Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000844

Physical Location & Seq

Genomic Coordinates Reverse (-)

2672083 .. 2674214

Gene Structure 2132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005904

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGACATTTCTGCATCTGTTTGGTGTCCGATCTGTTCGATCCGTTGATATTGATGGCTTCATTGTTGTTAATTGTGTGATTTCGGTGGGTAATGTGCAGGGATCCGCAGTCGGAATGGGGCTCACGTTCACAAAGCTTTTCAGCCGGCTTTTTGCCAAGAAAGAGATGCGAATTCTGATGGTCGGTCTCGATGCCGCTGGTAAGACCACCATTCTCTACAAGCTCAAGCTCGGTGAGATCGTCACAACAATTCCTACTATTGGATTTAATGTTGAGACCGTGGAATACAAGAACATCAGCTTCACAGTCTGGGATGTCGGGGGTCAGGACAAGATCCGACCTTTGTGGAGGCACTACTTCCAGAACACACAGGGTCTTATATTTGTTGTGGACAGCAATGACAGAGACCGTGTTGTTGAGGCAAGGGATGAATTGCACAGGATGTTGAATGAGGATGAGCTGCGAGAAGCTGTGTTGCTTGTTTTTGCCAACAAACAGGATCTCCCCAATGCAATGAATGCTGCTGAAATTACCGATAAGCTTGGCCTCCACTCTCTCCGACAGCGTCACTGGTACATCCAGAGCACTTGTGCAACCTCTGGAGAGGGTCTATATGAAGGCCTGGAGTGGCTCTCCAACAACATTGCTAACAAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006471 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0019538 GO:0033036 GO:0034613 GO:0036211 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko05110 ko05134 map04072 map04144 map05110 map05134

Pfam Domains

Protein Families

Arf

Protein Analysis

220

Amino Acids

24.7

Weight (kDa)

6.52

Isoelectric Point (pI)

