Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000844

Physical Location & Seq

Genomic Coordinates Forward (+)

26300062 .. 26303479

Gene Structure 3418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G251500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGGGCTTACATTCACGAAGCTTTTCAGCCGGCTTTTTGCCAAGAAAGAGATGCGAATTCTGATGGTTGGTCTTGATGCTGCTGGTAAGACCACCATCCTCTACAAGCTCAAGCTCGGTGAGATCGTCACAACAATTCCCACCATTGGGTTTAATGTGGAGACCGTGGAGTACAAGAACATCAGCTTCACAGTCTGGGATGTCGGGGGTCAGGACAAGATCCGACCTTTGTGGAGGCATTACTTCCAGAACACACAGGGTCTTATCTTTGTTGTGGACAGCAATGACAGAGACCGTGTTGTTGAGGCAAGGGATGAATTGCATAGGATGTTGAATGAGGATGAGCTGCGAGATGCCGTGTTGCTTGTATTTGCTAACAAACAAGATCTTCCCAATGCAATGAATGCTGCTGAAATTACTGATAAGCTTGGCCTCCACTCTCTCAGACAGCGTCACTGGTACATCCAGAGCACTTGTGCAACCTCTGGAGAGGGTCTATATGAGGGGCTGGATTGGCTCTCCAACAACATTGCTAACAAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko05110 ko05134 map04072 map04144 map05110 map05134

Pfam Domains

Protein Families

Arf

Protein Analysis

182

Amino Acids

20.69

Weight (kDa)

6.43

Isoelectric Point (pI)

