Prupe.6G229500_v2.0.a1
ERF Family

Belongs to the small GTPase superfamily. Arf family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000844
Physical Location & Seq
Forward (+)
23289950 .. 23291928
1979 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G229500.2

Sequence Viewer

Length: 549 bp
ATGGGTATGGCAATATCTAGGATGGTGAAGATGCTCTTTGCAAGGAAAGAAATGAGAATACTAATGGTGGGTCTTGATGCTGCTGGAAAAACCACCATCCTCTACAAGCTCAAACTTGGAGAGGTTGTCACAACCATTCCCACAATTGGGTTCAATGTGGAAACTGTTGAATACAAAAATGTAAGCTTCACTGTCTGGGATGTAGGAGGACAAGACAAGATTCGGCCACTATGGAGACACTATTTTCAGAACACTCAGGGTCTTATCTTTGTAGTGGATAGCAATGATAGAGACAGGGTTTCAGAAGCCAGAGATGAGCTCCACCGAATGCTTAGTGAGGATGAACTCCGTGAAGCGACACTGCTTGTGTTTGCCAACAAGCAAGATCTTCCAAATGCCATGAGTGTTTCTGAGATCACTGATAAGCTTGGCCTGCATTCACTCCGCCAACGCCGCTGGTACATTCAGGCTGCTTGTGCCACCTCTGGCCAAGGACTTTATGAGGGGCTTGATTGGCTATCCAGCAACATCTCAAGCAAGGCACGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04072 ko04144 ko05110 ko05134 map04072 map04144 map05110 map05134
Pfam Domains
Protein Families
Arf

Protein Analysis

183

Amino Acids

20.73

Weight (kDa)

