Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000844

Physical Location & Seq

Genomic Coordinates Forward (+)

16817377 .. 16819594

Gene Structure 2218 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00395670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGGGCTGTCTTTCACCAAGCTTTTCAGTCGTCTCTTTGCCAAGAAAGAGATGCGTATACTCATGGTGGGTCTCGATGCCGCTGGTAAGACCACCATTCTCTACAAGCTCAAGCTCGGCGAGATCGTCACCACCATTCCCACCATTGGATTCAATGTGGAGACTGTGGAATATAAGAACATCAGCTTTACTGTTTGGGATGTTGGGGGTCAGGACAAGATTCGACCCTTGTGGAGGCACTACTTCCAAAACACACAAGGACTTATCTTTGTGGTTGATAGCAACGATCGTGACCGTGTAGTTGAAGCTAGGGATGAGCTGCACAGAATGTTGAATGAGGATGAGTTGAGGGAAGCTGTGCTGCTTGTATTTGCTAACAAGCAAGATCTTCCAAATGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGCCTTCACTCCCTCCGTCAACGCCACTGGTATATCCAGAGCACATGTGCTACTTCTGGTGAAGGACTGTATGAGGGACTAGACTGGCTCTCAAACAACATTGCAAACAAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006471 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0019538 GO:0033036 GO:0034613 GO:0036211 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko05110 ko05134 map04072 map04144 map05110 map05134

Pfam Domains

Protein Families

Arf

Protein Analysis

181

Amino Acids

20.69

Weight (kDa)

6.43

Isoelectric Point (pI)