33.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14670 AT5G14670 AT5G14670
fragaria_vesca	FvH4_1g26580 FvH4_2g05330 FvH4_4g34150 FvH4_6g50940
malus_domestica	MD02G1178300.v1.1 MD05G1087900.v1.1 MD09G1288000.v1.1 MD13G1093800.v1.1 MD16G1095100.v1.1 MD17G1032200.v1.1 MD17G1280300.v1.1
prunus_persica	Prupe.1G251500_v2.0.a1 Prupe.1G251500_v2.0.a1 Prupe.1G251500_v2.0.a1 Prupe.3G005200_v2.0.a1 Prupe.3G005200_v2.0.a1 Prupe.3G005200_v2.0.a1 Prupe.6G229500_v2.0.a1 Prupe.6G229500_v2.0.a1 Prupe.8G134000_v2.0.a1
pyrus_communis	pycom02g14440 pycom05g08740 pycom09g19540 pycom16g08120 pycom17g27820
rosa_chinensis	RchiOBHm_Chr2g0106611 RchiOBHm_Chr2g0172341 RchiOBHm_Chr3g0486681 RchiOBHm_Chr4g0443661 RchiOBHm_Chr6g0255541
rosa_laevigata	RLG00000005904 RLG00000014832 RLG00000017521 RLG00000023067
rosa_multiflora	Rmu_co8483849.1_g000001 Rmu_sc0000261.1_g000013 Rmu_sc0000467.1_g000011 Rmu_sc0001426.1_g000018 Rmu_sc0002360.1_g000004 Rmu_sc0006202.1_g000005 Rmu_sc0006221.1_g000007
rosa_roxburghii	Rroxscaffold_2G00136970 Rroxscaffold_5G00384210 Rroxscaffold_6G00395670 Rroxscaffold_7G00209900
rosa_rugosa	Rorug02G0136700 Rorug02G0136800 Rorug03G0226500 Rorug03G0226600 Rorug03G0226700 Rorug05G0559300
rosa_samantha	Rh2BG198900 Rh2BG647400 Rh2CG614300 Rh2DG194100 Rh2DG662200 Rh4CG431500 Rh6AG077800 Rh6DG065500
rosa_wichuraiana	Rw2G014750 Rw2G052480 Rw3G024590 Rw4G034860 Rw6G006700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	214
AcsI	RAATTY	1 cut(s)	57
AfaI	GTAC	2 cut(s)	173, 461
AfiI	CCNNNNNNNGG	2 cut(s)	146, 147
AgsI	TTSAA	1 cut(s)	334
AluBI	AGCT	6 cut(s)	22, 109, 115, 186, 346, 427
AluI	AGCT	6 cut(s)	22, 109, 115, 186, 346, 427
Alw21I	GWGCWC	1 cut(s)	473
Alw26I	GTCTC	2 cut(s)	155, 285
AlwI	GGATC	1 cut(s)	214
AoxI	GGCC	1 cut(s)	430
ApeKI	GCWGC	3 cut(s)	80, 346, 407
ApoI	RAATTY	1 cut(s)	57
Asp700I	GAANNNNTTC	1 cut(s)	23
AsuHPI	GGTGA	1 cut(s)	131
Bbv12I	GWGCWC	1 cut(s)	473
BbvI	GCAGC	3 cut(s)	67, 333, 394
BccI	CCATC	2 cut(s)	58, 104
BceAI	ACGGC	1 cut(s)	341
BcoDI	GTCTC	2 cut(s)	155, 285
BglII	AGATCT	1 cut(s)	385
BisI	GCNGC	3 cut(s)	81, 347, 408
BlsI	GCNGC	3 cut(s)	82, 348, 409
BmsI	GCATC	3 cut(s)	42, 67, 343
BpmI	CTGGAG	1 cut(s)	507
BpuEI	CTTGAG	1 cut(s)	95
BsaI	GGTCTC	2 cut(s)	155, 285
BsaJI	CCNNGG	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 147
Bse118I	RCCGGY	1 cut(s)	30
Bse1I	ACTGG	1 cut(s)	461
Bse3DI	GCAATG	3 cut(s)	289, 405, 528
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	6 cut(s)	96, 205, 319, 333, 346, 462
BseLI	CCNNNNNNNGG	2 cut(s)	146, 147
BseMI	GCAATG	3 cut(s)	289, 405, 528
BseMII	CTCAG	1 cut(s)	457
BseNI	ACTGG	1 cut(s)	461
BseXI	GCAGC	3 cut(s)	67, 333, 394
BshFI	GGCC	1 cut(s)	432
BsiHKAI	GWGCWC	1 cut(s)	473
BsiSI	CCGG	1 cut(s)	31
BslI	CCNNNNNNNGG	2 cut(s)	146, 147
BsmAI	GTCTC	2 cut(s)	155, 285
BsmI	GAATGC	1 cut(s)	409
BsnI	GGCC	1 cut(s)	432
Bso31I	GGTCTC	2 cut(s)	155, 285
Bsp1286I	GDGCHC	1 cut(s)	473
Bsp143I	GATC	3 cut(s)	123, 219, 385
BspANI	GGCC	1 cut(s)	432
BspCNI	CTCAG	1 cut(s)	456
BspPI	GGATC	1 cut(s)	214
BspTNI	GGTCTC	2 cut(s)	155, 285
BsrDI	GCAATG	3 cut(s)	289, 405, 528
BsrFI	RCCGGY	1 cut(s)	30
BsrI	ACTGG	1 cut(s)	461
BssAI	RCCGGY	1 cut(s)	30
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	3 cut(s)	123, 219, 385
Bst4CI	ACNGT	3 cut(s)	166, 193, 296
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstC8I	GCNNGC	1 cut(s)	32
BstDEI	CTNAG	1 cut(s)	443