30.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	43 - 215	3e-81	ADP-ribosylation factor family
SRPRB	PF09439	54 - 181	1e-12	Signal recognition particle receptor beta subunit
Roc	PF08477	57 - 167	1.4e-13	Ras of Complex, Roc, domain of DAPkinase
Ras	PF00071	57 - 214	8e-12	Ras family
Gtr1_RagA	PF04670	57 - 179	2.9e-09	Gtr1/RagA G protein conserved region
G-alpha	PF00503	83 - 149	1.1e-09	G-protein alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14670 AT5G14670 AT5G14670
fragaria_vesca	FvH4_1g26580 FvH4_2g05330 FvH4_4g34150 FvH4_6g50940
malus_domestica	MD02G1178300.v1.1 MD05G1087900.v1.1 MD09G1288000.v1.1 MD13G1093800.v1.1 MD16G1095100.v1.1 MD17G1032200.v1.1 MD17G1280300.v1.1
prunus_persica	Prupe.1G251500_v2.0.a1 Prupe.1G251500_v2.0.a1 Prupe.1G251500_v2.0.a1 Prupe.3G005200_v2.0.a1 Prupe.3G005200_v2.0.a1 Prupe.3G005200_v2.0.a1 Prupe.6G229500_v2.0.a1 Prupe.6G229500_v2.0.a1 Prupe.8G134000_v2.0.a1
pyrus_communis	pycom02g14440 pycom05g08740 pycom09g19540 pycom16g08120 pycom17g27820
rosa_chinensis	RchiOBHm_Chr2g0106611 RchiOBHm_Chr2g0172341 RchiOBHm_Chr3g0486681 RchiOBHm_Chr4g0443661 RchiOBHm_Chr6g0255541
rosa_laevigata	RLG00000005904 RLG00000014832 RLG00000017521 RLG00000023067
rosa_multiflora	Rmu_co8483849.1_g000001 Rmu_sc0000261.1_g000013 Rmu_sc0000467.1_g000011 Rmu_sc0001426.1_g000018 Rmu_sc0002360.1_g000004 Rmu_sc0006202.1_g000005 Rmu_sc0006221.1_g000007
rosa_roxburghii	Rroxscaffold_2G00136970 Rroxscaffold_5G00384210 Rroxscaffold_6G00395670 Rroxscaffold_7G00209900
rosa_rugosa	Rorug02G0136700 Rorug02G0136800 Rorug03G0226500 Rorug03G0226600 Rorug03G0226700 Rorug05G0559300
rosa_samantha	Rh2BG198900 Rh2BG647400 Rh2CG614300 Rh2DG194100 Rh2DG662200 Rh4CG431500 Rh6AG077800 Rh6DG065500
rosa_wichuraiana	Rw2G014750 Rw2G052480 Rw3G024590 Rw4G034860 Rw6G006700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	105, 195
AclWI	GGATC	5 cut(s)	33, 96, 109, 328, 507
AcsI	RAATTY	1 cut(s)	171
AfaI	GTAC	1 cut(s)	575
AfiI	CCNNNNNNNGG	1 cut(s)	260
AgsI	TTSAA	1 cut(s)	448
AjnI	CCWGG	1 cut(s)	621
AluBI	AGCT	7 cut(s)	136, 223, 229, 300, 460, 470, 541
AluI	AGCT	7 cut(s)	136, 223, 229, 300, 460, 470, 541
Alw21I	GWGCWC	1 cut(s)	587
Alw26I	GTCTC	3 cut(s)	191, 269, 399
AlwI	GGATC	5 cut(s)	33, 96, 109, 328, 507
AoxI	GGCC	2 cut(s)	544, 619
ApeKI	GCWGC	2 cut(s)	460, 521
ApoI	RAATTY	1 cut(s)	171
AsuHPI	GGTGA	1 cut(s)	245
BamHI	GGATCC	1 cut(s)	101
BanII	GRGCYC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	587
BbvI	GCAGC	2 cut(s)	447, 508
BccI	CCATC	2 cut(s)	47, 172
BciT130I	CCWGG	1 cut(s)	623
BcoDI	GTCTC	3 cut(s)	191, 269, 399
BisI	GCNGC	3 cut(s)	195, 461, 522
BlsI	GCNGC	3 cut(s)	196, 462, 523
Bme1390I	CCNGG	1 cut(s)	623
BmiI	GGNNCC	1 cut(s)	103
