RLG00000023067
ERF Family

Belongs to the small GTPase superfamily. Arf family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000844
Physical Location & Seq
Forward (+)
17635738 .. 17638483
2746 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023067

Sequence Viewer

Length: 696 bp
ATGGCACCACCATCATCAGAACTAAATTGCAACATCAGTTTTGGCGTACGTATCGGTGTCAAGGACAGCTCCTCTCCTCTCTTCTTAGACGCGCATACACAGAGCGGAAGAGGCGTAGATCTCAAATTCCTCTCTTCCTCAGGTGAAAAAATGGGGCTGTCTTTCACCAAGCTTTTCAGTCGTCTCTTTGCCAAGAAAGAGATGCGTATACTCATGGTCGGTCTCGATGCCGCTGGTAAGACCACCATTCTCTACAAGCTCAAGCTCGGCGAGATCGTCACCACCATTCCCACTATTGGATTCAATGTGGAGACTGTGGAATATAAGAACATCAGCTTTACTGTCTGGGATGTTGGGGGTCAGGACAAGATTCGACCCTTGTGGAGGCACTACTTCCAAAATACACAAGGACTTATCTTTGTGGTTGATAGCAACGATCGTGACCGTGTAGTTGAAGCTAGGGATGAGCTGCACAGAATGTTGAATGAGGATGAGTTGAGGGAAGCTGTGCTGCTTGTATTTGCTAACAAGCAAGATCTTCCAAATGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGCCTTCACTCCCTCCGTCAACGCCACTGGTATATCCAGAGCACATGTGCTACTTCTGGTGAAGGACTGTATGAGGGACTAGACTGGCTTTCAAACAACATTGCAAACAAGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04072 ko04144 ko05110 ko05134 map04072 map04144 map05110 map05134
Pfam Domains
Protein Families
Arf

Protein Analysis

232

Amino Acids

25.94

Weight (kDa)

6.53

Isoelectric Point (pI)

