FvH4_6g50940
ERF Family

Belongs to the small GTPase superfamily. Arf family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000844
Physical Location & Seq
Reverse (-)
37833792 .. 37837228
3437 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g50940.t1

Sequence Viewer

Length: 546 bp
ATGGGACTGACGTTCACGAAGCTCTTCAGCCGGCTTTTCGCCAAGAAGGAGATGCGAATTCTGATGGTCGGTCTCGACGCCGCCGGTAAGACTACGATCTTGTACAAGCTCAAGCTCGGTGAAATCGTCACCACCATCCCTACCATCGGATTTAATGTGGAGACTGTGGAATACAAGAACATTAGCTTCACTGTGTGGGATGTCGGGGGTCAGGACAAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAAGGGCTTATTTTTGTGGTTGATAGCAATGACAGGGATCGAGTTGTTGAGGCAAGGGATGAGTTGCACAGGATGTTGAATGAGGATGAACTGAGGGATGCTGTTTTGCTCGTATTTGCCAACAAACAAGATCTTCCCAATGCAATGAATGCTGCAGAAATAACTGATAAGCTTGGTCTTCATTCTCTCCGCCAACGTCACTGGTACATTCAGAGCACATGTGCTACCTCTGGAGAGGGACTGTACGAGGGACTGGATTGGCTTTCCAACAACATTGCTAGCAAGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04072 ko04144 ko05110 ko05134 map04072 map04144 map05110 map05134
Pfam Domains
Protein Families
Arf

Protein Analysis

182

Amino Acids

20.67

Weight (kDa)

6.43

Isoelectric Point (pI)

