Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000844

Physical Location & Seq

Genomic Coordinates Forward (+)

20830199 .. 20831807

Gene Structure 1609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0226600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGAGACCACATACGCAGCTCCCGGTACCACAGTGCAGACGACCCCATTGGTGCACGTTGGGGATGAGGGACTGAGAAGAACGAAGATGAGGGTGATGGTCGCCATCGACGAAAGCGACTCGAGCTTCTACGCGCTCAACTGGGCGCTTGACCACCTCTTTATCAACACGCCGAGTACTCTGGAAGGCGGCGAGGGGGAAGTGGGGATGGTGACGGTGGTCCACATCACGCAGCCGTTTCAGCACTTTGTGTACCCTGCCGGACCTGGCGGAGCAACCTATTATGCATCCGCGTCGGTGGTGGAGTCGGTGAAGAAAGCTCAGCAGGAGAATTCTGCTGCCATTCTCTCCCGCGCTATGCAGATTTGCAAGGATAGGATGATCAAAGCAGAAACTCTGACTCTGACTGGAGATCCAAAGGACATGATTTGTCAAGCCACAGAGCAGATGCATGTAGATCTTCTTGTTGTGGGTAGTCGTGGCCTGGGCATGGTCAAGAGAGCATTCCTAGGAAGTGTGAGCGACTACTGCGCACATCATGCAGCATGTCCAGTCATGATTGTAAAGCCACCAAGGGGGTCTGGAGCAAAGGGGTCTGCATCATCTAAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006471 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0019538 GO:0033036 GO:0034613 GO:0036211 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko05110 ko05134 map04072 map04144 map05110 map05134

Pfam Domains

Protein Families

Arf

Protein Analysis

204

Amino Acids

21.82

Weight (kDa)

7.05

Isoelectric Point (pI)

