Rorug03G0226700
ERF Family

Belongs to the small GTPase superfamily. Arf family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
20833470 .. 20839484
6015 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0226700.1

Sequence Viewer

Length: 1215 bp
ATGAGGCCTAACATCGTTTCCGAGGCAGGAGTGCAGACTAGGTTGGCACAATGGTGGGAGGGCCTTCCTTTCCTTACTTCTGCGGTTGTTTTTGTTTGCACAACTATTTACTTGGTTTGCCTCTTGGCTGGATACGACTCCTTCTATGAAATATGCTTTTTGCCGTCTGCAGTTATCTCACGATTCCAAGTCTACAGGATTTTCACTGCCATTCTGTTTCATGGTTCGCTGCTTCATGTGTTGTTCAACATGATGGCTTTGGTTCCTTTGGGTTCTGAGTTGGAGAGAATTATGGGATCTGTCCGCTTGTTGTACATAATCATTATGTTGGCTACAACCAATGCGCTGCTCCATCTTCTAATTGCACTTTTGGTGGCCTATAATCCTATTAAGCCTTTTGAGTATTTGATGCATGAGTGTGCAATAGGCTTCTCAGGAATCTTGTTTTCTATGATTGTAATAGAGACAAGTCTGAGTGGACAGCAATACAGAAGTGTGTTTGGGCTCTTTAATGTGCCTGCTAAATGGTGTGCATGGATCTTACTGGTAGTGTTCCAACTTGTTATGTCTAATGTTTCATTACTGGGACACCTGTGTGGTATTCTGTCTGGCTTCGCGTATAGTTACGGCTTGTTCAATTTCCTCATTCCTGGACCATCCTTCTATTCCAAAATTGAGGCCTCCTCGTTGCTTTCAACTTGTGTGAGGCGGCCTAAATTTATTTTGTGCACTGGTGGAAATCCCTCTGCCTTCATCCCTACGTATTCAAGCCAAGGTACCACGTCTAGTGGATTATTTTCGGGAAATTTGTGGAGAAACTTATCTTCATGGATCCCACAGAGGGAAACATCTTCACAGGCAACACAAGACGGTCACATATTTCCTGGGAGGGGTAGGACACTGGGGTCCGTTCAAGGTCAGGCTGTTTCTGATGTTGATTCAGAATCAAACTTACAGGCTAGACTGTTGGATAATAGTGACTCAGAACATCCATCTGATGCAGGACGGCAGTTATCTGATGGAAGGCAAACAGTAAATAATACGGTGGCAGCTGGAGCTGAAATTCCTGTTCACCATCAGGATTATGTGGCTTCTGAAGAAGAAATACAAAAGCTTGTATCAATGGGTTTTGAAAGGACACAGGTTGAAGTTGCACTAGCAGCTGCAGATGGTGATATTAATGTGGCAGTCGAAATTCTGAGCCAACAGGGTTAG

Protein Analysis

404

Amino Acids

44.29

Weight (kDa)

5.58

Isoelectric Point (pI)

