Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0000844

Physical Location & Seq

Genomic Coordinates Reverse (-)

316814 .. 318887

Gene Structure 2074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G005200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGGGCTGTCTTTCACGAAGCTTTTCAGTCGGCTCTTTGCCAAGAAAGAGATGCGTATTCTGATGGTGGGTCTCGATGCGGCTGGTAAGACCACCATTCTCTACAAGCTCAAGCTCGGCGAGATCGTCACCACCATTCCCACCATTGGATTCAATGTGGAGACTGTGGAATACAAGAACATCAGCTTTACCGTCTGGGATGTTGGGGGTCAGGACAAGATCCGACCTTTGTGGAGGCATTACTTCCAAAACACACAAGGACTTATCTTTGTGGTTGATAGTAATGATCGTGACCGTGTCGTTGAAGCCAGGGATGAGCTGCACAGGATGTTGAATGAGGATGAGTTGAGGGAGGCTGTCCTCCTTGTATTTGCAAATAAGCAAGATCTTCCAAATGCCATGAATGCTGCTGAAATTACTGATAAGCTTGGCCTTCACTCCCTCCGTCAACGCCACTGGTATATCCAGAGTACATGTGCCACATCTGGTGAAGGACTGTACGAGGGACTTGACTGGCTCTCAAACAATATTGCAAACAAGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006471 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0019538 GO:0033036 GO:0034613 GO:0036211 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko05110 ko05134 map04072 map04144 map05110 map05134

Pfam Domains

Protein Families

Arf

Protein Analysis

182

Amino Acids

20.69

Weight (kDa)

6.43

Isoelectric Point (pI)