37.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Usp	PF00582	31 - 189	3e-27	Universal stress protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14670 AT5G14670 AT5G14670
fragaria_vesca	FvH4_1g26580 FvH4_2g05330 FvH4_4g34150 FvH4_6g50940
malus_domestica	MD02G1178300.v1.1 MD05G1087900.v1.1 MD09G1288000.v1.1 MD13G1093800.v1.1 MD16G1095100.v1.1 MD17G1032200.v1.1 MD17G1280300.v1.1
prunus_persica	Prupe.1G251500_v2.0.a1 Prupe.1G251500_v2.0.a1 Prupe.1G251500_v2.0.a1 Prupe.3G005200_v2.0.a1 Prupe.3G005200_v2.0.a1 Prupe.3G005200_v2.0.a1 Prupe.6G229500_v2.0.a1 Prupe.6G229500_v2.0.a1 Prupe.8G134000_v2.0.a1
pyrus_communis	pycom02g14440 pycom05g08740 pycom09g19540 pycom16g08120 pycom17g27820
rosa_chinensis	RchiOBHm_Chr2g0106611 RchiOBHm_Chr2g0172341 RchiOBHm_Chr3g0486681 RchiOBHm_Chr4g0443661 RchiOBHm_Chr6g0255541
rosa_laevigata	RLG00000005904 RLG00000014832 RLG00000017521 RLG00000023067
rosa_multiflora	Rmu_co8483849.1_g000001 Rmu_sc0000261.1_g000013 Rmu_sc0000467.1_g000011 Rmu_sc0001426.1_g000018 Rmu_sc0002360.1_g000004 Rmu_sc0006202.1_g000005 Rmu_sc0006221.1_g000007
rosa_roxburghii	Rroxscaffold_2G00136970 Rroxscaffold_5G00384210 Rroxscaffold_6G00395670 Rroxscaffold_7G00209900
rosa_rugosa	Rorug02G0136700 Rorug02G0136800 Rorug03G0226500 Rorug03G0226600 Rorug03G0226700 Rorug05G0559300
rosa_samantha	Rh2BG198900 Rh2BG647400 Rh2CG614300 Rh2DG194100 Rh2DG662200 Rh4CG431500 Rh6AG077800 Rh6DG065500
rosa_wichuraiana	Rw2G014750 Rw2G052480 Rw3G024590 Rw4G034860 Rw6G006700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	532
Acc65I	GGTACC	1 cut(s)	26
AccB1I	GGYRCC	1 cut(s)	26
AccII	CGCG	3 cut(s)	134, 293, 354
AciI	CCGC	4 cut(s)	189, 270, 291, 352
AclWI	GGATC	1 cut(s)	407
AcsI	RAATTY	1 cut(s)	331
AdeI	CACNNNGTG	1 cut(s)	250
AfaI	GTAC	3 cut(s)	28, 178, 254
AfiI	CCNNNNNNNGG	2 cut(s)	490, 575
AjnI	CCWGG	2 cut(s)	265, 483
AluBI	AGCT	3 cut(s)	20, 126, 320
AluI	AGCT	3 cut(s)	20, 126, 320
Alw21I	GWGCWC	1 cut(s)	57
Alw44I	GTGCAC	1 cut(s)	53
AlwI	GGATC	1 cut(s)	407
Ama87I	CYCGRG	1 cut(s)	121
AoxI	GGCC	1 cut(s)	481
ApaLI	GTGCAC	1 cut(s)	53
ApeKI	GCWGC	4 cut(s)	17, 232, 338, 542
ApoI	RAATTY	1 cut(s)	331
Asp718I	GGTACC	1 cut(s)	26
AspA2I	CCTAGG	1 cut(s)	508
AspLEI	GCGC	4 cut(s)	136, 148, 356, 533
AspS9I	GGNCC	2 cut(s)	220, 263
AsuC2I	CCSGG	1 cut(s)	24
AsuHPI	GGTGA	3 cut(s)	106, 223, 322
AvaI	CYCGRG	1 cut(s)	121
AvaII	GGWCC	2 cut(s)	220, 263
AvrII	CCTAGG	1 cut(s)	508
BaeGI	GKGCMC	1 cut(s)	57
BaeI	ACNNNNGTAYC	2 cut(s)	18, 51
BanI	GGYRCC	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	57
BbvI	GCAGC	4 cut(s)	29, 244, 325, 554
