Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0000844

Physical Location & Seq

Genomic Coordinates Reverse (-)

5350019 .. 5352163

Gene Structure 2145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g08120.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGCGAATTCTGATGGTTGGTCTCGATGCCGCTGGTAAGACCACCATCCTCTACAAGCTCAAGCTTGGTGAGATCGTCACAACCATTCCCACCATCGGGTTTAATGTGGAGACCGTGGAGTACAAGAACATCAGCTTCACCGTCTGGGATGTCGGGGGTCAGGACAAGATCCGACCATTGTGGAGGCACTATTTCCAGAACACGCAGGGTCTTATCTTTGTTGTGGACAGCAATGACAGAGACCGTGTTGTTGAGGCAAGGGACGAATTGCATAGGATGTTGAATGAGGATGAACTGCGTGATGCTGTGTTGCTCGTATTTGCTAACAAACAAGATCTTCCCAATGCCATGAATGCTGCTGAAATTACTGATAAGCTTGGCCTCCACTCTCTGAGACAGCGTCACTGGTACATCCAGAGCACCTGTGCAACGTCCGGGGAGGGTCTATATGAGGGGCTGGATTGGCTCTCCAACAACATTGCTAACAAGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko05110 ko05134 map04072 map04144 map05110 map05134

Pfam Domains

Protein Families

Arf

Protein Analysis

165

Amino Acids

18.69

Weight (kDa)

5.55

Isoelectric Point (pI)