44.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DER1 PF04511 22 - 209 2.8e-07 Der1-like family
Rhomboid PF01694 62 - 213 1e-26 Rhomboid domain
UBA PF00627 366 - 400 9.8e-10 UBA/TS-N domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 904
Acc65I GGTACC 1 cut(s) 776
AccB1I GGYRCC 1 cut(s) 776
AccI GTMKAC 1 cut(s) 192
AccII CGCG 1 cut(s) 617
AciI CCGC 3 cut(s) 83, 304, 709
AclWI GGATC 4 cut(s) 304, 545, 826, 839
AcsI RAATTY 4 cut(s) 716, 805, 1062, 1194
AcuI CTGAAG 1 cut(s) 1116
AfaI GTAC 2 cut(s) 314, 778
AfiI CCNNNNNNNGG 2 cut(s) 841, 890
AgsI TTSAA 7 cut(s) 247, 637, 696, 768, 914, 1133, 1148
AjiI CACGTC 1 cut(s) 783
AjnI CCWGG 2 cut(s) 649, 883
AleI CACNNNNGTG 2 cut(s) 52, 594
AluBI AGCT 4 cut(s) 1052, 1058, 1114, 1163
AluI AGCT 4 cut(s) 1052, 1058, 1114, 1163
Alw21I GWGCWC 1 cut(s) 731
Alw26I GTCTC 1 cut(s) 458
Alw44I GTGCAC 1 cut(s) 727
AlwI GGATC 4 cut(s) 304, 545, 826, 839
AoxI GGCC 5 cut(s) 5, 61, 375, 678, 710
ApaLI GTGCAC 1 cut(s) 727
ApeKI GCWGC 5 cut(s) 229, 346, 1049, 1160, 1163
ApoI RAATTY 4 cut(s) 716, 805, 1062, 1194
AseI ATTAAT 1 cut(s) 1179
Asp718I GGTACC 1 cut(s) 776
AspLEI GCGC 1 cut(s) 346
AspS9I GGNCC 3 cut(s) 61, 653, 906
AsuHPI GGTGA 2 cut(s) 1064, 1184
AvaII GGWCC 2 cut(s) 653, 906
BaeGI GKGCMC 1 cut(s) 731
BamHI GGATCC 1 cut(s) 831
BanI GGYRCC 1 cut(s) 776
BanII GRGCYC 1 cut(s) 507
BarI GAAGNNNNNNTAC 2 cut(s) 1089, 1121
Bbv12I GWGCWC 1 cut(s) 731
BbvI GCAGC 5 cut(s) 216, 333, 1061, 1150, 1172
BccI CCATC 7 cut(s) 247, 360, 664, 1000, 1013, 1083, 1163
BceAI ACGGC 3 cut(s) 148, 643, 1022
BciT130I CCWGG 2 cut(s) 651, 885
BciVI GTATCC 1 cut(s) 125
BcoDI GTCTC 1 cut(s) 458
BfaI CTAG 4 cut(s) 39, 786, 960, 1157
BfmI CTRYAG 3 cut(s) 168, 193, 1164
BfuI GTATCC 1 cut(s) 125
BisI GCNGC 6 cut(s) 230, 347, 710, 1050, 1161, 1164
BlsI GCNGC 6 cut(s) 231, 348, 711, 1051, 1162, 1165
Bme1390I CCNGG 2 cut(s) 651, 885
Bme18I GGWCC 2 cut(s) 653, 906
BmgBI CACGTC 1 cut(s) 783
BmgT120I GGNCC 3 cut(s) 61, 653, 906
BmiI GGNNCC 4 cut(s) 264, 778, 833, 907
BmrFI CCNGG 2 cut(s) 651, 885
BmrI ACTGGG 2 cut(s) 593, 911
BmsI GCATC 2 cut(s) 399, 988
BmuI ACTGGG 2 cut(s) 593, 911
BplI GAGNNNNNCTC 2 cut(s) 668, 700
BpmI CTGGAG 1 cut(s) 1074
BsaAI YACGTR 1 cut(s) 762
BsaJI CCNNGG 3 cut(s) 21, 772, 884
Bsc4I CCNNNNNNNGG 2 cut(s) 841, 890
Bse1I ACTGG 4 cut(s) 549, 588, 736, 906
BseBI CCWGG 2 cut(s) 651, 885