BccI	CCATC	3 cut(s)	91, 113, 202
BceAI	ACGGC	1 cut(s)	220
BcgI	CGANNNNNNTGC	2 cut(s)	276, 310
BciT130I	CCWGG	2 cut(s)	267, 485
BclI	TGATCA	1 cut(s)	381
BcnI	CCSGG	1 cut(s)	24
BfaI	CTAG	1 cut(s)	509
BfoI	RGCGCY	1 cut(s)	149
BglII	AGATCT	1 cut(s)	457
BisI	GCNGC	5 cut(s)	18, 190, 233, 339, 543
BlnI	CCTAGG	1 cut(s)	508
BlpI	GCTNAGC	1 cut(s)	321
BlsI	GCNGC	5 cut(s)	19, 191, 234, 340, 544
BmcAI	AGTACT	1 cut(s)	178
Bme1390I	CCNGG	3 cut(s)	24, 267, 485
Bme18I	GGWCC	2 cut(s)	220, 263
BmeT110I	CYCGRG	1 cut(s)	121
BmgT120I	GGNCC	2 cut(s)	220, 263
BmiI	GGNNCC	1 cut(s)	28
BmrFI	CCNGG	3 cut(s)	24, 267, 485
BmrI	ACTGGG	1 cut(s)	151
BmsI	GCATC	3 cut(s)	296, 438, 608
BmuI	ACTGGG	1 cut(s)	151
BoxI	GACNNNNGTC	1 cut(s)	218
BpmI	CTGGAG	2 cut(s)	429, 603
Bpu1102I	GCTNAGC	1 cut(s)	321
BpuMI	CCSGG	1 cut(s)	24
BsaJI	CCNNGG	3 cut(s)	484, 508, 572
Bsc4I	CCNNNNNNNGG	2 cut(s)	490, 575
Bse1I	ACTGG	3 cut(s)	146, 412, 551
BseBI	CCWGG	2 cut(s)	267, 485
BseDI	CCNNGG	3 cut(s)	484, 508, 572
BseGI	GGATG	4 cut(s)	70, 213, 287, 384
BseLI	CCNNNNNNNGG	2 cut(s)	490, 575
BseMII	CTCAG	2 cut(s)	65, 335
BseNI	ACTGG	3 cut(s)	146, 412, 551
BseSI	GKGCMC	1 cut(s)	57
BseXI	GCAGC	4 cut(s)	29, 244, 325, 554
BsgI	GTGCAG	1 cut(s)	56
Bsh1236I	CGCG	3 cut(s)	134, 293, 354
BshFI	GGCC	1 cut(s)	483
BshNI	GGYRCC	1 cut(s)	26
BsiHKAI	GWGCWC	1 cut(s)	57
BsiHKCI	CYCGRG	1 cut(s)	121
BsiSI	CCGG	2 cut(s)	24, 261
BslFI	GGGAC	1 cut(s)	84
BslI	CCNNNNNNNGG	2 cut(s)	490, 575
BsmFI	GGGAC	1 cut(s)	84
BsmI	GAATGC	1 cut(s)	503
BsnI	GGCC	1 cut(s)	483
BsoBI	CYCGRG	1 cut(s)	121
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	3 cut(s)	381, 412, 457
Bsp1720I	GCTNAGC	1 cut(s)	321
BspACI	CCGC	4 cut(s)	189, 270, 291, 352
BspANI	GGCC	1 cut(s)	483
BspCNI	CTCAG	2 cut(s)	66, 334
BspFNI	CGCG	3 cut(s)	134, 293, 354
BspHI	TCATGA	1 cut(s)	555
BspLI	GGNNCC	1 cut(s)	28
BspPI	GGATC	1 cut(s)	407
BspT107I	GGYRCC	1 cut(s)	26
BsrI	ACTGG	3 cut(s)	146, 412, 551
BssECI	CCNNGG	3 cut(s)	484, 508, 572
BssMI	GATC	3 cut(s)	381, 412, 457
BssT1I	CCWWGG	2 cut(s)	508, 572
Bst2UI	CCWGG	2 cut(s)	267, 485
Bst4CI	ACNGT	2 cut(s)	34, 217
BstAPI	GCANNNNNTGC	1 cut(s)	539
BstDEI	CTNAG	2 cut(s)	74, 321
BstF5I	GGATG	4 cut(s)	70, 213, 287, 384
BstFNI	CGCG	3 cut(s)	134, 293, 354
BstH2I	RGCGCY	1 cut(s)	149
BstHHI	GCGC	4 cut(s)	136, 148, 356, 533
BstKTI	GATC	3 cut(s)	384, 415, 460
BstMBI	GATC	3 cut(s)	381, 412, 457
BstMWI	GCNNNNNNNGC	4 cut(s)	123, 241, 528, 539
BstNI	CCWGG	2 cut(s)	267, 485
BstNSI	RCATGY	2 cut(s)	455, 549
BstPAI	GACNNNNGTC	1 cut(s)	218
BstSCI	CCNGG	3 cut(s)	22, 265, 483
BstSLI	GKGCMC	1 cut(s)	57
BstUI	CGCG	3 cut(s)	134, 293, 354
