Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000467.1

Orthogroup ID

OG0000844

Physical Location & Seq

Genomic Coordinates Forward (+)

40320 .. 43630

Gene Structure 3311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000467.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atgcgtctttatccttccacggtttccttcctccagccaaaagttgaagaaaaaaaaatggggctgacgttcacgaagctcttcagccggcttttcgccaagaaagagatgcgaattctgatggtcggtctcgacgccgctggtaagaccaccatcttgtacaagctcaagctcggagaaatcgtcaccaccatccctaccattggatttaatgtggagactgtggaatacaagaacatcagcttcactgtgtgggatgtagggggtcaggacaagatccgtccattgtggaggcactacttccagaacactcaaggtcttatttttgtggttgatagcaatgacagggatcgagttgttgaggcgagggatgagttgcacaggatgttgaatgaggatgaactgagggatgctgttttgcttgtatttgccaacaaacaagatcttcctaatgcaatgaatgctgcagaaataactgataagcttggtcttcattctctccgccaacgtcactggtacattcagagcacatgtgcaacctctggtgagggactgtacgagggattggactggctttccaacaacattgctagcaaggcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko05110 ko05134 map04072 map04144 map05110 map05134

Pfam Domains

Protein Families

Arf

Protein Analysis

200

Amino Acids

22.93

Weight (kDa)

7.82

Isoelectric Point (pI)