BseDI CCNNGG 3 cut(s) 21, 772, 884
BseGI GGATG 3 cut(s) 656, 753, 988
BseLI CCNNNNNNNGG 2 cut(s) 841, 890
BseMII CTCAG 5 cut(s) 267, 447, 464, 996, 1190
BseNI ACTGG 4 cut(s) 549, 588, 736, 906
BseRI GAGGAG 1 cut(s) 673
BseSI GKGCMC 1 cut(s) 731
BseXI GCAGC 5 cut(s) 216, 333, 1061, 1150, 1172
BsgI GTGCAG 1 cut(s) 53
Bsh1236I CGCG 1 cut(s) 617
BshFI GGCC 5 cut(s) 7, 63, 377, 680, 712
BshNI GGYRCC 1 cut(s) 776
BsiHKAI GWGCWC 1 cut(s) 731
BslFI GGGAC 1 cut(s) 600
BslI CCNNNNNNNGG 2 cut(s) 841, 890
BsmAI GTCTC 1 cut(s) 458
BsmFI GGGAC 1 cut(s) 600
BsnI GGCC 5 cut(s) 7, 63, 377, 680, 712
Bsp1286I GDGCHC 2 cut(s) 507, 731
Bsp1407I TGTACA 1 cut(s) 312
Bsp143I GATC 3 cut(s) 296, 537, 831
BspACI CCGC 3 cut(s) 83, 304, 709
BspANI GGCC 5 cut(s) 7, 63, 377, 680, 712
BspCNI CTCAG 5 cut(s) 268, 446, 465, 995, 1191
BspFNI CGCG 1 cut(s) 617
BspLI GGNNCC 4 cut(s) 264, 778, 833, 907
BspMAI CTGCAG 2 cut(s) 172, 1168
BspPI GGATC 4 cut(s) 304, 545, 826, 839
BspT107I GGYRCC 1 cut(s) 776
BsrGI TGTACA 1 cut(s) 312
BsrI ACTGG 4 cut(s) 549, 588, 736, 906
BssECI CCNNGG 3 cut(s) 21, 772, 884
BssMI GATC 3 cut(s) 296, 537, 831
BssT1I CCWWGG 1 cut(s) 772
Bst2UI CCWGG 2 cut(s) 651, 885
Bst4CI ACNGT 4 cut(s) 872, 966, 1033, 1045
BstAUI TGTACA 1 cut(s) 312
BstBAI YACGTR 1 cut(s) 762
BstC8I GCNNGC 1 cut(s) 519
BstDEI CTNAG 5 cut(s) 276, 433, 473, 982, 1199
BstF5I GGATG 3 cut(s) 656, 753, 988
BstFNI CGCG 1 cut(s) 617
BstHHI GCGC 1 cut(s) 346
BstKTI GATC 3 cut(s) 299, 540, 834
BstMAI GTCTC 1 cut(s) 458
BstMBI GATC 3 cut(s) 296, 537, 831
BstMWI GCNNNNNNNGC 2 cut(s) 1055, 1160
BstNI CCWGG 2 cut(s) 651, 885
BstSCI CCNGG 2 cut(s) 649, 883
BstSFI CTRYAG 3 cut(s) 168, 193, 1164
BstSLI GKGCMC 1 cut(s) 731
BstSNI TACGTA 1 cut(s) 762
BstUI CGCG 1 cut(s) 617
BstV1I GCAGC 5 cut(s) 216, 333, 1061, 1150, 1172
BstX2I RGATCY 3 cut(s) 296, 537, 831
BstYI RGATCY 3 cut(s) 296, 537, 831
BsuI GTATCC 1 cut(s) 125
BsuRI GGCC 5 cut(s) 7, 63, 377, 680, 712
BtrI CACGTC 1 cut(s) 783
BtsCI GGATG 3 cut(s) 656, 753, 988
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 3 cut(s) 204, 729, 899
Cac8I GCNNGC 1 cut(s) 519
CfoI GCGC 1 cut(s) 346
Cfr13I GGNCC 3 cut(s) 61, 653, 906
Csp6I GTAC 2 cut(s) 313, 777
CviAII CATG 6 cut(s) 221, 236, 250, 413, 534, 828
CviQI GTAC 2 cut(s) 313, 777
DdeI CTNAG 5 cut(s) 276, 433, 473, 982, 1199
DpnI GATC 3 cut(s) 298, 539, 833
DpnII GATC 3 cut(s) 296, 537, 831