BmrFI	CCNGG	1 cut(s)	623
BmsI	GCATC	3 cut(s)	22, 156, 181
BplI	GAGNNNNNCTC	2 cut(s)	617, 649
BpmI	CTGGAG	2 cut(s)	621, 644
BpuEI	CTTGAG	1 cut(s)	209
BsaI	GGTCTC	3 cut(s)	191, 269, 399
BsaJI	CCNNGG	1 cut(s)	279
BsaXI	ACNNNNNCTCC	2 cut(s)	486, 516
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
Bse118I	RCCGGY	1 cut(s)	144
Bse1I	ACTGG	1 cut(s)	575
Bse3DI	GCAATG	3 cut(s)	403, 519, 642
BseBI	CCWGG	1 cut(s)	623
BseDI	CCNNGG	1 cut(s)	279
BseGI	GGATG	5 cut(s)	319, 433, 447, 460, 576
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseMI	GCAATG	3 cut(s)	403, 519, 642
BseNI	ACTGG	1 cut(s)	575
BseXI	GCAGC	2 cut(s)	447, 508
BsgI	GTGCAG	1 cut(s)	116
BshFI	GGCC	2 cut(s)	546, 621
BsiHKAI	GWGCWC	1 cut(s)	587
BsiSI	CCGG	1 cut(s)	145
BslI	CCNNNNNNNGG	1 cut(s)	260
BsmAI	GTCTC	3 cut(s)	191, 269, 399
BsmI	GAATGC	1 cut(s)	523
BsnI	GGCC	2 cut(s)	546, 621
Bso31I	GGTCTC	3 cut(s)	191, 269, 399
Bsp1286I	GDGCHC	2 cut(s)	123, 587
Bsp143I	GATC	6 cut(s)	29, 38, 101, 237, 333, 499
BspACI	CCGC	2 cut(s)	105, 195
BspANI	GGCC	2 cut(s)	546, 621
BspLI	GGNNCC	1 cut(s)	103
BspPI	GGATC	5 cut(s)	33, 96, 109, 328, 507
BspTNI	GGTCTC	3 cut(s)	191, 269, 399
BsrDI	GCAATG	3 cut(s)	403, 519, 642
BsrFI	RCCGGY	1 cut(s)	144
BsrI	ACTGG	1 cut(s)	575
BssAI	RCCGGY	1 cut(s)	144
BssECI	CCNNGG	1 cut(s)	279
BssMI	GATC	6 cut(s)	29, 38, 101, 237, 333, 499
Bst2UI	CCWGG	1 cut(s)	623
Bst4CI	ACNGT	3 cut(s)	280, 307, 410
BstAPI	GCANNNNNTGC	1 cut(s)	518
BstC8I	GCNNGC	1 cut(s)	146
BstDSI	CCRYGG	1 cut(s)	279
BstF5I	GGATG	5 cut(s)	319, 433, 447, 460, 576
BstKTI	GATC	6 cut(s)	32, 41, 104, 240, 336, 502
BstMAI	GTCTC	3 cut(s)	191, 269, 399
BstMBI	GATC	6 cut(s)	29, 38, 101, 237, 333, 499
BstMWI	GCNNNNNNNGC	2 cut(s)	518, 653
BstNI	CCWGG	1 cut(s)	623
BstSCI	CCNGG	1 cut(s)	621
BstV1I	GCAGC	2 cut(s)	447, 508
BstX2I	RGATCY	3 cut(s)	101, 333, 499
BstYI	RGATCY	3 cut(s)	101, 333, 499
BsuRI	GGCC	2 cut(s)	546, 621
BtgI	CCRYGG	1 cut(s)	279
BtsCI	GGATG	5 cut(s)	319, 433, 447, 460, 576
BtsIMutI	CAGTG	1 cut(s)	568
Cac8I	GCNNGC	1 cut(s)	146
Cfr10I	RCCGGY	1 cut(s)	144
CseI	GACGC	1 cut(s)	554
Csp6I	GTAC	1 cut(s)	574
CviQI	GTAC	1 cut(s)	574
DpnI	GATC	6 cut(s)	31, 40, 103, 239, 335, 501
DpnII	GATC	6 cut(s)	29, 38, 101, 237, 333, 499
Eco147I	AGGCCT	1 cut(s)	621
Eco24I	GRGCYC	1 cut(s)	123
Eco31I	GGTCTC	3 cut(s)	191, 269, 399
EcoRI	GAATTC	1 cut(s)	171
EcoRII	CCWGG	1 cut(s)	621
EcoT38I	GRGCYC	1 cut(s)	123
FaiI	YATR	3 cut(s)	380, 613, 615
Fnu4HI	GCNGC	3 cut(s)	195, 461, 522
FokI	GGATG	5 cut(s)	326, 440, 454, 467, 563
FriOI	GRGCYC	1 cut(s)	123
Fsp4HI	GCNGC	3 cut(s)	195, 461, 522
GluI	GCNGC	3 cut(s)	195, 461, 522
GsuI	CTGGAG	2 cut(s)	621, 644
HaeIII	GGCC	2 cut(s)	546, 621
HapII	CCGG	1 cut(s)	145