32.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 5 - 177 1.2e-81 ADP-ribosylation factor family
SRPRB PF09439 16 - 143 4.8e-13 Signal recognition particle receptor beta subunit
Roc PF08477 19 - 129 8.3e-14 Ras of Complex, Roc, domain of DAPkinase
Ras PF00071 19 - 173 5.2e-12 Ras family
Gtr1_RagA PF04670 19 - 141 1.6e-09 Gtr1/RagA G protein conserved region
G-alpha PF00503 45 - 111 7.9e-10 G-protein alpha subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 81, 445
AclWI GGATC 2 cut(s) 214, 300
AcsI RAATTY 1 cut(s) 57
AcuI CTGAAG 1 cut(s) 10
AcyI GRCGYC 1 cut(s) 78
AdeI CACNNNGTG 1 cut(s) 195
AfaI GTAC 3 cut(s) 104, 461, 500
AfiI CCNNNNNNNGG 1 cut(s) 146
AflIII ACRYGT 1 cut(s) 473
AgsI TTSAA 1 cut(s) 334
AluBI AGCT 5 cut(s) 22, 109, 115, 186, 427
AluI AGCT 5 cut(s) 22, 109, 115, 186, 427
Alw21I GWGCWC 1 cut(s) 473
Alw26I GTCTC 2 cut(s) 77, 155
AlwI GGATC 2 cut(s) 214, 300
ApeKI GCWGC 1 cut(s) 407
ApoI RAATTY 1 cut(s) 57
Asp700I GAANNNNTTC 1 cut(s) 23
AsuHPI GGTGA 2 cut(s) 121, 131
AsuNHI GCTAGC 1 cut(s) 533
BbsI GAAGAC 1 cut(s) 425
Bbv12I GWGCWC 1 cut(s) 473
BbvI GCAGC 1 cut(s) 394
BccI CCATC 3 cut(s) 58, 143, 152
BcoDI GTCTC 2 cut(s) 77, 155
BfaI CTAG 1 cut(s) 534
BfmI CTRYAG 1 cut(s) 408
BglII AGATCT 1 cut(s) 385
BisI GCNGC 2 cut(s) 81, 408
BlsI GCNGC 2 cut(s) 82, 409
BmsI GCATC 2 cut(s) 42, 343
BmtI GCTAGC 1 cut(s) 537
BpiI GAAGAC 1 cut(s) 425
BpmI CTGGAG 1 cut(s) 507
BpuEI CTTGAG 2 cut(s) 95, 240
BsaHI GRCGYC 1 cut(s) 78
BsaI GGTCTC 1 cut(s) 77
Bsc4I CCNNNNNNNGG 1 cut(s) 146
Bse118I RCCGGY 2 cut(s) 30, 83
Bse1I ACTGG 2 cut(s) 461, 513
Bse3DI GCAATG 3 cut(s) 289, 405, 528
BseGI GGATG 6 cut(s) 135, 205, 319, 333, 346, 358
BseLI CCNNNNNNNGG 1 cut(s) 146
BseMI GCAATG 3 cut(s) 289, 405, 528
BseMII CTCAG 1 cut(s) 338
BseNI ACTGG 2 cut(s) 461, 513
BseXI GCAGC 1 cut(s) 394
BsiHKAI GWGCWC 1 cut(s) 473
BsiSI CCGG 2 cut(s) 31, 84
BslFI GGGAC 3 cut(s) 18, 507, 519
BslI CCNNNNNNNGG 1 cut(s) 146
BsmAI GTCTC 2 cut(s) 77, 155
BsmFI GGGAC 3 cut(s) 18, 507, 519
BsmI GAATGC 1 cut(s) 409
Bso31I GGTCTC 1 cut(s) 77
Bsp1286I GDGCHC 1 cut(s) 473
Bsp1407I TGTACA 1 cut(s) 102
Bsp143I GATC 4 cut(s) 96, 219, 292, 385
BspACI CCGC 2 cut(s) 81, 445
BspCNI CTCAG 1 cut(s) 339
BspMAI CTGCAG 1 cut(s) 412
BspOI GCTAGC 1 cut(s) 537
BspPI GGATC 2 cut(s) 214, 300
BspQI GCTCTTC 1 cut(s) 29
BspTNI GGTCTC 1 cut(s) 77
BsrDI GCAATG 3 cut(s) 289, 405, 528
BsrFI RCCGGY 2 cut(s) 30, 83
BsrGI TGTACA 1 cut(s) 102
BsrI ACTGG 2 cut(s) 461, 513
BssAI RCCGGY 2 cut(s) 30, 83
BssMI GATC 4 cut(s) 96, 219, 292, 385
BssNI GRCGYC 1 cut(s) 78
Bst4CI ACNGT 3 cut(s) 166, 193, 498
Bst6I CTCTTC 1 cut(s) 29
BstACI GRCGYC 1 cut(s) 78
BstAPI GCANNNNNTGC 1 cut(s) 404
BstAUI TGTACA 1 cut(s) 102
BstC8I GCNNGC 2 cut(s) 32, 535
BstDEI CTNAG 1 cut(s) 347
BstF5I GGATG 6 cut(s) 135, 205, 319, 333, 346, 358
BstKTI GATC 4 cut(s) 99, 222, 295, 388
BstMAI GTCTC 2 cut(s) 77, 155
BstMBI GATC 4 cut(s) 96, 219, 292, 385
BstMWI GCNNNNNNNGC 2 cut(s) 404, 539
BstNSI RCATGY 1 cut(s) 477
BstSFI CTRYAG 1 cut(s) 408
BstV1I GCAGC 1 cut(s) 394
BstV2I GAAGAC 1 cut(s) 425
BstX2I RGATCY 2 cut(s) 219, 385
BstYI RGATCY 2 cut(s) 219, 385
BtsCI GGATG 6 cut(s) 135, 205, 319, 333, 346, 358
BtsIMutI CAGTG 2 cut(s) 189, 454
Cac8I GCNNGC 2 cut(s) 32, 535
Cfr10I RCCGGY 2 cut(s) 30, 83
CseI GACGC 1 cut(s) 86
Csp6I GTAC 3 cut(s) 103, 460, 499
CviAII CATG 1 cut(s) 474
CviJI RGCY 9 cut(s) 22, 30, 34, 109, 115, 186, 262, 427, 517
CviKI_1 RGCY 9 cut(s) 22, 30, 34, 109, 115, 186, 262, 427, 517
CviQI GTAC 3 cut(s) 103, 460, 499