32.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	5 - 177	1.3e-81	ADP-ribosylation factor family
SRPRB	PF09439	16 - 143	5.9e-13	Signal recognition particle receptor beta subunit
Roc	PF08477	19 - 129	8.3e-14	Ras of Complex, Roc, domain of DAPkinase
Ras	PF00071	19 - 173	5.8e-12	Ras family
Gtr1_RagA	PF04670	19 - 141	1.6e-09	Gtr1/RagA G protein conserved region
G-alpha	PF00503	44 - 111	6e-10	G-protein alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14670 AT5G14670 AT5G14670
fragaria_vesca	FvH4_1g26580 FvH4_2g05330 FvH4_4g34150 FvH4_6g50940
malus_domestica	MD02G1178300.v1.1 MD05G1087900.v1.1 MD09G1288000.v1.1 MD13G1093800.v1.1 MD16G1095100.v1.1 MD17G1032200.v1.1 MD17G1280300.v1.1
prunus_persica	Prupe.1G251500_v2.0.a1 Prupe.1G251500_v2.0.a1 Prupe.1G251500_v2.0.a1 Prupe.3G005200_v2.0.a1 Prupe.3G005200_v2.0.a1 Prupe.3G005200_v2.0.a1 Prupe.6G229500_v2.0.a1 Prupe.6G229500_v2.0.a1 Prupe.8G134000_v2.0.a1
pyrus_communis	pycom02g14440 pycom05g08740 pycom09g19540 pycom16g08120 pycom17g27820
rosa_chinensis	RchiOBHm_Chr2g0106611 RchiOBHm_Chr2g0172341 RchiOBHm_Chr3g0486681 RchiOBHm_Chr4g0443661 RchiOBHm_Chr6g0255541
rosa_laevigata	RLG00000005904 RLG00000014832 RLG00000017521 RLG00000023067
rosa_multiflora	Rmu_co8483849.1_g000001 Rmu_sc0000261.1_g000013 Rmu_sc0000467.1_g000011 Rmu_sc0001426.1_g000018 Rmu_sc0002360.1_g000004 Rmu_sc0006202.1_g000005 Rmu_sc0006221.1_g000007
rosa_roxburghii	Rroxscaffold_2G00136970 Rroxscaffold_5G00384210 Rroxscaffold_6G00395670 Rroxscaffold_7G00209900
rosa_rugosa	Rorug02G0136700 Rorug02G0136800 Rorug03G0226500 Rorug03G0226600 Rorug03G0226700 Rorug05G0559300
rosa_samantha	Rh2BG198900 Rh2BG647400 Rh2CG614300 Rh2DG194100 Rh2DG662200 Rh4CG431500 Rh6AG077800 Rh6DG065500
rosa_wichuraiana	Rw2G014750 Rw2G052480 Rw3G024590 Rw4G034860 Rw6G006700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	58
AciI	CCGC	1 cut(s)	81
AfiI	CCNNNNNNNGG	2 cut(s)	146, 234
AflIII	ACRYGT	1 cut(s)	473
AgsI	TTSAA	3 cut(s)	154, 305, 334
AluBI	AGCT	8 cut(s)	22, 109, 115, 186, 308, 319, 356, 427
AluI	AGCT	8 cut(s)	22, 109, 115, 186, 308, 319, 356, 427
Alw21I	GWGCWC	1 cut(s)	473
Alw26I	GTCTC	3 cut(s)	38, 77, 155
AoxI	GGCC	1 cut(s)	430
ApeKI	GCWGC	3 cut(s)	319, 361, 407
AsuHPI	GGTGA	3 cut(s)	7, 121, 500
Bbv12I	GWGCWC	1 cut(s)	473
BbvI	GCAGC	3 cut(s)	306, 348, 394
BcoDI	GTCTC	3 cut(s)	38, 77, 155
BfaI	CTAG	2 cut(s)	309, 509
BglII	AGATCT	1 cut(s)	385
BisI	GCNGC	4 cut(s)	81, 320, 362, 408
BlsI	GCNGC	4 cut(s)	82, 321, 363, 409
BmsI	GCATC	2 cut(s)	42, 67
BpuEI	CTTGAG	1 cut(s)	95
BsaI	GGTCTC	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 234
Bse1I	ACTGG	2 cut(s)	461, 518
Bse3DI	GCAATG	2 cut(s)	405, 528
BseGI	GGATG	3 cut(s)	205, 319, 346
BseLI	CCNNNNNNNGG	2 cut(s)	146, 234
BseMI	GCAATG	2 cut(s)	405, 528
BseNI	ACTGG	2 cut(s)	461, 518
BseXI	GCAGC	3 cut(s)	306, 348, 394
BsgI	GTGCAG	1 cut(s)	305
Bsh1285I	CGRYCG	1 cut(s)	289
BshFI	GGCC	1 cut(s)	432
BsiEI	CGRYCG	1 cut(s)	289
BsiHKAI	GWGCWC	1 cut(s)	473
BslFI	GGGAC	1 cut(s)	519
BslI	CCNNNNNNNGG	2 cut(s)	146, 234
BsmAI	GTCTC	3 cut(s)	38, 77, 155
BsmBI	CGTCTC	1 cut(s)	38
BsmFI	GGGAC	1 cut(s)	519
BsmI	GAATGC	1 cut(s)	409
BsnI	GGCC	1 cut(s)	432
Bso31I	GGTCTC	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	473
Bsp143I	GATC	3 cut(s)	123, 286, 385
BspACI	CCGC	1 cut(s)	81
BspANI	GGCC	1 cut(s)	432
BspTNI	GGTCTC	1 cut(s)	77
BsrDI	GCAATG	2 cut(s)	405, 528
BsrI	ACTGG	2 cut(s)	461, 518