BstDSI	CCRYGG	1 cut(s)	165
BstF5I	GGATG	6 cut(s)	96, 205, 319, 333, 346, 462
BstKTI	GATC	3 cut(s)	126, 222, 388
BstMAI	GTCTC	2 cut(s)	155, 285
BstMBI	GATC	3 cut(s)	123, 219, 385
BstMWI	GCNNNNNNNGC	3 cut(s)	404, 514, 539
BstV1I	GCAGC	3 cut(s)	67, 333, 394
BstX2I	RGATCY	2 cut(s)	219, 385
BstYI	RGATCY	2 cut(s)	219, 385
BsuRI	GGCC	1 cut(s)	432
BtgI	CCRYGG	1 cut(s)	165
BtsCI	GGATG	6 cut(s)	96, 205, 319, 333, 346, 462
BtsIMutI	CAGTG	1 cut(s)	454
Cac8I	GCNNGC	1 cut(s)	32
Cfr10I	RCCGGY	1 cut(s)	30
CseI	GACGC	1 cut(s)	440
Csp6I	GTAC	2 cut(s)	172, 460
CviAII	CATG	1 cut(s)	543
CviQI	GTAC	2 cut(s)	172, 460
DdeI	CTNAG	1 cut(s)	443
DpnI	GATC	3 cut(s)	125, 221, 387
DpnII	GATC	3 cut(s)	123, 219, 385
Eco31I	GGTCTC	2 cut(s)	155, 285
EcoRI	GAATTC	1 cut(s)	57
FaeI	CATG	1 cut(s)	546
FaiI	YATR	4 cut(s)	324, 499, 501, 544
FatI	CATG	1 cut(s)	542
Fnu4HI	GCNGC	3 cut(s)	81, 347, 408
FokI	GGATG	6 cut(s)	83, 212, 326, 340, 353, 449
Fsp4HI	GCNGC	3 cut(s)	81, 347, 408
GluI	GCNGC	3 cut(s)	81, 347, 408
GsuI	CTGGAG	1 cut(s)	507
HaeIII	GGCC	1 cut(s)	432
HapII	CCGG	1 cut(s)	31
HgaI	GACGC	1 cut(s)	440
Hin1II	CATG	1 cut(s)	546
HindIII	AAGCTT	2 cut(s)	20, 425
HpaII	CCGG	1 cut(s)	31
HphI	GGTGA	1 cut(s)	131
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188I	TCNGA	3 cut(s)	63, 224, 446
Hpy188III	TCNNGA	6 cut(s)	16, 74, 212, 247, 466, 486
Hpy8I	GTNNAC	1 cut(s)	277
HpyCH4III	ACNGT	3 cut(s)	166, 193, 296
HpyCH4V	TGCA	3 cut(s)	322, 398, 479
HpyF10VI	GCNNNNNNNGC	3 cut(s)	404, 514, 539
HpyF3I	CTNAG	1 cut(s)	443
Hsp92II	CATG	1 cut(s)	546
KroI	GCCGGC	1 cut(s)	30
KroNI	GCCGGC	1 cut(s)	32
Kzo9I	GATC	3 cut(s)	123, 219, 385
Lsp1109I	GCAGC	3 cut(s)	67, 333, 394
LweI	GCATC	3 cut(s)	42, 67, 343
MaeIII	GTNAC	2 cut(s)	127, 452
MalI	GATC	3 cut(s)	125, 221, 387
MboI	GATC	3 cut(s)	123, 219, 385
MboII	GAAGA	1 cut(s)	380
MflI	RGATCY	2 cut(s)	219, 385
MhlI	GDGCHC	1 cut(s)	473
MluCI	AATT	4 cut(s)	57, 135, 317, 414
MmeI	TCCRAC	2 cut(s)	247, 546
MnlI	CCTC	8 cut(s)	110, 228, 298, 331, 443, 484, 493, 496
MroNI	GCCGGC	1 cut(s)	30
MroXI	GAANNNNTTC	1 cut(s)	23
MseI	TTAA	1 cut(s)	153
MspI	CCGG	1 cut(s)	31
Mva1269I	GAATGC	1 cut(s)	409
MwoI	GCNNNNNNNGC	3 cut(s)	404, 514, 539
NaeI	GCCGGC	1 cut(s)	32
NdeII	GATC	3 cut(s)	123, 219, 385
NgoMIV	GCCGGC	1 cut(s)	30
NlaIII	CATG	1 cut(s)	546
NmuCI	GTSAC	2 cut(s)	127, 452
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PctI	GAATGC	1 cut(s)	409
PdiI	GCCGGC	1 cut(s)	32
PdmI	GAANNNNTTC	1 cut(s)	23
PflFI	GACNNNGTC	1 cut(s)	450
PkrI	GCNGC	3 cut(s)	82, 348, 409
PsuI	RGATCY	2 cut(s)	219, 385
PsyI	GACNNNGTC	1 cut(s)	450
RsaI	GTAC	2 cut(s)	173, 461
RsaNI	GTAC	2 cut(s)	172, 460
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	3 cut(s)	81, 347, 408
Sau3AI	GATC	3 cut(s)	123, 219, 385
SduI	GDGCHC	1 cut(s)	473
SetI	ASST	8 cut(s)	24, 111, 117, 188, 229, 348, 429, 485
SfaNI	GCATC	3 cut(s)	42, 67, 343
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	4 cut(s)	57, 135, 317, 414
TaaI	ACNGT	3 cut(s)	166, 193, 296
TasI	AATT	4 cut(s)	57, 135, 317, 414
TatI	WGTACW	1 cut(s)	171
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	1 cut(s)	461
TseFI	GTSAC	2 cut(s)	127, 452
TseI	GCWGC	3 cut(s)	80, 346, 407
Tsp45I	GTSAC	2 cut(s)	127, 452
TspDTI	ATGAA	2 cut(s)	330, 416
TspRI	CASTG	1 cut(s)	461
Tth111I	GACNNNGTC	1 cut(s)	450
XapI	RAATTY	1 cut(s)	57
XmnI	GAANNNNTTC	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.