36.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14670 AT5G14670 AT5G14670
fragaria_vesca	FvH4_1g26580 FvH4_2g05330 FvH4_4g34150 FvH4_6g50940
malus_domestica	MD02G1178300.v1.1 MD05G1087900.v1.1 MD09G1288000.v1.1 MD13G1093800.v1.1 MD16G1095100.v1.1 MD17G1032200.v1.1 MD17G1280300.v1.1
prunus_persica	Prupe.1G251500_v2.0.a1 Prupe.1G251500_v2.0.a1 Prupe.1G251500_v2.0.a1 Prupe.3G005200_v2.0.a1 Prupe.3G005200_v2.0.a1 Prupe.3G005200_v2.0.a1 Prupe.6G229500_v2.0.a1 Prupe.6G229500_v2.0.a1 Prupe.8G134000_v2.0.a1
pyrus_communis	pycom02g14440 pycom05g08740 pycom09g19540 pycom16g08120 pycom17g27820
rosa_chinensis	RchiOBHm_Chr2g0106611 RchiOBHm_Chr2g0172341 RchiOBHm_Chr3g0486681 RchiOBHm_Chr4g0443661 RchiOBHm_Chr6g0255541
rosa_laevigata	RLG00000005904 RLG00000014832 RLG00000017521 RLG00000023067
rosa_multiflora	Rmu_co8483849.1_g000001 Rmu_sc0000261.1_g000013 Rmu_sc0000467.1_g000011 Rmu_sc0001426.1_g000018 Rmu_sc0002360.1_g000004 Rmu_sc0006202.1_g000005 Rmu_sc0006221.1_g000007
rosa_roxburghii	Rroxscaffold_2G00136970 Rroxscaffold_5G00384210 Rroxscaffold_6G00395670 Rroxscaffold_7G00209900
rosa_rugosa	Rorug02G0136700 Rorug02G0136800 Rorug03G0226500 Rorug03G0226600 Rorug03G0226700 Rorug05G0559300
rosa_samantha	Rh2BG198900 Rh2BG647400 Rh2CG614300 Rh2DG194100 Rh2DG662200 Rh4CG431500 Rh6AG077800 Rh6DG065500
rosa_wichuraiana	Rw2G014750 Rw2G052480 Rw3G024590 Rw4G034860 Rw6G006700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	138, 502
AclWI	GGATC	2 cut(s)	271, 357
AcsI	RAATTY	1 cut(s)	114
AcuI	CTGAAG	1 cut(s)	67
AcyI	GRCGYC	1 cut(s)	135
AdeI	CACNNNGTG	1 cut(s)	252
AfaI	GTAC	3 cut(s)	161, 518, 557
AfiI	CCNNNNNNNGG	1 cut(s)	203
AflIII	ACRYGT	1 cut(s)	530
AgsI	TTSAA	2 cut(s)	47, 391
AluBI	AGCT	5 cut(s)	79, 166, 172, 243, 484
AluI	AGCT	5 cut(s)	79, 166, 172, 243, 484
Alw21I	GWGCWC	1 cut(s)	530
Alw26I	GTCTC	2 cut(s)	134, 212
AlwI	GGATC	2 cut(s)	271, 357
ApeKI	GCWGC	1 cut(s)	464
ApoI	RAATTY	1 cut(s)	114
Asp700I	GAANNNNTTC	1 cut(s)	80
AsuHPI	GGTGA	2 cut(s)	178, 557
AsuNHI	GCTAGC	1 cut(s)	590
BbsI	GAAGAC	1 cut(s)	482
Bbv12I	GWGCWC	1 cut(s)	530
BbvI	GCAGC	1 cut(s)	451
BccI	CCATC	3 cut(s)	115, 161, 200
BcoDI	GTCTC	2 cut(s)	134, 212
BfaI	CTAG	1 cut(s)	591
BfmI	CTRYAG	1 cut(s)	465
BglII	AGATCT	1 cut(s)	442
BisI	GCNGC	2 cut(s)	138, 465
BlsI	GCNGC	2 cut(s)	139, 466
BmsI	GCATC	2 cut(s)	99, 400
BmtI	GCTAGC	1 cut(s)	594
BpiI	GAAGAC	1 cut(s)	482
BpmI	CTGGAG	1 cut(s)	17
BpuEI	CTTGAG	2 cut(s)	152, 297
BsaHI	GRCGYC	1 cut(s)	135
BsaI	GGTCTC	1 cut(s)	134
BsaJI	CCNNGG	1 cut(s)	18
BsaXI	ACNNNNNCTCC	2 cut(s)	168, 198
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
Bse118I	RCCGGY	1 cut(s)	87
Bse1I	ACTGG	2 cut(s)	518, 575
Bse3DI	GCAATG	3 cut(s)	346, 462, 585