BssMI	GATC	3 cut(s)	123, 286, 385
BssNAI	GTATAC	1 cut(s)	59
Bst1107I	GTATAC	1 cut(s)	59
Bst4CI	ACNGT	4 cut(s)	166, 193, 296, 498
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstDEI	CTNAG	1 cut(s)	543
BstENI	CCTNNNNNAGG	1 cut(s)	232
BstF5I	GGATG	3 cut(s)	205, 319, 346
BstKTI	GATC	3 cut(s)	126, 289, 388
BstMAI	GTCTC	3 cut(s)	38, 77, 155
BstMBI	GATC	3 cut(s)	123, 286, 385
BstMCI	CGRYCG	1 cut(s)	289
BstMWI	GCNNNNNNNGC	2 cut(s)	404, 539
BstNSI	RCATGY	1 cut(s)	477
BstV1I	GCAGC	3 cut(s)	306, 348, 394
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
BstZ17I	GTATAC	1 cut(s)	59
BsuRI	GGCC	1 cut(s)	432
BtsCI	GGATG	3 cut(s)	205, 319, 346
BtsIMutI	CAGTG	1 cut(s)	454
CviAII	CATG	2 cut(s)	64, 474
DdeI	CTNAG	1 cut(s)	543
DpnI	GATC	3 cut(s)	125, 288, 387
DpnII	GATC	3 cut(s)	123, 286, 385
Eco31I	GGTCTC	1 cut(s)	77
EcoNI	CCTNNNNNAGG	1 cut(s)	232
Esp3I	CGTCTC	1 cut(s)	38
FaeI	CATG	2 cut(s)	67, 477
FaiI	YATR	6 cut(s)	59, 65, 174, 462, 475, 501
FaqI	GGGAC	1 cut(s)	519
FatI	CATG	2 cut(s)	63, 473
FblI	GTMKAC	1 cut(s)	58
Fnu4HI	GCNGC	4 cut(s)	81, 320, 362, 408
FokI	GGATG	3 cut(s)	212, 326, 353
Fsp4HI	GCNGC	4 cut(s)	81, 320, 362, 408
FspBI	CTAG	2 cut(s)	309, 509
GluI	GCNGC	4 cut(s)	81, 320, 362, 408
HaeIII	GGCC	1 cut(s)	432
Hin1II	CATG	2 cut(s)	67, 477
HincII	GTYRAC	1 cut(s)	449
HindII	GTYRAC	1 cut(s)	449
HindIII	AAGCTT	2 cut(s)	20, 425
HinfI	GANTC	2 cut(s)	150, 220
HphI	GGTGA	3 cut(s)	7, 121, 500
Hpy166II	GTNNAC	2 cut(s)	59, 449
Hpy188III	TCNNGA	4 cut(s)	74, 212, 290, 466
Hpy8I	GTNNAC	2 cut(s)	59, 449
HpyAV	CCTTC	2 cut(s)	443, 485
HpyCH4III	ACNGT	4 cut(s)	166, 193, 296, 498
HpyCH4V	TGCA	3 cut(s)	322, 398, 533
HpyF10VI	GCNNNNNNNGC	2 cut(s)	404, 539
HpyF3I	CTNAG	1 cut(s)	543
Hsp92II	CATG	2 cut(s)	67, 477
Kzo9I	GATC	3 cut(s)	123, 286, 385
LpnPI	CCDG	6 cut(s)	69, 197, 442, 471, 479, 499
Lsp1109I	GCAGC	3 cut(s)	306, 348, 394
LweI	GCATC	2 cut(s)	42, 67
MaeI	CTAG	2 cut(s)	309, 509
MaeIII	GTNAC	2 cut(s)	127, 290
MalI	GATC	3 cut(s)	125, 288, 387
MboI	GATC	3 cut(s)	123, 286, 385
MboII	GAAGA	1 cut(s)	380
MflI	RGATCY	1 cut(s)	385
MhlI	GDGCHC	1 cut(s)	473
MnlI	CCTC	5 cut(s)	228, 331, 342, 452, 496
MspA1I	CMGCKG	1 cut(s)	83
Mva1269I	GAATGC	1 cut(s)	409
MwoI	GCNNNNNNNGC	2 cut(s)	404, 539
NdeII	GATC	3 cut(s)	123, 286, 385
NlaIII	CATG	2 cut(s)	67, 477
NmeAIII	GCCGAG	1 cut(s)	96
NmuCI	GTSAC	2 cut(s)	127, 290
NspI	RCATGY	1 cut(s)	477
PciI	ACATGT	1 cut(s)	473
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PctI	GAATGC	1 cut(s)	409
PfeI	GAWTC	2 cut(s)	150, 220
PkrI	GCNGC	4 cut(s)	82, 321, 363, 409
Ple19I	CGATCG	1 cut(s)	289
PscI	ACATGT	1 cut(s)	473
PsuI	RGATCY	1 cut(s)	385
PvuI	CGATCG	1 cut(s)	289
SatI	GCNGC	4 cut(s)	81, 320, 362, 408
Sau3AI	GATC	3 cut(s)	123, 286, 385
SduI	GDGCHC	1 cut(s)	473
SetI	ASST	8 cut(s)	24, 111, 117, 188, 310, 321, 358, 429
SfaNI	GCATC	2 cut(s)	42, 67
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
SsiI	CCGC	1 cut(s)	81
SspMI	CTAG	2 cut(s)	309, 509
TaaI	ACNGT	4 cut(s)	166, 193, 296, 498
TaqI	TCGA	2 cut(s)	75, 223
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	2 cut(s)	150, 220
TscAI	CASTG	1 cut(s)	461
TseFI	GTSAC	2 cut(s)	127, 290
TseI	GCWGC	3 cut(s)	319, 361, 407
Tsp45I	GTSAC	2 cut(s)	127, 290
TspDTI	ATGAA	1 cut(s)	416
TspGWI	ACGGA	1 cut(s)	434
TspRI	CASTG	1 cut(s)	461
XagI	CCTNNNNNAGG	1 cut(s)	232
XceI	RCATGY	1 cut(s)	477
XmiI	GTMKAC	1 cut(s)	58
XspI	CTAG	2 cut(s)	309, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.