34.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14670 AT5G14670 AT5G14670
fragaria_vesca	FvH4_1g26580 FvH4_2g05330 FvH4_4g34150 FvH4_6g50940
malus_domestica	MD02G1178300.v1.1 MD05G1087900.v1.1 MD09G1288000.v1.1 MD13G1093800.v1.1 MD16G1095100.v1.1 MD17G1032200.v1.1 MD17G1280300.v1.1
prunus_persica	Prupe.1G251500_v2.0.a1 Prupe.1G251500_v2.0.a1 Prupe.1G251500_v2.0.a1 Prupe.3G005200_v2.0.a1 Prupe.3G005200_v2.0.a1 Prupe.3G005200_v2.0.a1 Prupe.6G229500_v2.0.a1 Prupe.6G229500_v2.0.a1 Prupe.8G134000_v2.0.a1
pyrus_communis	pycom02g14440 pycom05g08740 pycom09g19540 pycom16g08120 pycom17g27820
rosa_chinensis	RchiOBHm_Chr2g0106611 RchiOBHm_Chr2g0172341 RchiOBHm_Chr3g0486681 RchiOBHm_Chr4g0443661 RchiOBHm_Chr6g0255541
rosa_laevigata	RLG00000005904 RLG00000014832 RLG00000017521 RLG00000023067
rosa_multiflora	Rmu_co8483849.1_g000001 Rmu_sc0000261.1_g000013 Rmu_sc0000467.1_g000011 Rmu_sc0001426.1_g000018 Rmu_sc0002360.1_g000004 Rmu_sc0006202.1_g000005 Rmu_sc0006221.1_g000007
rosa_roxburghii	Rroxscaffold_2G00136970 Rroxscaffold_5G00384210 Rroxscaffold_6G00395670 Rroxscaffold_7G00209900
rosa_rugosa	Rorug02G0136700 Rorug02G0136800 Rorug03G0226500 Rorug03G0226600 Rorug03G0226700 Rorug05G0559300
rosa_samantha	Rh2BG198900 Rh2BG647400 Rh2CG614300 Rh2DG194100 Rh2DG662200 Rh4CG431500 Rh6AG077800 Rh6DG065500
rosa_wichuraiana	Rw2G014750 Rw2G052480 Rw3G024590 Rw4G034860 Rw6G006700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	30
AclWI	GGATC	1 cut(s)	163
AcsI	RAATTY	1 cut(s)	6
AfaI	GTAC	2 cut(s)	122, 410
AfiI	CCNNNNNNNGG	2 cut(s)	95, 96
AgsI	TTSAA	1 cut(s)	283
AluBI	AGCT	4 cut(s)	58, 64, 135, 376
AluI	AGCT	4 cut(s)	58, 64, 135, 376
Alw21I	GWGCWC	1 cut(s)	422
Alw26I	GTCTC	4 cut(s)	26, 104, 234, 388
AlwI	GGATC	1 cut(s)	163
AoxI	GGCC	1 cut(s)	379
ApeKI	GCWGC	1 cut(s)	356
ApoI	RAATTY	1 cut(s)	6
AsuC2I	CCSGG	1 cut(s)	436
AsuHPI	GGTGA	2 cut(s)	80, 130
Bbv12I	GWGCWC	1 cut(s)	422
BbvI	GCAGC	1 cut(s)	343
BccI	CCATC	3 cut(s)	7, 53, 101
BcnI	CCSGG	1 cut(s)	436
BcoDI	GTCTC	4 cut(s)	26, 104, 234, 388
BglII	AGATCT	1 cut(s)	334
BisI	GCNGC	2 cut(s)	30, 357
BlsI	GCNGC	2 cut(s)	31, 358
Bme1390I	CCNGG	1 cut(s)	436
BmrFI	CCNGG	1 cut(s)	436
BmsI	GCATC	2 cut(s)	16, 292
BpuEI	CTTGAG	1 cut(s)	44
BpuMI	CCSGG	1 cut(s)	436
BsaI	GGTCTC	3 cut(s)	26, 104, 234
BsaJI	CCNNGG	2 cut(s)	114, 435
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 96
Bse1I	ACTGG	1 cut(s)	410
Bse3DI	GCAATG	2 cut(s)	238, 477
BseDI	CCNNGG	2 cut(s)	114, 435
BseGI	GGATG	5 cut(s)	45, 154, 282, 295, 411
BseLI	CCNNNNNNNGG	2 cut(s)	95, 96
BseMI	GCAATG	2 cut(s)	238, 477
BseMII	CTCAG	1 cut(s)	383
BseNI	ACTGG	1 cut(s)	410
BseXI	GCAGC	1 cut(s)	343
BshFI	GGCC	1 cut(s)	381
BsiHKAI	GWGCWC	1 cut(s)	422
BsiSI	CCGG	1 cut(s)	435
BslFI	GGGAC	1 cut(s)	275
BslI	CCNNNNNNNGG	2 cut(s)	95, 96
BsmAI	GTCTC	4 cut(s)	26, 104, 234, 388
BsmFI	GGGAC	1 cut(s)	275
BsmI	GAATGC	1 cut(s)	358
BsnI	GGCC	1 cut(s)	381
Bso31I	GGTCTC	3 cut(s)	26, 104, 234
Bsp1286I	GDGCHC	1 cut(s)	422
Bsp143I	GATC	3 cut(s)	72, 168, 334
BspACI	CCGC	1 cut(s)	30
BspANI	GGCC	1 cut(s)	381
BspCNI	CTCAG	1 cut(s)	384
BspPI	GGATC	1 cut(s)	163
BspTNI	GGTCTC	3 cut(s)	26, 104, 234
BsrDI	GCAATG	2 cut(s)	238, 477
BsrI	ACTGG	1 cut(s)	410
BssECI	CCNNGG	2 cut(s)	114, 435
BssMI	GATC	3 cut(s)	72, 168, 334
Bst4CI	ACNGT	3 cut(s)	115, 142, 245
BstDEI	CTNAG	1 cut(s)	392
BstDSI	CCRYGG	1 cut(s)	114