DdeI CTNAG 1 cut(s) 347
DpnI GATC 4 cut(s) 98, 221, 294, 387
DpnII GATC 4 cut(s) 96, 219, 292, 385
DraIII CACNNNGTG 1 cut(s) 195
Eam1104I CTCTTC 1 cut(s) 29
EarI CTCTTC 1 cut(s) 29
EciI GGCGGA 1 cut(s) 434
Eco31I GGTCTC 1 cut(s) 77
Eco57I CTGAAG 1 cut(s) 10
EcoRI GAATTC 1 cut(s) 57
FaeI CATG 1 cut(s) 477
FaiI YATR 2 cut(s) 475, 544
FaqI GGGAC 3 cut(s) 18, 507, 519
FatI CATG 1 cut(s) 473
Fnu4HI GCNGC 2 cut(s) 81, 408
FokI GGATG 6 cut(s) 122, 212, 326, 340, 353, 365
Fsp4HI GCNGC 2 cut(s) 81, 408
FspBI CTAG 1 cut(s) 534
GluI GCNGC 2 cut(s) 81, 408
GsuI CTGGAG 1 cut(s) 507
HapII CCGG 2 cut(s) 31, 84
HgaI GACGC 1 cut(s) 86
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 1 cut(s) 477
HindIII AAGCTT 1 cut(s) 425
HpaII CCGG 2 cut(s) 31, 84
HphI GGTGA 2 cut(s) 121, 131
Hpy166II GTNNAC 1 cut(s) 15
Hpy188I TCNGA 3 cut(s) 63, 149, 468
Hpy188III TCNNGA 5 cut(s) 16, 74, 212, 247, 486
Hpy8I GTNNAC 1 cut(s) 15
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 1 cut(s) 40
HpyCH4III ACNGT 3 cut(s) 166, 193, 498
HpyCH4IV ACGT 2 cut(s) 11, 451
HpyCH4V TGCA 3 cut(s) 322, 398, 410
HpyF10VI GCNNNNNNNGC 2 cut(s) 404, 539
HpyF3I CTNAG 1 cut(s) 347
HpySE526I ACGT 2 cut(s) 11, 451
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 1 cut(s) 477
KroI GCCGGC 1 cut(s) 30
KroNI GCCGGC 1 cut(s) 32
Kzo9I GATC 4 cut(s) 96, 219, 292, 385
LguI GCTCTTC 1 cut(s) 29
LpnPI CCDG 9 cut(s) 44, 97, 197, 260, 274, 310, 442, 471, 494
Lsp1109I GCAGC 1 cut(s) 394
LweI GCATC 2 cut(s) 42, 343
MaeI CTAG 1 cut(s) 534
MaeII ACGT 2 cut(s) 11, 451
MaeIII GTNAC 2 cut(s) 127, 452
MalI GATC 4 cut(s) 98, 221, 294, 387
MboI GATC 4 cut(s) 96, 219, 292, 385
MboII GAAGA 3 cut(s) 16, 380, 425
MflI RGATCY 2 cut(s) 219, 385
MhlI GDGCHC 1 cut(s) 473
MluCI AATT 1 cut(s) 57
MmeI TCCRAC 1 cut(s) 546
MnlI CCTC 7 cut(s) 228, 298, 331, 342, 484, 493, 496
MroNI GCCGGC 1 cut(s) 30
MroXI GAANNNNTTC 1 cut(s) 23
MseI TTAA 1 cut(s) 153
MspI CCGG 2 cut(s) 31, 84
Mva1269I GAATGC 1 cut(s) 409
MwoI GCNNNNNNNGC 2 cut(s) 404, 539
NaeI GCCGGC 1 cut(s) 32
NdeII GATC 4 cut(s) 96, 219, 292, 385
NgoMIV GCCGGC 1 cut(s) 30
NheI GCTAGC 1 cut(s) 533
NlaIII CATG 1 cut(s) 477
NmuCI GTSAC 2 cut(s) 127, 452
NspI RCATGY 1 cut(s) 477
PciI ACATGT 1 cut(s) 473
PciSI GCTCTTC 1 cut(s) 29
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PctI GAATGC 1 cut(s) 409
PdiI GCCGGC 1 cut(s) 32
PdmI GAANNNNTTC 1 cut(s) 23
PkrI GCNGC 2 cut(s) 82, 409
PscI ACATGT 1 cut(s) 473
PstI CTGCAG 1 cut(s) 412
PsuI RGATCY 2 cut(s) 219, 385
RsaI GTAC 3 cut(s) 104, 461, 500
RsaNI GTAC 3 cut(s) 103, 460, 499
SapI GCTCTTC 1 cut(s) 29
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 2 cut(s) 81, 408
Sau3AI GATC 4 cut(s) 96, 219, 292, 385
SduI GDGCHC 1 cut(s) 473
SetI ASST 8 cut(s) 14, 24, 111, 117, 188, 429, 454, 485
SfaNI GCATC 2 cut(s) 42, 343
SfcI CTRYAG 1 cut(s) 408
SmlI CTYRAG 2 cut(s) 110, 255
SmoI CTYRAG 2 cut(s) 110, 255
Sse9I AATT 1 cut(s) 57
SsiI CCGC 2 cut(s) 81, 445
SspMI CTAG 1 cut(s) 534
TaaI ACNGT 3 cut(s) 166, 193, 498
TaiI ACGT 2 cut(s) 14, 454
TaqI TCGA 2 cut(s) 75, 295
TaqII GACCGA 1 cut(s) 59
TasI AATT 1 cut(s) 57
TatI WGTACW 1 cut(s) 102
TauI GCSGC 1 cut(s) 83
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 2 cut(s) 196, 461
TseFI GTSAC 2 cut(s) 127, 452
TseI GCWGC 1 cut(s) 407
Tsp45I GTSAC 2 cut(s) 127, 452
TspDTI ATGAA 3 cut(s) 357, 416, 425
TspGWI ACGGA 1 cut(s) 212
TspRI CASTG 2 cut(s) 196, 461
XapI RAATTY 1 cut(s) 57
XceI RCATGY 1 cut(s) 477
XmnI GAANNNNTTC 1 cut(s) 23
XspI CTAG 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.