32.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14670 AT5G14670 AT5G14670
fragaria_vesca	FvH4_1g26580 FvH4_2g05330 FvH4_4g34150 FvH4_6g50940
malus_domestica	MD02G1178300.v1.1 MD05G1087900.v1.1 MD09G1288000.v1.1 MD13G1093800.v1.1 MD16G1095100.v1.1 MD17G1032200.v1.1 MD17G1280300.v1.1
prunus_persica	Prupe.1G251500_v2.0.a1 Prupe.1G251500_v2.0.a1 Prupe.1G251500_v2.0.a1 Prupe.3G005200_v2.0.a1 Prupe.3G005200_v2.0.a1 Prupe.3G005200_v2.0.a1 Prupe.6G229500_v2.0.a1 Prupe.6G229500_v2.0.a1 Prupe.8G134000_v2.0.a1
pyrus_communis	pycom02g14440 pycom05g08740 pycom09g19540 pycom16g08120 pycom17g27820
rosa_chinensis	RchiOBHm_Chr2g0106611 RchiOBHm_Chr2g0172341 RchiOBHm_Chr3g0486681 RchiOBHm_Chr4g0443661 RchiOBHm_Chr6g0255541
rosa_laevigata	RLG00000005904 RLG00000014832 RLG00000017521 RLG00000023067
rosa_multiflora	Rmu_co8483849.1_g000001 Rmu_sc0000261.1_g000013 Rmu_sc0000467.1_g000011 Rmu_sc0001426.1_g000018 Rmu_sc0002360.1_g000004 Rmu_sc0006202.1_g000005 Rmu_sc0006221.1_g000007
rosa_roxburghii	Rroxscaffold_2G00136970 Rroxscaffold_5G00384210 Rroxscaffold_6G00395670 Rroxscaffold_7G00209900
rosa_rugosa	Rorug02G0136700 Rorug02G0136800 Rorug03G0226500 Rorug03G0226600 Rorug03G0226700 Rorug05G0559300
rosa_samantha	Rh2BG198900 Rh2BG647400 Rh2CG614300 Rh2DG194100 Rh2DG662200 Rh4CG431500 Rh6AG077800 Rh6DG065500
rosa_wichuraiana	Rw2G014750 Rw2G052480 Rw3G024590 Rw4G034860 Rw6G006700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	80
AclWI	GGATC	1 cut(s)	214
AfaI	GTAC	2 cut(s)	472, 500
AfiI	CCNNNNNNNGG	1 cut(s)	146
AflIII	ACRYGT	1 cut(s)	473
AgsI	TTSAA	3 cut(s)	154, 305, 334
AjnI	CCWGG	1 cut(s)	308
AluBI	AGCT	6 cut(s)	22, 109, 115, 186, 319, 427
AluI	AGCT	6 cut(s)	22, 109, 115, 186, 319, 427
Alw26I	GTCTC	2 cut(s)	77, 155
AlwI	GGATC	1 cut(s)	214
AoxI	GGCC	1 cut(s)	430
ApeKI	GCWGC	2 cut(s)	319, 407
Asp700I	GAANNNNTTC	1 cut(s)	23
AsuHPI	GGTGA	2 cut(s)	121, 500
BbvI	GCAGC	2 cut(s)	306, 394
BccI	CCATC	1 cut(s)	58
BciT130I	CCWGG	1 cut(s)	310
BcoDI	GTCTC	2 cut(s)	77, 155
BglII	AGATCT	1 cut(s)	385
BisI	GCNGC	3 cut(s)	81, 320, 408
BlsI	GCNGC	3 cut(s)	82, 321, 409
Bme1390I	CCNGG	1 cut(s)	310
BmrFI	CCNGG	1 cut(s)	310
BmsI	GCATC	2 cut(s)	42, 67
BpuEI	CTTGAG	1 cut(s)	95
BsaI	GGTCTC	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse1I	ACTGG	2 cut(s)	461, 518
BseBI	CCWGG	1 cut(s)	310
BseDI	CCNNGG	1 cut(s)	309
BseGI	GGATG	4 cut(s)	205, 319, 333, 346
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseNI	ACTGG	2 cut(s)	461, 518
BseXI	GCAGC	2 cut(s)	306, 394
BsgI	GTGCAG	1 cut(s)	305
BshFI	GGCC	1 cut(s)	432
BslFI	GGGAC	1 cut(s)	519
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmAI	GTCTC	2 cut(s)	77, 155
BsmFI	GGGAC	1 cut(s)	519
BsmI	GAATGC	1 cut(s)	409
BsnI	GGCC	1 cut(s)	432
Bso31I	GGTCTC	1 cut(s)	77
Bsp143I	GATC	4 cut(s)	123, 219, 286, 385
BspACI	CCGC	1 cut(s)	80
BspANI	GGCC	1 cut(s)	432
BspPI	GGATC	1 cut(s)	214
BspTNI	GGTCTC	1 cut(s)	77
BsrI	ACTGG	2 cut(s)	461, 518
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	4 cut(s)	123, 219, 286, 385
Bst2UI	CCWGG	1 cut(s)	310
Bst4CI	ACNGT	4 cut(s)	166, 193, 296, 498
BstF5I	GGATG	4 cut(s)	205, 319, 333, 346
BstKTI	GATC	4 cut(s)	126, 222, 289, 388
BstMAI	GTCTC	2 cut(s)	77, 155
BstMBI	GATC	4 cut(s)	123, 219, 286, 385