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	6 cut(s)	192, 262, 376, 390, 403, 415
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMI	GCAATG	3 cut(s)	346, 462, 585
BseMII	CTCAG	1 cut(s)	395
BseNI	ACTGG	2 cut(s)	518, 575
BseXI	GCAGC	1 cut(s)	451
BsiHKAI	GWGCWC	1 cut(s)	530
BsiSI	CCGG	1 cut(s)	88
BslFI	GGGAC	1 cut(s)	564
BslI	CCNNNNNNNGG	1 cut(s)	203
BsmAI	GTCTC	2 cut(s)	134, 212
BsmFI	GGGAC	1 cut(s)	564
BsmI	GAATGC	1 cut(s)	466
Bso31I	GGTCTC	1 cut(s)	134
Bsp1286I	GDGCHC	1 cut(s)	530
Bsp1407I	TGTACA	1 cut(s)	159
Bsp143I	GATC	3 cut(s)	276, 349, 442
BspACI	CCGC	2 cut(s)	138, 502
BspCNI	CTCAG	1 cut(s)	396
BspMAI	CTGCAG	1 cut(s)	469
BspOI	GCTAGC	1 cut(s)	594
BspPI	GGATC	2 cut(s)	271, 357
BspQI	GCTCTTC	1 cut(s)	86
BspTNI	GGTCTC	1 cut(s)	134
BsrDI	GCAATG	3 cut(s)	346, 462, 585
BsrFI	RCCGGY	1 cut(s)	87
BsrGI	TGTACA	1 cut(s)	159
BsrI	ACTGG	2 cut(s)	518, 575
BssAI	RCCGGY	1 cut(s)	87
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	3 cut(s)	276, 349, 442
BssNI	GRCGYC	1 cut(s)	135
Bst4CI	ACNGT	4 cut(s)	22, 223, 250, 555
Bst6I	CTCTTC	1 cut(s)	86
BstACI	GRCGYC	1 cut(s)	135
BstAPI	GCANNNNNTGC	1 cut(s)	461
BstAUI	TGTACA	1 cut(s)	159
BstC8I	GCNNGC	2 cut(s)	89, 592
BstDEI	CTNAG	1 cut(s)	404
BstDSI	CCRYGG	1 cut(s)	18
BstF5I	GGATG	6 cut(s)	192, 262, 376, 390, 403, 415
BstKTI	GATC	3 cut(s)	279, 352, 445
BstMAI	GTCTC	2 cut(s)	134, 212
BstMBI	GATC	3 cut(s)	276, 349, 442
BstMWI	GCNNNNNNNGC	2 cut(s)	461, 596
BstNSI	RCATGY	1 cut(s)	534
BstSFI	CTRYAG	1 cut(s)	465
BstV1I	GCAGC	1 cut(s)	451
BstV2I	GAAGAC	1 cut(s)	482
BstX2I	RGATCY	2 cut(s)	276, 442
BstYI	RGATCY	2 cut(s)	276, 442
BtgI	CCRYGG	1 cut(s)	18
BtsCI	GGATG	6 cut(s)	192, 262, 376, 390, 403, 415
BtsIMutI	CAGTG	2 cut(s)	246, 511
Cac8I	GCNNGC	2 cut(s)	89, 592
Cfr10I	RCCGGY	1 cut(s)	87
CseI	GACGC	1 cut(s)	143
Csp6I	GTAC	3 cut(s)	160, 517, 556
CviAII	CATG	1 cut(s)	531
CviQI	GTAC	3 cut(s)	160, 517, 556
DdeI	CTNAG	1 cut(s)	404
DpnI	GATC	3 cut(s)	278, 351, 444
DpnII	GATC	3 cut(s)	276, 349, 442
DraIII	CACNNNGTG	1 cut(s)	252
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
EciI	GGCGGA	1 cut(s)	491
Eco31I	GGTCTC	1 cut(s)	134
Eco57I	CTGAAG	1 cut(s)	67
EcoRI	GAATTC	1 cut(s)	114
FaeI	CATG	1 cut(s)	534
FaiI	YATR	1 cut(s)	532
FaqI	GGGAC	1 cut(s)	564
FatI	CATG	1 cut(s)	530
Fnu4HI	GCNGC	2 cut(s)	138, 465
FokI	GGATG	6 cut(s)	179, 269, 383, 397, 410, 422
Fsp4HI	GCNGC	2 cut(s)	138, 465
FspBI	CTAG	1 cut(s)	591
GluI	GCNGC	2 cut(s)	138, 465
GsuI	CTGGAG	1 cut(s)	17
HapII	CCGG	1 cut(s)	88
HgaI	GACGC	1 cut(s)	143
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	1 cut(s)	534
HindIII	AAGCTT	1 cut(s)	482
HpaII	CCGG	1 cut(s)	88
HphI	GGTGA	2 cut(s)	178, 557
Hpy166II	GTNNAC	1 cut(s)	72
Hpy188I	TCNGA	3 cut(s)	120, 176, 525