HgaI	GACGC	1 cut(s)	554
HindIII	AAGCTT	2 cut(s)	134, 539
HpaII	CCGG	1 cut(s)	145
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	2 cut(s)	129, 391
Hpy188I	TCNGA	5 cut(s)	29, 113, 177, 338, 560
Hpy188III	TCNNGA	5 cut(s)	188, 326, 361, 580, 600
Hpy8I	GTNNAC	2 cut(s)	129, 391
HpyAV	CCTTC	1 cut(s)	611
HpyCH4III	ACNGT	3 cut(s)	280, 307, 410
HpyCH4IV	ACGT	1 cut(s)	125
HpyCH4V	TGCA	5 cut(s)	13, 97, 436, 512, 593
HpyF10VI	GCNNNNNNNGC	2 cut(s)	518, 653
HpySE526I	ACGT	1 cut(s)	125
KroI	GCCGGC	1 cut(s)	144
KroNI	GCCGGC	1 cut(s)	146
Kzo9I	GATC	6 cut(s)	29, 38, 101, 237, 333, 499
Lsp1109I	GCAGC	2 cut(s)	447, 508
LweI	GCATC	3 cut(s)	22, 156, 181
MaeII	ACGT	1 cut(s)	125
MaeIII	GTNAC	2 cut(s)	241, 566
MalI	GATC	6 cut(s)	31, 40, 103, 239, 335, 501
MboI	GATC	6 cut(s)	29, 38, 101, 237, 333, 499
MflI	RGATCY	3 cut(s)	101, 333, 499
MhlI	GDGCHC	2 cut(s)	123, 587
MluCI	AATT	5 cut(s)	70, 171, 249, 431, 528
MmeI	TCCRAC	4 cut(s)	91, 361, 583, 660
MnlI	CCTC	6 cut(s)	342, 412, 445, 557, 598, 607
MroNI	GCCGGC	1 cut(s)	144
MseI	TTAA	2 cut(s)	69, 267
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	1 cut(s)	145
MspR9I	CCNGG	1 cut(s)	623
Mva1269I	GAATGC	1 cut(s)	523
MvaI	CCWGG	1 cut(s)	623
MwoI	GCNNNNNNNGC	2 cut(s)	518, 653
NaeI	GCCGGC	1 cut(s)	146
NdeII	GATC	6 cut(s)	29, 38, 101, 237, 333, 499
NgoMIV	GCCGGC	1 cut(s)	144
NlaIV	GGNNCC	1 cut(s)	103
NmuCI	GTSAC	2 cut(s)	241, 566
PceI	AGGCCT	1 cut(s)	621
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PctI	GAATGC	1 cut(s)	523
PdiI	GCCGGC	1 cut(s)	146
PflFI	GACNNNGTC	1 cut(s)	564
PkrI	GCNGC	3 cut(s)	196, 462, 523
Psp6I	CCWGG	1 cut(s)	621
PspGI	CCWGG	1 cut(s)	621
PspN4I	GGNNCC	1 cut(s)	103
PsuI	RGATCY	3 cut(s)	101, 333, 499
PsyI	GACNNNGTC	1 cut(s)	564
RsaI	GTAC	1 cut(s)	575
RsaNI	GTAC	1 cut(s)	574
SaqAI	TTAA	2 cut(s)	69, 267
SatI	GCNGC	3 cut(s)	195, 461, 522
Sau3AI	GATC	6 cut(s)	29, 38, 101, 237, 333, 499
ScrFI	CCNGG	1 cut(s)	623
SduI	GDGCHC	2 cut(s)	123, 587
SfaNI	GCATC	3 cut(s)	22, 156, 181
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	5 cut(s)	70, 171, 249, 431, 528
SseBI	AGGCCT	1 cut(s)	621
SsiI	CCGC	2 cut(s)	105, 195
StuI	AGGCCT	1 cut(s)	621
StyD4I	CCNGG	1 cut(s)	621
TaaI	ACNGT	3 cut(s)	280, 307, 410
TaiI	ACGT	1 cut(s)	128
TaqI	TCGA	2 cut(s)	37, 189
TaqII	GACCGA	1 cut(s)	173
TasI	AATT	5 cut(s)	70, 171, 249, 431, 528
TauI	GCSGC	1 cut(s)	197
Tru1I	TTAA	2 cut(s)	69, 267
Tru9I	TTAA	2 cut(s)	69, 267
TscAI	CASTG	1 cut(s)	575
TseFI	GTSAC	2 cut(s)	241, 566
TseI	GCWGC	2 cut(s)	460, 521
Tsp45I	GTSAC	2 cut(s)	241, 566
TspDTI	ATGAA	4 cut(s)	49, 444, 530, 630
TspGWI	ACGGA	1 cut(s)	31
TspRI	CASTG	1 cut(s)	575
Tth111I	GACNNNGTC	1 cut(s)	564
XapI	RAATTY	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.