnI	GGCC	1 cut(s)	32
Bso31I	GGTCTC	1 cut(s)	26
Bsp1407I	TGTACA	1 cut(s)	51
Bsp143I	GATC	2 cut(s)	241, 337
BspACI	CCGC	2 cut(s)	29, 360
BspANI	GGCC	1 cut(s)	32
BspOI	GCTAGC	1 cut(s)	489
BspPI	GGATC	1 cut(s)	249
BspTNI	GGTCTC	1 cut(s)	26
BsrDI	GCAATG	3 cut(s)	238, 357, 480
BsrFI	RCCGGY	1 cut(s)	32
BsrGI	TGTACA	1 cut(s)	51
BsrI	ACTGG	2 cut(s)	413, 470
BssAI	RCCGGY	1 cut(s)	32
BssMI	GATC	2 cut(s)	241, 337
Bst4CI	ACNGT	2 cut(s)	115, 142
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstAUI	TGTACA	1 cut(s)	51
BstC8I	GCNNGC	1 cut(s)	487
BstDEI	CTNAG	1 cut(s)	299
BstF5I	GGATG	6 cut(s)	84, 154, 268, 282, 310, 414
BstKTI	GATC	2 cut(s)	244, 340
BstMAI	GTCTC	2 cut(s)	26, 104
BstMBI	GATC	2 cut(s)	241, 337
BstMCI	CGRYCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	2 cut(s)	356, 491
BstV2I	GAAGAC	1 cut(s)	377
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
BstZI	CGGCCG	1 cut(s)	30
BsuRI	GGCC	1 cut(s)	32
BtsCI	GGATG	6 cut(s)	84, 154, 268, 282, 310, 414
BtsIMutI	CAGTG	1 cut(s)	406
Cac8I	GCNNGC	1 cut(s)	487
Cfr10I	RCCGGY	1 cut(s)	32
Csp6I	GTAC	4 cut(s)	52, 412, 423, 451
CviAII	CATG	1 cut(s)	495
CviJI	RGCY	7 cut(s)	32, 58, 64, 135, 379, 447, 469
CviKI_1	RGCY	7 cut(s)	32, 58, 64, 135, 379, 447, 469
CviQI	GTAC	4 cut(s)	52, 412, 423, 451
DdeI	CTNAG	1 cut(s)	299
DpnI	GATC	2 cut(s)	243, 339
DpnII	GATC	2 cut(s)	241, 337
EaeI	YGGCCR	1 cut(s)	30
EagI	CGGCCG	1 cut(s)	30
EclXI	CGGCCG	1 cut(s)	30
Eco31I	GGTCTC	1 cut(s)	26
Eco52I	CGGCCG	1 cut(s)	30
EcoRI	GAATTC	1 cut(s)	6
FaeI	CATG	1 cut(s)	498
FaiI	YATR	1 cut(s)	496
FatI	CATG	1 cut(s)	494
Fnu4HI	GCNGC	2 cut(s)	30, 360
FokI	GGATG	6 cut(s)	71, 161, 275, 289, 317, 401
Fsp4HI	GCNGC	2 cut(s)	30, 360
FspBI	CTAG	1 cut(s)	486
GluI	GCNGC	2 cut(s)	30, 360
GsuI	CTGGAG	1 cut(s)	459
HaeIII	GGCC	1 cut(s)	32
HapII	CCGG	1 cut(s)	33
Hin1II	CATG	1 cut(s)	498
HincII	GTYRAC	1 cut(s)	401
HindII	GTYRAC	1 cut(s)	401
HindIII	AAGCTT	1 cut(s)	377
HpaII	CCGG	1 cut(s)	33
HphI	GGTGA	2 cut(s)	70, 130
Hpy166II	GTNNAC	1 cut(s)	401
Hpy188I	TCNGA	3 cut(s)	12, 68, 173
Hpy188III	TCNNGA	5 cut(s)	23, 161, 196, 418, 438
Hpy8I	GTNNAC	1 cut(s)	401
HpyCH4III	ACNGT	2 cut(s)	115, 142
HpyCH4IV	ACGT	1 cut(s)	403
HpyCH4V	TGCA	2 cut(s)	350, 431
HpyF10VI	GCNNNNNNNGC	2 cut(s)	356, 491
HpyF3I	CTNAG	1 cut(s)	299
HpySE526I	ACGT	1 cut(s)	403
Hsp92II	CATG	1 cut(s)	498
Kzo9I	GATC	2 cut(s)	241, 337
LpnPI	CCDG	9 cut(s)	46, 130, 209, 223, 259, 394, 423, 431, 451
LweI	GCATC	2 cut(s)	16, 295
MaeI	CTAG	1 cut(s)	486
MaeII	ACGT	1 cut(s)	403
MaeIII	GTNAC	2 cut(s)	76, 404
MalI	GATC	2 cut(s)	243, 339
MboI	GATC	2 cut(s)	241, 337
MboII	GAAGA	2 cut(s)	332, 377
MflI	RGATCY	1 cut(s)	337
MluCI	AATT	2 cut(s)	6, 266
MmeI	TCCRAC	3 cut(s)	196, 441, 498
MnlI	CCTC	6 cut(s)	177, 247, 280, 436, 445, 448
MseI	TTAA	1 cut(s)	102
MspI	CCGG	1 cut(s)	33
Mva1269I	GAATGC	1 cut(s)	361
MwoI	GCNNNNNNNGC	2 cut(s)	356, 491
NdeII	GATC	2 cut(s)	241, 337
NheI	GCTAGC	1 cut(s)	485
NlaIII	CATG	1 cut(s)	498
NmeAIII	GCCGAG	1 cut(s)	388
NmuCI	GTSAC	2 cut(s)	76, 404
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PctI	GAATGC	1 cut(s)	361
PkrI	GCNGC	2 cut(s)	31, 361
PsuI	RGATCY	1 cut(s)	337
RsaI	GTAC	4 cut(s)	53, 413, 424, 452
RsaNI	GTAC	4 cut(s)	52, 412, 423, 451
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	2 cut(s)	30, 360
Sau3AI	GATC	2 cut(s)	241, 337
ScaI	AGTACT	1 cut(s)	424
SetI	ASST	8 cut(s)	60, 66, 137, 211, 291, 381, 406, 437
SfaNI	GCATC	2 cut(s)	16, 295
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	2 cut(s)	6, 266
SsiI	CCGC	2 cut(s)	29, 360
SspMI	CTAG	1 cut(s)	486
TaaI	ACNGT	2 cut(s)	115, 142
TaiI	ACGT	1 cut(s)	406
TaqI	TCGA	2 cut(s)	24, 244
TasI	AATT	2 cut(s)	6, 266
TatI	WGTACW	2 cut(s)	51, 422
TauI	GCSGC	2 cut(s)	32, 362
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TscAI	CASTG	1 cut(s)	413
TseFI	GTSAC	2 cut(s)	76, 404
Tsp45I	GTSAC	2 cut(s)	76, 404
TspDTI	ATGAA	4 cut(s)	279, 309, 368, 377
TspGWI	ACGGA	1 cut(s)	386
TspRI	CASTG	1 cut(s)	413
XapI	RAATTY	1 cut(s)	6
XspI	CTAG	1 cut(s)	486
ZrmI	AGTACT	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.