Hpy188III	TCNNGA	4 cut(s)	73, 131, 269, 304
Hpy8I	GTNNAC	1 cut(s)	72
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	2 cut(s)	24, 37
HpyCH4III	ACNGT	4 cut(s)	22, 223, 250, 555
HpyCH4IV	ACGT	2 cut(s)	68, 508
HpyCH4V	TGCA	4 cut(s)	379, 455, 467, 536
HpyF10VI	GCNNNNNNNGC	2 cut(s)	461, 596
HpyF3I	CTNAG	1 cut(s)	404
HpySE526I	ACGT	2 cut(s)	68, 508
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	1 cut(s)	534
KroI	GCCGGC	1 cut(s)	87
KroNI	GCCGGC	1 cut(s)	89
Kzo9I	GATC	3 cut(s)	276, 349, 442
LguI	GCTCTTC	1 cut(s)	86
Lsp1109I	GCAGC	1 cut(s)	451
LweI	GCATC	2 cut(s)	99, 400
MaeI	CTAG	1 cut(s)	591
MaeII	ACGT	2 cut(s)	68, 508
MaeIII	GTNAC	2 cut(s)	184, 509
MalI	GATC	3 cut(s)	278, 351, 444
MboI	GATC	3 cut(s)	276, 349, 442
MboII	GAAGA	4 cut(s)	59, 73, 437, 482
MflI	RGATCY	2 cut(s)	276, 442
MhlI	GDGCHC	1 cut(s)	530
MluCI	AATT	1 cut(s)	114
MmeI	TCCRAC	1 cut(s)	603
MnlI	CCTC	9 cut(s)	41, 285, 355, 360, 388, 399, 541, 550, 553
MroNI	GCCGGC	1 cut(s)	87
MroXI	GAANNNNTTC	1 cut(s)	80
MseI	TTAA	2 cut(s)	210, 601
MspA1I	CMGCKG	1 cut(s)	140
MspI	CCGG	1 cut(s)	88
Mva1269I	GAATGC	1 cut(s)	466
MwoI	GCNNNNNNNGC	2 cut(s)	461, 596
NaeI	GCCGGC	1 cut(s)	89
NdeII	GATC	3 cut(s)	276, 349, 442
NgoMIV	GCCGGC	1 cut(s)	87
NheI	GCTAGC	1 cut(s)	590
NlaIII	CATG	1 cut(s)	534
NmuCI	GTSAC	2 cut(s)	184, 509
NspI	RCATGY	1 cut(s)	534
PciI	ACATGT	1 cut(s)	530
PciSI	GCTCTTC	1 cut(s)	86
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PctI	GAATGC	1 cut(s)	466
PdiI	GCCGGC	1 cut(s)	89
PdmI	GAANNNNTTC	1 cut(s)	80
PkrI	GCNGC	2 cut(s)	139, 466
PscI	ACATGT	1 cut(s)	530
PstI	CTGCAG	1 cut(s)	469
PsuI	RGATCY	2 cut(s)	276, 442
RsaI	GTAC	3 cut(s)	161, 518, 557
RsaNI	GTAC	3 cut(s)	160, 517, 556
SapI	GCTCTTC	1 cut(s)	86
SaqAI	TTAA	2 cut(s)	210, 601
SatI	GCNGC	2 cut(s)	138, 465
Sau3AI	GATC	3 cut(s)	276, 349, 442
SduI	GDGCHC	1 cut(s)	530
SetI	ASST	9 cut(s)	71, 81, 168, 174, 245, 319, 486, 511, 542
SfaNI	GCATC	2 cut(s)	99, 400
SfcI	CTRYAG	1 cut(s)	465
SmlI	CTYRAG	2 cut(s)	167, 312
SmoI	CTYRAG	2 cut(s)	167, 312
Sse9I	AATT	1 cut(s)	114
SsiI	CCGC	2 cut(s)	138, 502
SspMI	CTAG	1 cut(s)	591
TaaI	ACNGT	4 cut(s)	22, 223, 250, 555
TaiI	ACGT	2 cut(s)	71, 511
TaqI	TCGA	2 cut(s)	132, 352
TaqII	GACCGA	1 cut(s)	116
TasI	AATT	1 cut(s)	114
TatI	WGTACW	1 cut(s)	159
TauI	GCSGC	1 cut(s)	140
Tru1I	TTAA	2 cut(s)	210, 601
Tru9I	TTAA	2 cut(s)	210, 601
TscAI	CASTG	2 cut(s)	253, 518
TseFI	GTSAC	2 cut(s)	184, 509
TseI	GCWGC	1 cut(s)	464
Tsp45I	GTSAC	2 cut(s)	184, 509
TspDTI	ATGAA	3 cut(s)	414, 473, 482
TspGWI	ACGGA	1 cut(s)	269
TspRI	CASTG	2 cut(s)	253, 518
XapI	RAATTY	1 cut(s)	114
XceI	RCATGY	1 cut(s)	534
XmnI	GAANNNNTTC	1 cut(s)	80
XspI	CTAG	1 cut(s)	591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.