Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8483849.1

Orthogroup ID

OG0000844

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1394

Gene Structure 1394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8483849.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 398 bp

gattcaatgtggagactgtggaatataagaacatcagctttactgtctgggatgttgggggtcaggacaagattcgacccttgtggaggcactatttccaaaacacacaaggacttatctttgtggttgatagcaacgatcgtgaccgtgtagttgaagctagggatgagctgcacagaatgttgaatgaggatgagttgagggaagctgtgctgcttgtatttgctaacaagcaagatcttccaaatgcaatgaatgctgctgaaataactgataagcttggccttcactccctccgtcaacgccactggtatatccagagcacatgtgctacttctggtgaaggactgtatgagggactagactggctctcaaacaacattgcaaacaaggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006471 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0019538 GO:0033036 GO:0034613 GO:0036211 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko05110 ko05134 map04072 map04144 map05110 map05134

Pfam Domains

Protein Families

Arf

Protein Analysis

131

Amino Acids

15.19

Weight (kDa)

5.13

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14670 AT5G14670 AT5G14670
fragaria_vesca	FvH4_1g26580 FvH4_2g05330 FvH4_4g34150 FvH4_6g50940
malus_domestica	MD02G1178300.v1.1 MD05G1087900.v1.1 MD09G1288000.v1.1 MD13G1093800.v1.1 MD16G1095100.v1.1 MD17G1032200.v1.1 MD17G1280300.v1.1
prunus_persica	Prupe.1G251500_v2.0.a1 Prupe.1G251500_v2.0.a1 Prupe.1G251500_v2.0.a1 Prupe.3G005200_v2.0.a1 Prupe.3G005200_v2.0.a1 Prupe.3G005200_v2.0.a1 Prupe.6G229500_v2.0.a1 Prupe.6G229500_v2.0.a1 Prupe.8G134000_v2.0.a1
pyrus_communis	pycom02g14440 pycom05g08740 pycom09g19540 pycom16g08120 pycom17g27820
rosa_chinensis	RchiOBHm_Chr2g0106611 RchiOBHm_Chr2g0172341 RchiOBHm_Chr3g0486681 RchiOBHm_Chr4g0443661 RchiOBHm_Chr6g0255541
rosa_laevigata	RLG00000005904 RLG00000014832 RLG00000017521 RLG00000023067
rosa_multiflora	Rmu_co8483849.1_g000001 Rmu_sc0000261.1_g000013 Rmu_sc0000467.1_g000011 Rmu_sc0001426.1_g000018 Rmu_sc0002360.1_g000004 Rmu_sc0006202.1_g000005 Rmu_sc0006221.1_g000007
rosa_roxburghii	Rroxscaffold_2G00136970 Rroxscaffold_5G00384210 Rroxscaffold_6G00395670 Rroxscaffold_7G00209900
rosa_rugosa	Rorug02G0136700 Rorug02G0136800 Rorug03G0226500 Rorug03G0226600 Rorug03G0226700 Rorug05G0559300
rosa_samantha	Rh2BG198900 Rh2BG647400 Rh2CG614300 Rh2DG194100 Rh2DG662200 Rh4CG431500 Rh6AG077800 Rh6DG065500
rosa_wichuraiana	Rw2G014750 Rw2G052480 Rw3G024590 Rw4G034860 Rw6G006700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	86
AflIII	ACRYGT	1 cut(s)	325
AgsI	TTSAA	3 cut(s)	6, 157, 186
AluBI	AGCT	5 cut(s)	38, 160, 171, 208, 279
AluI	AGCT	5 cut(s)	38, 160, 171, 208, 279
Alw21I	GWGCWC	1 cut(s)	325
Alw26I	GTCTC	1 cut(s)	7
AoxI	GGCC	1 cut(s)	282
ApeKI	GCWGC	3 cut(s)	171, 213, 259
AsuHPI	GGTGA	1 cut(s)	352
Bbv12I	GWGCWC	1 cut(s)	325
BbvI	GCAGC	3 cut(s)	158, 200, 246
BcoDI	GTCTC	1 cut(s)	7
BfaI	CTAG	2 cut(s)	161, 361
BglII	AGATCT	1 cut(s)	237
BisI	GCNGC	3 cut(s)	172, 214, 260
BlsI	GCNGC	3 cut(s)	173, 215, 261
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
Bse1I	ACTGG	2 cut(s)	313, 370
Bse3DI	GCAATG	2 cut(s)	257, 380
BseGI	GGATG	3 cut(s)	57, 171, 198
BseLI	CCNNNNNNNGG	1 cut(s)	86
BseMI	GCAATG	2 cut(s)	257, 380
BseNI	ACTGG	2 cut(s)	313, 370
BseXI	GCAGC	3 cut(s)	158, 200, 246
BsgI	GTGCAG	1 cut(s)	157
Bsh1285I	CGRYCG	1 cut(s)	141
BshFI	GGCC	1 cut(s)	284