BstV1I	GCAGC	4 cut(s)	29, 244, 325, 554
BstX2I	RGATCY	2 cut(s)	412, 457
BstYI	RGATCY	2 cut(s)	412, 457
BsuRI	GGCC	1 cut(s)	483
BtsCI	GGATG	4 cut(s)	70, 213, 287, 384
BtsIMutI	CAGTG	1 cut(s)	39
CciI	TCATGA	1 cut(s)	555
CfoI	GCGC	4 cut(s)	136, 148, 356, 533
Cfr13I	GGNCC	2 cut(s)	220, 263
CseI	GACGC	1 cut(s)	282
Csp6I	GTAC	3 cut(s)	27, 177, 253
CviAII	CATG	6 cut(s)	424, 452, 490, 539, 546, 556
CviJI	RGCY	7 cut(s)	20, 126, 235, 320, 437, 483, 568
CviKI_1	RGCY	7 cut(s)	20, 126, 235, 320, 437, 483, 568
CviQI	GTAC	3 cut(s)	27, 177, 253
DdeI	CTNAG	2 cut(s)	74, 321
DpnI	GATC	3 cut(s)	383, 414, 459
DpnII	GATC	3 cut(s)	381, 412, 457
DraIII	CACNNNGTG	1 cut(s)	250
EciI	GGCGGA	1 cut(s)	285
Eco130I	CCWWGG	2 cut(s)	508, 572
Eco47I	GGWCC	2 cut(s)	220, 263
Eco88I	CYCGRG	1 cut(s)	121
EcoRI	GAATTC	1 cut(s)	331
EcoRII	CCWGG	2 cut(s)	265, 483
EcoT14I	CCWWGG	2 cut(s)	508, 572
EcoT22I	ATGCAT	2 cut(s)	289, 453
ErhI	CCWWGG	2 cut(s)	508, 572
FaeI	CATG	6 cut(s)	427, 455, 493, 542, 549, 559
FaiI	YATR	9 cut(s)	13, 285, 359, 425, 453, 491, 540, 547, 557
FaqI	GGGAC	1 cut(s)	84
FatI	CATG	6 cut(s)	423, 451, 489, 538, 545, 555
FauI	CCCGC	1 cut(s)	359
FbaI	TGATCA	1 cut(s)	381
Fnu4HI	GCNGC	5 cut(s)	18, 190, 233, 339, 543
FokI	GGATG	4 cut(s)	77, 220, 274, 391
Fsp4HI	GCNGC	5 cut(s)	18, 190, 233, 339, 543
FspBI	CTAG	1 cut(s)	509
FspI	TGCGCA	1 cut(s)	532
GlaI	GCGC	4 cut(s)	135, 147, 355, 532
GluI	GCNGC	5 cut(s)	18, 190, 233, 339, 543
GsuI	CTGGAG	2 cut(s)	429, 603
HaeII	RGCGCY	1 cut(s)	149
HaeIII	GGCC	1 cut(s)	483
HapII	CCGG	2 cut(s)	24, 261
HgaI	GACGC	1 cut(s)	282
HhaI	GCGC	4 cut(s)	136, 148, 356, 533
Hin1II	CATG	6 cut(s)	427, 455, 493, 542, 549, 559
Hin6I	GCGC	4 cut(s)	134, 146, 354, 531
HinP1I	GCGC	4 cut(s)	134, 146, 354, 531
HinfI	GANTC	3 cut(s)	119, 305, 400
HpaII	CCGG	2 cut(s)	24, 261
HphI	GGTGA	3 cut(s)	106, 223, 322
Hpy166II	GTNNAC	3 cut(s)	55, 223, 253
Hpy188I	TCNGA	2 cut(s)	399, 405
Hpy188III	TCNNGA	4 cut(s)	182, 496, 556, 582
Hpy8I	GTNNAC	3 cut(s)	55, 223, 253
Hpy99I	CGWCG	2 cut(s)	113, 298
HpyAV	CCTTC	1 cut(s)	179
HpyCH4III	ACNGT	2 cut(s)	34, 217
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	8 cut(s)	37, 55, 287, 361, 369, 451, 542, 599
HpyF10VI	GCNNNNNNNGC	4 cut(s)	123, 241, 528, 539
HpyF3I	CTNAG	2 cut(s)	74, 321
HpySE526I	ACGT	1 cut(s)	57
Hsp92II	CATG	6 cut(s)	427, 455, 493, 542, 549, 559
HspAI	GCGC	4 cut(s)	134, 146, 354, 531
KpnI	GGTACC	1 cut(s)	30
Ksp22I	TGATCA	1 cut(s)	381
Kzo9I	GATC	3 cut(s)	381, 412, 457
LmnI	GCTCC	3 cut(s)	25, 272, 584
Lsp1109I	GCAGC	4 cut(s)	29, 244, 325, 554
LweI	GCATC	3 cut(s)	296, 438, 608