BstMWI	GCNNNNNNNGC	2 cut(s)	404, 539
BstNI	CCWGG	1 cut(s)	310
BstNSI	RCATGY	1 cut(s)	477
BstSCI	CCNGG	1 cut(s)	308
BstV1I	GCAGC	2 cut(s)	306, 394
BstX2I	RGATCY	2 cut(s)	219, 385
BstYI	RGATCY	2 cut(s)	219, 385
BsuRI	GGCC	1 cut(s)	432
BtsCI	GGATG	4 cut(s)	205, 319, 333, 346
BtsIMutI	CAGTG	1 cut(s)	454
Csp6I	GTAC	2 cut(s)	471, 499
CviAII	CATG	2 cut(s)	400, 474
CviQI	GTAC	2 cut(s)	471, 499
DpnI	GATC	4 cut(s)	125, 221, 288, 387
DpnII	GATC	4 cut(s)	123, 219, 286, 385
Eco31I	GGTCTC	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	308
FaeI	CATG	2 cut(s)	403, 477
FaiI	YATR	4 cut(s)	401, 462, 475, 544
FaqI	GGGAC	1 cut(s)	519
FatI	CATG	2 cut(s)	399, 473
Fnu4HI	GCNGC	3 cut(s)	81, 320, 408
FokI	GGATG	4 cut(s)	212, 326, 340, 353
Fsp4HI	GCNGC	3 cut(s)	81, 320, 408
GluI	GCNGC	3 cut(s)	81, 320, 408
HaeIII	GGCC	1 cut(s)	432
Hin1II	CATG	2 cut(s)	403, 477
HincII	GTYRAC	1 cut(s)	449
HindII	GTYRAC	1 cut(s)	449
HindIII	AAGCTT	2 cut(s)	20, 425
HinfI	GANTC	1 cut(s)	150
HphI	GGTGA	2 cut(s)	121, 500
Hpy166II	GTNNAC	1 cut(s)	449
Hpy188I	TCNGA	2 cut(s)	63, 224
Hpy188III	TCNNGA	5 cut(s)	16, 74, 212, 290, 466
Hpy8I	GTNNAC	1 cut(s)	449
HpyAV	CCTTC	2 cut(s)	443, 485
HpyCH4III	ACNGT	4 cut(s)	166, 193, 296, 498
HpyCH4V	TGCA	3 cut(s)	322, 374, 533
HpyF10VI	GCNNNNNNNGC	2 cut(s)	404, 539
Hsp92II	CATG	2 cut(s)	403, 477
Kzo9I	GATC	4 cut(s)	123, 219, 286, 385
Lsp1109I	GCAGC	2 cut(s)	306, 394
LweI	GCATC	2 cut(s)	42, 67
MaeIII	GTNAC	2 cut(s)	127, 290
MalI	GATC	4 cut(s)	125, 221, 288, 387
MboI	GATC	4 cut(s)	123, 219, 286, 385
MboII	GAAGA	1 cut(s)	380
MflI	RGATCY	2 cut(s)	219, 385
MluCI	AATT	1 cut(s)	414
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	7 cut(s)	228, 331, 342, 346, 371, 452, 496
MroXI	GAANNNNTTC	1 cut(s)	23
MspR9I	CCNGG	1 cut(s)	310
Mva1269I	GAATGC	1 cut(s)	409
MvaI	CCWGG	1 cut(s)	310
MwoI	GCNNNNNNNGC	2 cut(s)	404, 539
NdeII	GATC	4 cut(s)	123, 219, 286, 385
NlaIII	CATG	2 cut(s)	403, 477
NmeAIII	GCCGAG	1 cut(s)	96
NmuCI	GTSAC	2 cut(s)	127, 290
NspI	RCATGY	1 cut(s)	477
PciI	ACATGT	1 cut(s)	473
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PctI	GAATGC	1 cut(s)	409
PdmI	GAANNNNTTC	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	150
PflFI	GACNNNGTC	1 cut(s)	296
PkrI	GCNGC	3 cut(s)	82, 321, 409
PscI	ACATGT	1 cut(s)	473
Psp6I	CCWGG	1 cut(s)	308
PspGI	CCWGG	1 cut(s)	308
PsuI	RGATCY	2 cut(s)	219, 385
PsyI	GACNNNGTC	1 cut(s)	296
RsaI	GTAC	2 cut(s)	472, 500
RsaNI	GTAC	2 cut(s)	471, 499
SatI	GCNGC	3 cut(s)	81, 320, 408
Sau3AI	GATC	4 cut(s)	123, 219, 286, 385
ScrFI	CCNGG	1 cut(s)	310
SetI	ASST	7 cut(s)	24, 111, 117, 188, 229, 321, 429
SfaNI	GCATC	2 cut(s)	42, 67
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	1 cut(s)	414
SsiI	CCGC	1 cut(s)	80
SspI	AATATT	1 cut(s)	529
StyD4I	CCNGG	1 cut(s)	308
TaaI	ACNGT	4 cut(s)	166, 193, 296, 498
TaqI	TCGA	1 cut(s)	75
TasI	AATT	1 cut(s)	414
TatI	WGTACW	1 cut(s)	470
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	1 cut(s)	150
TscAI	CASTG	1 cut(s)	461
TseFI	GTSAC	2 cut(s)	127, 290
TseI	GCWGC	2 cut(s)	319, 407
Tsp45I	GTSAC	2 cut(s)	127, 290
TspDTI	ATGAA	1 cut(s)	416
TspGWI	ACGGA	1 cut(s)	434
TspRI	CASTG	1 cut(s)	461
Tth111I	GACNNNGTC	1 cut(s)	296
XceI	RCATGY	1 cut(s)	477
XmnI	GAANNNNTTC	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.