Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0000844

Physical Location & Seq

Genomic Coordinates Forward (+)

34040878 .. 34043250

Gene Structure 2373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1280300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGCGTATTCTGATGGTGGGTCTCGATGCGGCTGGTAAGACTACCATCCTCTACAAGCTCAAGCTCGGCGAGATCGTCACCACCATTCCCACCATTGGATTCAATGTGGAGACTGTGGAATACAAGAACATCAGCTTTACTGTGTGGGATGTCGGGGGTCAGGACAAGATCCGACCTTTGTGGAGGCATTACTTCCAAAACACACAAGGACTTATCTTTGTGGTTGACAGCAACGATCGTGACCGTGTGGTGGAAGCCAGAGATGAGCTTCATAGAATGTTGAATGAGGATGAGTTGAGGGACGCTGTGCTTCTTGTATTTGCAAACAAGCAAGATCTTCCAAATGCCATGAATGCTGCTGAAATAACTGATAAGCTTGGCCTTCACTCCCTCCGTCAACGCCACTGGTATATCCAGAGCACATGCGCCACTTCTGGTGAAGGACTTTACGAGGGTCTTGACTGGCTCTCAAACAATATTGCAAACAAGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko05110 ko05134 map04072 map04144 map05110 map05134

Pfam Domains

Protein Families

Arf

Protein Analysis

165

Amino Acids

18.69

Weight (kDa)

5.55

Isoelectric Point (pI)