8.69

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 445, 454
AcoI YGGCCR 2 cut(s) 224, 487
AfaI GTAC 1 cut(s) 461
AfiI CCNNNNNNNGG 2 cut(s) 146, 147
AgsI TTSAA 2 cut(s) 154, 170
AluBI AGCT 4 cut(s) 109, 186, 319, 427
AluI AGCT 4 cut(s) 109, 186, 319, 427
Alw21I GWGCWC 1 cut(s) 321
Alw26I GTCTC 2 cut(s) 229, 285
AoxI GGCC 3 cut(s) 224, 430, 487
ApeKI GCWGC 2 cut(s) 80, 470
AsuHPI GGTGA 1 cut(s) 37
BalI TGGCCA 1 cut(s) 489
BanII GRGCYC 1 cut(s) 321
Bbv12I GWGCWC 1 cut(s) 321
BbvI GCAGC 2 cut(s) 67, 457
BccI CCATC 2 cut(s) 16, 104
BcoDI GTCTC 2 cut(s) 229, 285
BfaI CTAG 1 cut(s) 18
BglII AGATCT 1 cut(s) 385
BisI GCNGC 3 cut(s) 81, 454, 471
BlsI GCNGC 3 cut(s) 82, 455, 472
BmsI GCATC 2 cut(s) 21, 67
BplI GAGNNNNNCTC 2 cut(s) 303, 335
BpuEI CTTGAG 1 cut(s) 517
BsaJI CCNNGG 1 cut(s) 490
BsaXI ACNNNNNCTCC 2 cut(s) 111, 141
Bsc4I CCNNNNNNNGG 2 cut(s) 146, 147
Bse3DI GCAATG 1 cut(s) 289
BseDI CCNNGG 1 cut(s) 490
BseGI GGATG 4 cut(s) 27, 96, 205, 346
BseLI CCNNNNNNNGG 2 cut(s) 146, 147
BseMI GCAATG 1 cut(s) 289
BseMII CTCAG 2 cut(s) 269, 402
BseXI GCAGC 2 cut(s) 67, 457
BshFI GGCC 3 cut(s) 226, 432, 489
BsiHKAI GWGCWC 1 cut(s) 321
BslI CCNNNNNNNGG 2 cut(s) 146, 147
BsmAI GTCTC 2 cut(s) 229, 285
BsmI GAATGC 2 cut(s) 333, 436
BsnI GGCC 3 cut(s) 226, 432, 489
Bsp1286I GDGCHC 1 cut(s) 321
Bsp143I GATC 2 cut(s) 385, 414
BspACI CCGC 2 cut(s) 445, 454
BspANI GGCC 3 cut(s) 226, 432, 489
BspCNI CTCAG 2 cut(s) 268, 403
BsrDI GCAATG 1 cut(s) 289
BssECI CCNNGG 1 cut(s) 490
BssMI GATC 2 cut(s) 385, 414
BssT1I CCWWGG 1 cut(s) 490
Bst4CI ACNGT 2 cut(s) 166, 193
BstC8I GCNNGC 1 cut(s) 434
BstDEI CTNAG 3 cut(s) 255, 332, 411
BstF5I GGATG 4 cut(s) 27, 96, 205, 346
BstKTI GATC 2 cut(s) 388, 417
BstMAI GTCTC 2 cut(s) 229, 285
BstMBI GATC 2 cut(s) 385, 414
BstMWI GCNNNNNNNGC 4 cut(s) 433, 453, 476, 514
BstV1I GCAGC 2 cut(s) 67, 457
BstX2I RGATCY 1 cut(s) 385
BstYI RGATCY 1 cut(s) 385
BsuRI GGCC 3 cut(s) 226, 432, 489
BtsCI GGATG 4 cut(s) 27, 96, 205, 346
BtsI GCAGTG 1 cut(s) 359
BtsIMutI CAGTG 3 cut(s) 189, 359, 417
Cac8I GCNNGC 1 cut(s) 434
Csp6I GTAC 1 cut(s) 460
CviAII CATG 1 cut(s) 400
CviQI GTAC 1 cut(s) 460
DdeI CTNAG 3 cut(s) 255, 332, 411
DpnI GATC 2 cut(s) 387, 416
DpnII GATC 2 cut(s) 385, 414
EaeI YGGCCR 2 cut(s) 224, 487
EciI GGCGGA 1 cut(s) 434
Ecl136II GAGCTC 1 cut(s) 319
Eco130I CCWWGG 1 cut(s) 490
Eco24I GRGCYC 1 cut(s) 321
Eco53kI GAGCTC 1 cut(s) 319
EcoICRI GAGCTC 1 cut(s) 319
EcoT14I CCWWGG 1 cut(s) 490
EcoT38I GRGCYC 1 cut(s) 321
ErhI CCWWGG 1 cut(s) 490
FaeI CATG 1 cut(s) 403
FaiI YATR 4 cut(s) 8, 232, 401, 501
FalI AAGNNNNNCTT 2 cut(s) 20, 52
FatI CATG 1 cut(s) 399
Fnu4HI GCNGC 3 cut(s) 81, 454, 471
FokI GGATG 4 cut(s) 34, 83, 212, 353
FriOI GRGCYC 1 cut(s) 321
Fsp4HI GCNGC 3 cut(s) 81, 454, 471
FspBI CTAG 1 cut(s) 18
GluI GCNGC 3 cut(s) 81, 454, 471
HaeIII GGCC 3 cut(s) 226, 432, 489
Hin1II CATG 1 cut(s) 403
HindIII AAGCTT 2 cut(s) 184, 425
HinfI GANTC 1 cut(s) 220
HphI GGTGA 1 cut(s) 37
Hpy188I TCNGA 3 cut(s) 249, 304, 412
Hpy188III TCNNGA 1 cut(s) 74
HpyCH4III ACNGT 2 cut(s) 166, 193
HpyCH4V TGCA 2 cut(s) 41, 436
HpyF10VI GCNNNNNNNGC 4 cut(s) 433, 453, 476, 514
HpyF3I CTNAG 3 cut(s) 255, 332, 411
Hsp92II CATG 1 cut(s) 403
Kzo9I GATC 2 cut(s) 385, 414
LmnI GCTCC 1 cut(s) 324
Lsp1109I GCAGC 2 cut(s) 67, 457
LweI GCATC 2 cut(s) 21, 67
MaeI CTAG 1 cut(s) 18
MaeIII GTNAC 1 cut(s) 127
MalI GATC 2 cut(s) 387, 416
MboI GATC 2 cut(s) 385, 414
MboII GAAGA 2 cut(s) 40, 380
MfeI CAATTG 1 cut(s) 144
MflI RGATCY 1 cut(s) 385
MhlI GDGCHC 1 cut(s) 321
MlsI TGGCCA 1 cut(s) 489
MluCI AATT 1 cut(s) 144
MluNI TGGCCA 1 cut(s) 489
MnlI CCTC 6 cut(s) 110, 115, 200, 331, 493, 496
Mox20I TGGCCA 1 cut(s) 489
MscI TGGCCA 1 cut(s) 489
Msp20I TGGCCA 1 cut(s) 489
MspA1I CMGCKG 1 cut(s) 456
MunI CAATTG 1 cut(s) 144
Mva1269I GAATGC 2 cut(s) 333, 436
MwoI GCNNNNNNNGC 4 cut(s) 433, 453, 476, 514
NdeII GATC 2 cut(s) 385, 414
NlaIII CATG 1 cut(s) 403
NmuCI GTSAC 1 cut(s) 127
PctI GAATGC 2 cut(s) 333, 436
PfeI GAWTC 1 cut(s) 220
PkrI GCNGC 3 cut(s) 82, 455, 472
Psp124BI GAGCTC 1 cut(s) 321
PsuI RGATCY 1 cut(s) 385
RsaI GTAC 1 cut(s) 461
RsaNI GTAC 1 cut(s) 460
SacI GAGCTC 1 cut(s) 321
SatI GCNGC 3 cut(s) 81, 454, 471
Sau3AI GATC 2 cut(s) 385, 414
SduI GDGCHC 1 cut(s) 321
SetI ASST 6 cut(s) 111, 126, 188, 321, 429, 485
SfaNI GCATC 2 cut(s) 21, 67
SmlI CTYRAG 1 cut(s) 532
SmoI CTYRAG 1 cut(s) 532
Sse9I AATT 1 cut(s) 144
SsiI CCGC 2 cut(s) 445, 454
SspMI CTAG 1 cut(s) 18
SstI GAGCTC 1 cut(s) 321
StyI CCWWGG 1 cut(s) 490
TaaI ACNGT 2 cut(s) 166, 193
TasI AATT 1 cut(s) 144
TauI GCSGC 1 cut(s) 456
TfiI GAWTC 1 cut(s) 220
TscAI CASTG 3 cut(s) 196, 366, 424
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 2 cut(s) 80, 470
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 1 cut(s) 357
TspGWI ACGGA 1 cut(s) 338
TspRI CASTG 3 cut(s) 196, 366, 424
XspI CTAG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.