DrdI GACNNNNNNGTC 1 cut(s) 904
DseDI GACNNNNNNGTC 1 cut(s) 904
Eco105I TACGTA 1 cut(s) 762
Eco130I CCWWGG 1 cut(s) 772
Eco147I AGGCCT 2 cut(s) 7, 680
Eco24I GRGCYC 1 cut(s) 507
Eco47I GGWCC 2 cut(s) 653, 906
Eco57I CTGAAG 1 cut(s) 1116
EcoO109I RGGNCCY 1 cut(s) 61
EcoRII CCWGG 2 cut(s) 649, 883
EcoT14I CCWWGG 1 cut(s) 772
EcoT22I ATGCAT 1 cut(s) 414
EcoT38I GRGCYC 1 cut(s) 507
ErhI CCWWGG 1 cut(s) 772
FaeI CATG 6 cut(s) 224, 239, 253, 416, 537, 831
FaqI GGGAC 1 cut(s) 600
FatI CATG 6 cut(s) 220, 235, 249, 412, 533, 827
FblI GTMKAC 1 cut(s) 192
Fnu4HI GCNGC 6 cut(s) 230, 347, 710, 1050, 1161, 1164
FokI GGATG 3 cut(s) 643, 740, 975
FriOI GRGCYC 1 cut(s) 507
Fsp4HI GCNGC 6 cut(s) 230, 347, 710, 1050, 1161, 1164
FspBI CTAG 4 cut(s) 39, 786, 960, 1157
GlaI GCGC 1 cut(s) 345
GluI GCNGC 6 cut(s) 230, 347, 710, 1050, 1161, 1164
GsuI CTGGAG 1 cut(s) 1074
HaeIII GGCC 5 cut(s) 7, 63, 377, 680, 712
HhaI GCGC 1 cut(s) 346
Hin1II CATG 6 cut(s) 224, 239, 253, 416, 537, 831
Hin6I GCGC 1 cut(s) 344
HinP1I GCGC 1 cut(s) 344
HindIII AAGCTT 1 cut(s) 1112
HinfI GANTC 6 cut(s) 137, 183, 438, 938, 944, 980
HphI GGTGA 2 cut(s) 1064, 1184
Hpy166II GTNNAC 4 cut(s) 193, 479, 729, 1072
Hpy188III TCNNGA 4 cut(s) 180, 435, 801, 1079
Hpy8I GTNNAC 4 cut(s) 193, 479, 729, 1072
HpyAV CCTTC 5 cut(s) 74, 151, 670, 760, 1017
HpyCH4III ACNGT 4 cut(s) 872, 966, 1033, 1045
HpyCH4IV ACGT 2 cut(s) 761, 782
HpyF10VI GCNNNNNNNGC 2 cut(s) 1055, 1160
HpyF3I CTNAG 5 cut(s) 276, 433, 473, 982, 1199
HpySE526I ACGT 2 cut(s) 761, 782
Hsp92II CATG 6 cut(s) 224, 239, 253, 416, 537, 831
HspAI GCGC 1 cut(s) 344
KpnI GGTACC 1 cut(s) 780
Kzo9I GATC 3 cut(s) 296, 537, 831
LmnI GCTCC 2 cut(s) 354, 1055
Lsp1109I GCAGC 5 cut(s) 216, 333, 1061, 1150, 1172
LweI GCATC 2 cut(s) 399, 988
MaeI CTAG 4 cut(s) 39, 786, 960, 1157
MaeII ACGT 2 cut(s) 761, 782
MaeIII GTNAC 3 cut(s) 623, 872, 977
MalI GATC 3 cut(s) 298, 539, 833
MboI GATC 3 cut(s) 296, 537, 831
MboII GAAGA 5 cut(s) 347, 816, 843, 1109, 1112
MflI RGATCY 3 cut(s) 296, 537, 831
MhlI GDGCHC 2 cut(s) 507, 731
MluCI AATT 8 cut(s) 288, 360, 637, 672, 716, 805, 1062, 1194
MlyI GAGTC 2 cut(s) 131, 974
MmeI TCCRAC 3 cut(s) 261, 580, 948
Mph1103I ATGCAT 1 cut(s) 414
MseI TTAA 3 cut(s) 390, 510, 1179
MslI CAYNNNNRTG 3 cut(s) 52, 417, 594
MspA1I CMGCKG 2 cut(s) 1052, 1163
MspR9I CCNGG 2 cut(s) 651, 885