MaeI	CTAG	1 cut(s)	509
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	3 cut(s)	383, 414, 459
MboI	GATC	3 cut(s)	381, 412, 457
MboII	GAAGA	4 cut(s)	90, 97, 325, 452
MflI	RGATCY	2 cut(s)	412, 457
MhlI	GDGCHC	1 cut(s)	57
MluCI	AATT	1 cut(s)	331
MlyI	GAGTC	3 cut(s)	113, 314, 394
MnlI	CCTC	4 cut(s)	61, 84, 167, 187
Mph1103I	ATGCAT	2 cut(s)	289, 453
MspI	CCGG	2 cut(s)	24, 261
MspR9I	CCNGG	3 cut(s)	24, 267, 485
Mva1269I	GAATGC	1 cut(s)	503
MvaI	CCWGG	2 cut(s)	267, 485
MvnI	CGCG	3 cut(s)	134, 293, 354
MwoI	GCNNNNNNNGC	4 cut(s)	123, 241, 528, 539
NciI	CCSGG	1 cut(s)	24
NdeII	GATC	3 cut(s)	381, 412, 457
NlaIII	CATG	6 cut(s)	427, 455, 493, 542, 549, 559
NlaIV	GGNNCC	1 cut(s)	28
NmeAIII	GCCGAG	1 cut(s)	198
NmuCI	GTSAC	1 cut(s)	211
NsbI	TGCGCA	1 cut(s)	532
NsiI	ATGCAT	2 cut(s)	289, 453
NspI	RCATGY	2 cut(s)	455, 549
PaeR7I	CTCGAG	1 cut(s)	121
PagI	TCATGA	1 cut(s)	555
PcsI	WCGNNNNNNNCGW	2 cut(s)	108, 114
PctI	GAATGC	1 cut(s)	503
PkrI	GCNGC	5 cut(s)	19, 191, 234, 340, 544
PleI	GAGTC	3 cut(s)	113, 313, 394
PpsI	GAGTC	3 cut(s)	113, 313, 394
PshAI	GACNNNNGTC	1 cut(s)	218
Psp6I	CCWGG	2 cut(s)	265, 483
PspGI	CCWGG	2 cut(s)	265, 483
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	2 cut(s)	220, 263
PspXI	VCTCGAGB	1 cut(s)	121
PsuI	RGATCY	2 cut(s)	412, 457
RsaI	GTAC	3 cut(s)	28, 178, 254
RsaNI	GTAC	3 cut(s)	27, 177, 253
SatI	GCNGC	5 cut(s)	18, 190, 233, 339, 543
Sau3AI	GATC	3 cut(s)	381, 412, 457
Sau96I	GGNCC	2 cut(s)	220, 263
ScaI	AGTACT	1 cut(s)	178
SchI	GAGTC	3 cut(s)	113, 314, 394
ScrFI	CCNGG	3 cut(s)	24, 267, 485
SduI	GDGCHC	1 cut(s)	57
SetI	ASST	7 cut(s)	22, 60, 128, 159, 268, 281, 322
SfaNI	GCATC	3 cut(s)	296, 438, 608
Sfr274I	CTCGAG	1 cut(s)	121
SinI	GGWCC	2 cut(s)	220, 263
SlaI	CTCGAG	1 cut(s)	121
SmlI	CTYRAG	1 cut(s)	121
SmoI	CTYRAG	1 cut(s)	121
Sse9I	AATT	1 cut(s)	331
SsiI	CCGC	4 cut(s)	189, 270, 291, 352
SspMI	CTAG	1 cut(s)	509
StyD4I	CCNGG	3 cut(s)	22, 265, 483
StyI	CCWWGG	2 cut(s)	508, 572
TaaI	ACNGT	2 cut(s)	34, 217
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	2 cut(s)	108, 122
TasI	AATT	1 cut(s)	331
TatI	WGTACW	1 cut(s)	176
TauI	GCSGC	1 cut(s)	192
TscAI	CASTG	1 cut(s)	39
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	4 cut(s)	17, 232, 338, 542
Tsp45I	GTSAC	1 cut(s)	211
TspRI	CASTG	1 cut(s)	39
VneI	GTGCAC	1 cut(s)	53
VpaK11BI	GGWCC	2 cut(s)	220, 263
XapI	RAATTY	1 cut(s)	331
XceI	RCATGY	2 cut(s)	455, 549
XhoI	CTCGAG	1 cut(s)	121
XmaJI	CCTAGG	1 cut(s)	508
XspI	CTAG	1 cut(s)	509
ZrmI	AGTACT	1 cut(s)	178
Zsp2I	ATGCAT	2 cut(s)	289, 453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.