34.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	1 - 160	2.2e-78	ADP-ribosylation factor family
Roc	PF08477	2 - 112	6.2e-14	Ras of Complex, Roc, domain of DAPkinase
SRPRB	PF09439	2 - 126	1.1e-12	Signal recognition particle receptor beta subunit
Ras	PF00071	2 - 157	3.5e-12	Ras family
Gtr1_RagA	PF04670	2 - 124	1.2e-09	Gtr1/RagA G protein conserved region
G-alpha	PF00503	28 - 94	6.5e-10	G-protein alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14670 AT5G14670 AT5G14670
fragaria_vesca	FvH4_1g26580 FvH4_2g05330 FvH4_4g34150 FvH4_6g50940
malus_domestica	MD02G1178300.v1.1 MD05G1087900.v1.1 MD09G1288000.v1.1 MD13G1093800.v1.1 MD16G1095100.v1.1 MD17G1032200.v1.1 MD17G1280300.v1.1
prunus_persica	Prupe.1G251500_v2.0.a1 Prupe.1G251500_v2.0.a1 Prupe.1G251500_v2.0.a1 Prupe.3G005200_v2.0.a1 Prupe.3G005200_v2.0.a1 Prupe.3G005200_v2.0.a1 Prupe.6G229500_v2.0.a1 Prupe.6G229500_v2.0.a1 Prupe.8G134000_v2.0.a1
pyrus_communis	pycom02g14440 pycom05g08740 pycom09g19540 pycom16g08120 pycom17g27820
rosa_chinensis	RchiOBHm_Chr2g0106611 RchiOBHm_Chr2g0172341 RchiOBHm_Chr3g0486681 RchiOBHm_Chr4g0443661 RchiOBHm_Chr6g0255541
rosa_laevigata	RLG00000005904 RLG00000014832 RLG00000017521 RLG00000023067
rosa_multiflora	Rmu_co8483849.1_g000001 Rmu_sc0000261.1_g000013 Rmu_sc0000467.1_g000011 Rmu_sc0001426.1_g000018 Rmu_sc0002360.1_g000004 Rmu_sc0006202.1_g000005 Rmu_sc0006221.1_g000007
rosa_roxburghii	Rroxscaffold_2G00136970 Rroxscaffold_5G00384210 Rroxscaffold_6G00395670 Rroxscaffold_7G00209900
rosa_rugosa	Rorug02G0136700 Rorug02G0136800 Rorug03G0226500 Rorug03G0226600 Rorug03G0226700 Rorug05G0559300
rosa_samantha	Rh2BG198900 Rh2BG647400 Rh2CG614300 Rh2DG194100 Rh2DG662200 Rh4CG431500 Rh6AG077800 Rh6DG065500
rosa_wichuraiana	Rw2G014750 Rw2G052480 Rw3G024590 Rw4G034860 Rw6G006700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	29
AclWI	GGATC	1 cut(s)	163
AfiI	CCNNNNNNNGG	2 cut(s)	95, 250
AgsI	TTSAA	2 cut(s)	103, 283
AluBI	AGCT	5 cut(s)	58, 64, 135, 268, 376
AluI	AGCT	5 cut(s)	58, 64, 135, 268, 376
Alw21I	GWGCWC	1 cut(s)	422
Alw26I	GTCTC	2 cut(s)	26, 104
AlwI	GGATC	1 cut(s)	163
AoxI	GGCC	1 cut(s)	379
ApeKI	GCWGC	1 cut(s)	356
AspLEI	GCGC	1 cut(s)	428
AsuHPI	GGTGA	2 cut(s)	70, 449
Bbv12I	GWGCWC	1 cut(s)	422
BbvI	GCAGC	1 cut(s)	343
BccI	CCATC	2 cut(s)	7, 53
BcoDI	GTCTC	2 cut(s)	26, 104
BglII	AGATCT	1 cut(s)	334
BisI	GCNGC	2 cut(s)	30, 357
BlsI	GCNGC	2 cut(s)	31, 358
BmsI	GCATC	1 cut(s)	16
BpuEI	CTTGAG	1 cut(s)	44
BsaI	GGTCTC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 250
Bse1I	ACTGG	2 cut(s)	410, 467
BseGI	GGATG	3 cut(s)	45, 154, 295
BseLI	CCNNNNNNNGG	2 cut(s)	95, 250
BseNI	ACTGG	2 cut(s)	410, 467
BseXI	GCAGC	1 cut(s)	343
Bsh1285I	CGRYCG	1 cut(s)	238
BshFI	GGCC	1 cut(s)	381
BsiEI	CGRYCG	1 cut(s)	238
BsiHKAI	GWGCWC	1 cut(s)	422
BslFI	GGGAC	1 cut(s)	314
BslI	CCNNNNNNNGG	2 cut(s)	95, 250
BsmAI	GTCTC	2 cut(s)	26, 104
BsmFI	GGGAC	1 cut(s)	314
BsmI	GAATGC	1 cut(s)	358
BsnI	GGCC	1 cut(s)	381
Bso31I	GGTCTC	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	422
Bsp143I	GATC	4 cut(s)	72, 168, 235, 334
BspACI	CCGC	1 cut(s)	29
BspANI	GGCC	1 cut(s)	381
BspPI	GGATC	1 cut(s)	163
BspTNI	GGTCTC	1 cut(s)	26
BsrI	ACTGG	2 cut(s)	410, 467
BssMI	GATC	4 cut(s)	72, 168, 235, 334