MvaI CCWGG 2 cut(s) 651, 885
MvnI CGCG 1 cut(s) 617
MwoI GCNNNNNNNGC 2 cut(s) 1055, 1160
NdeII GATC 3 cut(s) 296, 537, 831
NlaIII CATG 6 cut(s) 224, 239, 253, 416, 537, 831
NlaIV GGNNCC 4 cut(s) 264, 778, 833, 907
NmuCI GTSAC 2 cut(s) 872, 977
NsiI ATGCAT 1 cut(s) 414
OliI CACNNNNGTG 2 cut(s) 52, 594
PceI AGGCCT 2 cut(s) 7, 680
PfeI GAWTC 4 cut(s) 183, 438, 938, 944
PfoI TCCNGGA 1 cut(s) 649
PkrI GCNGC 6 cut(s) 231, 348, 711, 1051, 1162, 1165
PleI GAGTC 2 cut(s) 131, 974
PpsI GAGTC 2 cut(s) 131, 974
Ppu21I YACGTR 1 cut(s) 762
PshBI ATTAAT 1 cut(s) 1179
Psp6I CCWGG 2 cut(s) 649, 883
PspGI CCWGG 2 cut(s) 649, 883
PspN4I GGNNCC 4 cut(s) 264, 778, 833, 907
PspPI GGNCC 3 cut(s) 61, 653, 906
PstI CTGCAG 2 cut(s) 172, 1168
PsuI RGATCY 3 cut(s) 296, 537, 831
PvuII CAGCTG 2 cut(s) 1052, 1163
RsaI GTAC 2 cut(s) 314, 778
RsaNI GTAC 2 cut(s) 313, 777
RseI CAYNNNNRTG 3 cut(s) 52, 417, 594
SaqAI TTAA 3 cut(s) 390, 510, 1179
SatI GCNGC 6 cut(s) 230, 347, 710, 1050, 1161, 1164
Sau3AI GATC 3 cut(s) 296, 537, 831
Sau96I GGNCC 3 cut(s) 61, 653, 906
SchI GAGTC 2 cut(s) 131, 974
ScrFI CCNGG 2 cut(s) 651, 885
SduI GDGCHC 2 cut(s) 507, 731
SfaNI GCATC 2 cut(s) 399, 988
SfcI CTRYAG 3 cut(s) 168, 193, 1164
SinI GGWCC 2 cut(s) 653, 906
SmiMI CAYNNNNRTG 3 cut(s) 52, 417, 594
SnaBI TACGTA 1 cut(s) 762
Sse9I AATT 8 cut(s) 288, 360, 637, 672, 716, 805, 1062, 1194
SseBI AGGCCT 2 cut(s) 7, 680
SsiI CCGC 3 cut(s) 83, 304, 709
SspMI CTAG 4 cut(s) 39, 786, 960, 1157
StuI AGGCCT 2 cut(s) 7, 680
StyD4I CCNGG 2 cut(s) 649, 883
StyI CCWWGG 1 cut(s) 772
TaaI ACNGT 4 cut(s) 872, 966, 1033, 1045
TaiI ACGT 2 cut(s) 764, 785
TaqI TCGA 1 cut(s) 1191
TasI AATT 8 cut(s) 288, 360, 637, 672, 716, 805, 1062, 1194
TatI WGTACW 1 cut(s) 312
TauI GCSGC 1 cut(s) 712
TfiI GAWTC 4 cut(s) 183, 438, 938, 944
Tru1I TTAA 3 cut(s) 390, 510, 1179
Tru9I TTAA 3 cut(s) 390, 510, 1179
TscAI CASTG 3 cut(s) 211, 736, 906
TseFI GTSAC 2 cut(s) 872, 977
TseI GCWGC 5 cut(s) 229, 346, 1049, 1160, 1163
Tsp45I GTSAC 2 cut(s) 872, 977
TspDTI ATGAA 6 cut(s) 162, 209, 224, 567, 742, 816
TspGWI ACGGA 1 cut(s) 898
TspRI CASTG 3 cut(s) 211, 736, 906
VneI GTGCAC 1 cut(s) 727
VpaK11BI GGWCC 2 cut(s) 653, 906
VspI ATTAAT 1 cut(s) 1179
XapI RAATTY 4 cut(s) 716, 805, 1062, 1194
XmiI GTMKAC 1 cut(s) 192
XspI CTAG 4 cut(s) 39, 786, 960, 1157
Zsp2I ATGCAT 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.