BsiEI	CGRYCG	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	325
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	1 cut(s)	86
BsmAI	GTCTC	1 cut(s)	7
BsmFI	GGGAC	1 cut(s)	371
BsmI	GAATGC	1 cut(s)	261
BsnI	GGCC	1 cut(s)	284
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp143I	GATC	2 cut(s)	138, 237
BspANI	GGCC	1 cut(s)	284
BsrDI	GCAATG	2 cut(s)	257, 380
BsrI	ACTGG	2 cut(s)	313, 370
BssMI	GATC	2 cut(s)	138, 237
Bst4CI	ACNGT	4 cut(s)	18, 45, 148, 350
BstAPI	GCANNNNNTGC	1 cut(s)	256
BstDEI	CTNAG	1 cut(s)	395
BstENI	CCTNNNNNAGG	1 cut(s)	84
BstF5I	GGATG	3 cut(s)	57, 171, 198
BstKTI	GATC	2 cut(s)	141, 240
BstMAI	GTCTC	1 cut(s)	7
BstMBI	GATC	2 cut(s)	138, 237
BstMCI	CGRYCG	1 cut(s)	141
BstMWI	GCNNNNNNNGC	2 cut(s)	256, 391
BstNSI	RCATGY	1 cut(s)	329
BstV1I	GCAGC	3 cut(s)	158, 200, 246
BstX2I	RGATCY	1 cut(s)	237
BstYI	RGATCY	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	284
BtsCI	GGATG	3 cut(s)	57, 171, 198
BtsIMutI	CAGTG	1 cut(s)	306
CviAII	CATG	1 cut(s)	326
CviJI	RGCY	8 cut(s)	38, 160, 171, 208, 279, 284, 369, 394
CviKI_1	RGCY	8 cut(s)	38, 160, 171, 208, 279, 284, 369, 394
DdeI	CTNAG	1 cut(s)	395
DpnI	GATC	2 cut(s)	140, 239
DpnII	GATC	2 cut(s)	138, 237
EcoNI	CCTNNNNNAGG	1 cut(s)	84
FaeI	CATG	1 cut(s)	329
FaiI	YATR	4 cut(s)	26, 314, 327, 353
FaqI	GGGAC	1 cut(s)	371
FatI	CATG	1 cut(s)	325
Fnu4HI	GCNGC	3 cut(s)	172, 214, 260
FokI	GGATG	3 cut(s)	64, 178, 205
Fsp4HI	GCNGC	3 cut(s)	172, 214, 260
FspBI	CTAG	2 cut(s)	161, 361
GluI	GCNGC	3 cut(s)	172, 214, 260
HaeIII	GGCC	1 cut(s)	284
Hin1II	CATG	1 cut(s)	329
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HindIII	AAGCTT	1 cut(s)	277
HinfI	GANTC	2 cut(s)	2, 72
HphI	GGTGA	1 cut(s)	352
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188III	TCNNGA	3 cut(s)	64, 142, 318
Hpy8I	GTNNAC	1 cut(s)	301
HpyAV	CCTTC	2 cut(s)	295, 337
HpyCH4III	ACNGT	4 cut(s)	18, 45, 148, 350
HpyCH4V	TGCA	3 cut(s)	174, 250, 385
HpyF10VI	GCNNNNNNNGC	2 cut(s)	256, 391
HpyF3I	CTNAG	1 cut(s)	395
Hsp92II	CATG	1 cut(s)	329
Kzo9I	GATC	2 cut(s)	138, 237
LpnPI	CCDG	6 cut(s)	33, 49, 294, 323, 331, 351
Lsp1109I	GCAGC	3 cut(s)	158, 200, 246
MaeI	CTAG	2 cut(s)	161, 361
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	2 cut(s)	140, 239
MboI	GATC	2 cut(s)	138, 237
MboII	GAAGA	1 cut(s)	232
MflI	RGATCY	1 cut(s)	237
MhlI	GDGCHC	1 cut(s)	325
MnlI	CCTC	5 cut(s)	80, 183, 194, 304, 348
Mva1269I	GAATGC	1 cut(s)	261
MwoI	GCNNNNNNNGC	2 cut(s)	256, 391
NdeII	GATC	2 cut(s)	138, 237
NlaIII	CATG	1 cut(s)	329
NmuCI	GTSAC	1 cut(s)	142
NspI	RCATGY	1 cut(s)	329
PciI	ACATGT	1 cut(s)	325
PctI	GAATGC	1 cut(s)	261
PfeI	GAWTC	2 cut(s)	2, 72
PkrI	GCNGC	3 cut(s)	173, 215, 261
Ple19I	CGATCG	1 cut(s)	141
PscI	ACATGT	1 cut(s)	325
PsuI	RGATCY	1 cut(s)	237
PvuI	CGATCG	1 cut(s)	141
SatI	GCNGC	3 cut(s)	172, 214, 260
Sau3AI	GATC	2 cut(s)	138, 237
SduI	GDGCHC	1 cut(s)	325
SetI	ASST	5 cut(s)	40, 162, 173, 210, 281
SspMI	CTAG	2 cut(s)	161, 361
TaaI	ACNGT	4 cut(s)	18, 45, 148, 350
TaqI	TCGA	1 cut(s)	75
TfiI	GAWTC	2 cut(s)	2, 72
TscAI	CASTG	1 cut(s)	313
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	3 cut(s)	171, 213, 259
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	1 cut(s)	268
TspGWI	ACGGA	1 cut(s)	286
TspRI	CASTG	1 cut(s)	313
XagI	CCTNNNNNAGG	1 cut(s)	84
XceI	RCATGY	1 cut(s)	329
XspI	CTAG	2 cut(s)	161, 361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.