Bst4CI	ACNGT	3 cut(s)	115, 142, 245
BstF5I	GGATG	3 cut(s)	45, 154, 295
BstHHI	GCGC	1 cut(s)	428
BstKTI	GATC	4 cut(s)	75, 171, 238, 337
BstMAI	GTCTC	2 cut(s)	26, 104
BstMBI	GATC	4 cut(s)	72, 168, 235, 334
BstMCI	CGRYCG	1 cut(s)	238
BstMWI	GCNNNNNNNGC	2 cut(s)	353, 488
BstNSI	RCATGY	1 cut(s)	426
BstV1I	GCAGC	1 cut(s)	343
BstX2I	RGATCY	2 cut(s)	168, 334
BstYI	RGATCY	2 cut(s)	168, 334
BsuRI	GGCC	1 cut(s)	381
BtsCI	GGATG	3 cut(s)	45, 154, 295
BtsIMutI	CAGTG	1 cut(s)	403
CfoI	GCGC	1 cut(s)	428
CseI	GACGC	1 cut(s)	311
CviAII	CATG	2 cut(s)	349, 423
CviJI	RGCY	9 cut(s)	32, 58, 64, 135, 257, 268, 376, 381, 466
CviKI_1	RGCY	9 cut(s)	32, 58, 64, 135, 257, 268, 376, 381, 466
DpnI	GATC	4 cut(s)	74, 170, 237, 336
DpnII	GATC	4 cut(s)	72, 168, 235, 334
Eco31I	GGTCTC	1 cut(s)	26
FaeI	CATG	2 cut(s)	352, 426
FaiI	YATR	5 cut(s)	273, 350, 411, 424, 493
FaqI	GGGAC	1 cut(s)	314
FatI	CATG	2 cut(s)	348, 422
Fnu4HI	GCNGC	2 cut(s)	30, 357
FokI	GGATG	3 cut(s)	32, 161, 302
Fsp4HI	GCNGC	2 cut(s)	30, 357
GlaI	GCGC	1 cut(s)	427
GluI	GCNGC	2 cut(s)	30, 357
HaeIII	GGCC	1 cut(s)	381
HgaI	GACGC	1 cut(s)	311
HhaI	GCGC	1 cut(s)	428
Hin1II	CATG	2 cut(s)	352, 426
Hin6I	GCGC	1 cut(s)	426
HinP1I	GCGC	1 cut(s)	426
HincII	GTYRAC	2 cut(s)	226, 398
HindII	GTYRAC	2 cut(s)	226, 398
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	1 cut(s)	99
HphI	GGTGA	2 cut(s)	70, 449
Hpy166II	GTNNAC	2 cut(s)	226, 398
Hpy188I	TCNGA	2 cut(s)	12, 173
Hpy188III	TCNNGA	5 cut(s)	23, 161, 239, 415, 458
Hpy8I	GTNNAC	2 cut(s)	226, 398
HpyAV	CCTTC	2 cut(s)	392, 434
HpyCH4III	ACNGT	3 cut(s)	115, 142, 245
HpyCH4V	TGCA	2 cut(s)	323, 482
HpyF10VI	GCNNNNNNNGC	2 cut(s)	353, 488
Hsp92II	CATG	2 cut(s)	352, 426
HspAI	GCGC	1 cut(s)	426
Kzo9I	GATC	4 cut(s)	72, 168, 235, 334
LpnPI	CCDG	7 cut(s)	18, 146, 271, 391, 420, 428, 448
Lsp1109I	GCAGC	1 cut(s)	343
LweI	GCATC	1 cut(s)	16
MaeIII	GTNAC	2 cut(s)	76, 239
MalI	GATC	4 cut(s)	74, 170, 237, 336
MboI	GATC	4 cut(s)	72, 168, 235, 334
MboII	GAAGA	1 cut(s)	329
MflI	RGATCY	2 cut(s)	168, 334
MhlI	GDGCHC	1 cut(s)	422
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	6 cut(s)	59, 177, 280, 291, 401, 445
Mva1269I	GAATGC	1 cut(s)	358
MwoI	GCNNNNNNNGC	2 cut(s)	353, 488
NdeII	GATC	4 cut(s)	72, 168, 235, 334
NlaIII	CATG	2 cut(s)	352, 426
NmeAIII	GCCGAG	1 cut(s)	45
NmuCI	GTSAC	2 cut(s)	76, 239
NspI	RCATGY	1 cut(s)	426
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PctI	GAATGC	1 cut(s)	358
PfeI	GAWTC	1 cut(s)	99
PkrI	GCNGC	2 cut(s)	31, 358
Ple19I	CGATCG	1 cut(s)	238
PsuI	RGATCY	2 cut(s)	168, 334
PvuI	CGATCG	1 cut(s)	238
SatI	GCNGC	2 cut(s)	30, 357
Sau3AI	GATC	4 cut(s)	72, 168, 235, 334
SduI	GDGCHC	1 cut(s)	422
SetI	ASST	6 cut(s)	60, 66, 137, 178, 270, 378
SfaNI	GCATC	1 cut(s)	16
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
SsiI	CCGC	1 cut(s)	29
SspI	AATATT	1 cut(s)	478
TaaI	ACNGT	3 cut(s)	115, 142, 245
TaqI	TCGA	1 cut(s)	24
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	1 cut(s)	99
TscAI	CASTG	1 cut(s)	410
TseFI	GTSAC	2 cut(s)	76, 239
TseI	GCWGC	1 cut(s)	356
Tsp45I	GTSAC	2 cut(s)	76, 239
TspDTI	ATGAA	2 cut(s)	260, 365
TspGWI	ACGGA	1 cut(s)	383
TspRI	CASTG	1 cut(s)	410
XceI	RCATGY	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.