BstF5I	GGATG	5 cut(s)	45, 154, 282, 295, 411
BstKTI	GATC	3 cut(s)	75, 171, 337
BstMAI	GTCTC	4 cut(s)	26, 104, 234, 388
BstMBI	GATC	3 cut(s)	72, 168, 334
BstMWI	GCNNNNNNNGC	3 cut(s)	353, 463, 488
BstSCI	CCNGG	1 cut(s)	434
BstV1I	GCAGC	1 cut(s)	343
BstX2I	RGATCY	2 cut(s)	168, 334
BstYI	RGATCY	2 cut(s)	168, 334
BsuRI	GGCC	1 cut(s)	381
BtgI	CCRYGG	1 cut(s)	114
BtsCI	GGATG	5 cut(s)	45, 154, 282, 295, 411
BtsIMutI	CAGTG	1 cut(s)	403
CseI	GACGC	1 cut(s)	389
Csp6I	GTAC	2 cut(s)	121, 409
CviAII	CATG	1 cut(s)	349
CviJI	RGCY	7 cut(s)	58, 64, 135, 376, 381, 457, 466
CviKI_1	RGCY	7 cut(s)	58, 64, 135, 376, 381, 457, 466
CviQI	GTAC	2 cut(s)	121, 409
DdeI	CTNAG	1 cut(s)	392
DpnI	GATC	3 cut(s)	74, 170, 336
DpnII	GATC	3 cut(s)	72, 168, 334
Eco31I	GGTCTC	3 cut(s)	26, 104, 234
EcoRI	GAATTC	1 cut(s)	6
FaeI	CATG	1 cut(s)	352
FaiI	YATR	4 cut(s)	273, 350, 448, 450
FaqI	GGGAC	1 cut(s)	275
FatI	CATG	1 cut(s)	348
Fnu4HI	GCNGC	2 cut(s)	30, 357
FokI	GGATG	5 cut(s)	32, 161, 289, 302, 398
Fsp4HI	GCNGC	2 cut(s)	30, 357
GluI	GCNGC	2 cut(s)	30, 357
HaeIII	GGCC	1 cut(s)	381
HapII	CCGG	1 cut(s)	435
HgaI	GACGC	1 cut(s)	389
Hin1II	CATG	1 cut(s)	352
HindIII	AAGCTT	2 cut(s)	62, 374
HpaII	CCGG	1 cut(s)	435
HphI	GGTGA	2 cut(s)	80, 130
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	3 cut(s)	12, 173, 393
Hpy188III	TCNNGA	4 cut(s)	23, 161, 196, 415
Hpy8I	GTNNAC	1 cut(s)	226
HpyCH4III	ACNGT	3 cut(s)	115, 142, 245
HpyCH4IV	ACGT	1 cut(s)	431
HpyCH4V	TGCA	2 cut(s)	271, 428
HpyF10VI	GCNNNNNNNGC	3 cut(s)	353, 463, 488
HpyF3I	CTNAG	1 cut(s)	392
HpySE526I	ACGT	1 cut(s)	431
Hsp92II	CATG	1 cut(s)	352
Kzo9I	GATC	3 cut(s)	72, 168, 334
Lsp1109I	GCAGC	1 cut(s)	343
LweI	GCATC	2 cut(s)	16, 292
MaeII	ACGT	1 cut(s)	431
MaeIII	GTNAC	2 cut(s)	76, 401
MalI	GATC	3 cut(s)	74, 170, 336
MboI	GATC	3 cut(s)	72, 168, 334
MboII	GAAGA	1 cut(s)	329
MflI	RGATCY	2 cut(s)	168, 334
MhlI	GDGCHC	1 cut(s)	422
MluCI	AATT	3 cut(s)	6, 266, 363
MmeI	TCCRAC	2 cut(s)	196, 495
MnlI	CCTC	7 cut(s)	59, 177, 247, 280, 392, 433, 445
MseI	TTAA	1 cut(s)	102
MspA1I	CMGCKG	1 cut(s)	32
MspI	CCGG	1 cut(s)	435
MspR9I	CCNGG	1 cut(s)	436
Mva1269I	GAATGC	1 cut(s)	358
MwoI	GCNNNNNNNGC	3 cut(s)	353, 463, 488
NciI	CCSGG	1 cut(s)	436
NdeII	GATC	3 cut(s)	72, 168, 334
NlaIII	CATG	1 cut(s)	352
NmuCI	GTSAC	2 cut(s)	76, 401
PctI	GAATGC	1 cut(s)	358
PflFI	GACNNNGTC	1 cut(s)	399
PkrI	GCNGC	2 cut(s)	31, 358
PsuI	RGATCY	2 cut(s)	168, 334
PsyI	GACNNNGTC	1 cut(s)	399
RsaI	GTAC	2 cut(s)	122, 410
RsaNI	GTAC	2 cut(s)	121, 409
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	2 cut(s)	30, 357
Sau3AI	GATC	3 cut(s)	72, 168, 334
ScrFI	CCNGG	1 cut(s)	436
SduI	GDGCHC	1 cut(s)	422
SetI	ASST	6 cut(s)	60, 66, 137, 378, 425, 434
SfaNI	GCATC	2 cut(s)	16, 292
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	3 cut(s)	6, 266, 363
SsiI	CCGC	1 cut(s)	30
StyD4I	CCNGG	1 cut(s)	434
TaaI	ACNGT	3 cut(s)	115, 142, 245
TaiI	ACGT	1 cut(s)	434
TaqI	TCGA	1 cut(s)	24
TasI	AATT	3 cut(s)	6, 266, 363
TatI	WGTACW	1 cut(s)	120
TauI	GCSGC	1 cut(s)	32
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TscAI	CASTG	1 cut(s)	410
TseFI	GTSAC	2 cut(s)	76, 401
TseI	GCWGC	1 cut(s)	356
Tsp45I	GTSAC	2 cut(s)	76, 401
TspDTI	ATGAA	2 cut(s)	306, 365
TspRI	CASTG	1 cut(s)	410
Tth111I	GACNNNGTC	1 cut(s)	399
XapI	RAATTY	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.