40.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 55 - 227 3.1e-81 ADP-ribosylation factor family
SRPRB PF09439 66 - 193 1.2e-12 Signal recognition particle receptor beta subunit
Roc PF08477 69 - 179 1.6e-13 Ras of Complex, Roc, domain of DAPkinase
Ras PF00071 69 - 223 1.3e-11 Ras family
Gtr1_RagA PF04670 69 - 190 3.3e-09 Gtr1/RagA G protein conserved region
G-alpha PF00503 95 - 161 1.3e-09 G-protein alpha subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccBSI CCGCTC 1 cut(s) 105
AccI GTMKAC 1 cut(s) 208
AccII CGCG 1 cut(s) 92
AciI CCGC 2 cut(s) 105, 231
AcsI RAATTY 1 cut(s) 125
AfaI GTAC 1 cut(s) 48
AfiI CCNNNNNNNGG 2 cut(s) 296, 384
AflIII ACRYGT 1 cut(s) 623
AgsI TTSAA 4 cut(s) 304, 455, 484, 672
AluBI AGCT 9 cut(s) 69, 172, 259, 265, 336, 458, 469, 506, 577
AluI AGCT 9 cut(s) 69, 172, 259, 265, 336, 458, 469, 506, 577
Alw21I GWGCWC 1 cut(s) 623
Alw26I GTCTC 3 cut(s) 188, 227, 305
AoxI GGCC 1 cut(s) 580
ApeKI GCWGC 3 cut(s) 469, 511, 557
ApoI RAATTY 1 cut(s) 125
AspLEI GCGC 1 cut(s) 94
AsuHPI GGTGA 4 cut(s) 155, 157, 271, 650
AxyI CCTNAGG 1 cut(s) 139
BanI GGYRCC 1 cut(s) 4
Bbv12I GWGCWC 1 cut(s) 623
BbvI GCAGC 3 cut(s) 456, 498, 544
BccI CCATC 1 cut(s) 19
BcoDI GTCTC 3 cut(s) 188, 227, 305
BfaI CTAG 2 cut(s) 459, 659
BglII AGATCT 2 cut(s) 118, 535
BisI GCNGC 4 cut(s) 231, 470, 512, 558
BlsI GCNGC 4 cut(s) 232, 471, 513, 559
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 2 cut(s) 192, 217
BpuEI CTTGAG 1 cut(s) 245
BsaAI YACGTR 1 cut(s) 50
BsaI GGTCTC 1 cut(s) 227
Bsc4I CCNNNNNNNGG 2 cut(s) 296, 384
Bse1I ACTGG 2 cut(s) 611, 668
Bse21I CCTNAGG 1 cut(s) 139
Bse3DI GCAATG 2 cut(s) 555, 678
BseGI GGATG 3 cut(s) 355, 469, 496
BseLI CCNNNNNNNGG 2 cut(s) 296, 384
BseMI GCAATG 2 cut(s) 555, 678
BseMII CTCAG 1 cut(s) 153
BseNI ACTGG 2 cut(s) 611, 668
BseRI GAGGAG 2 cut(s) 61, 66
BseXI GCAGC 3 cut(s) 456, 498, 544
BsgI GTGCAG 1 cut(s) 455
Bsh1236I CGCG 1 cut(s) 92
Bsh1285I CGRYCG 1 cut(s) 439
BshFI GGCC 1 cut(s) 582
BshNI GGYRCC 1 cut(s) 4
BsiEI CGRYCG 1 cut(s) 439
BsiHKAI GWGCWC 1 cut(s) 623
BsiWI CGTACG 1 cut(s) 46
BslFI GGGAC 1 cut(s) 669
BslI CCNNNNNNNGG 2 cut(s) 296, 384
BsmAI GTCTC 3 cut(s) 188, 227, 305
BsmBI CGTCTC 1 cut(s) 188
BsmFI GGGAC 1 cut(s) 669
BsmI GAATGC 1 cut(s) 559
BsnI GGCC 1 cut(s) 582
Bso31I GGTCTC 1 cut(s) 227
Bsp1286I GDGCHC 1 cut(s) 623
Bsp143I GATC 4 cut(s) 118, 273, 436, 535
BspACI CCGC 2 cut(s) 105, 231
BspANI GGCC 1 cut(s) 582
BspCNI CTCAG 1 cut(s) 152
BspFNI CGCG 1 cut(s) 92
BspLI GGNNCC 1 cut(s) 6
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 227
BsrBI CCGCTC 1 cut(s) 105
BsrDI GCAATG 2 cut(s) 555, 678
BsrI ACTGG 2 cut(s) 611, 668
BssMI GATC 4 cut(s) 118, 273, 436, 535
BssNAI GTATAC 1 cut(s) 209
Bst1107I GTATAC 1 cut(s) 209
Bst4CI ACNGT 4 cut(s) 316, 343, 446, 648
Bst6I CTCTTC 3 cut(s) 86, 103, 139
BstAPI GCANNNNNTGC 1 cut(s) 554
BstBAI YACGTR 1 cut(s) 50
BstDEI CTNAG 3 cut(s) 85, 139, 693
BstENI CCTNNNNNAGG 1 cut(s) 382
BstF5I GGATG 3 cut(s) 355, 469, 496
BstFNI CGCG 1 cut(s) 92
BstHHI GCGC 1 cut(s) 94
BstKTI GATC 4 cut(s) 121, 276, 439, 538
BstMAI GTCTC 3 cut(s) 188, 227, 305
BstMBI GATC 4 cut(s) 118, 273, 436, 535
BstMCI CGRYCG 1 cut(s) 439
BstMWI GCNNNNNNNGC 3 cut(s) 111, 554, 689
BstNSI RCATGY 1 cut(s) 627
BstSNI TACGTA 1 cut(s) 50
BstUI CGCG 1 cut(s) 92
BstV1I GCAGC 3 cut(s) 456, 498, 544
BstX2I RGATCY 2 cut(s) 118, 535
BstYI RGATCY 2 cut(s) 118, 535
BstZ17I GTATAC 1 cut(s) 209
Bsu36I CCTNAGG 1 cut(s) 139
BsuRI GGCC 1 cut(s) 582
BtsCI GGATG 3 cut(s) 355, 469, 496
BtsIMutI CAGTG 1 cut(s) 604
CfoI GCGC 1 cut(s) 94
CseI GACGC 1 cut(s) 98
Csp6I GTAC 1 cut(s) 47
CviAII CATG 2 cut(s) 214, 624
CviQI GTAC 1 cut(s) 47
DdeI CTNAG 3 cut(s) 85, 139, 693
DpnI GATC 4 cut(s) 120, 275, 438, 537
DpnII GATC 4 cut(s) 118, 273, 436, 535
Eam1104I CTCTTC 3 cut(s) 86, 103, 139
EarI CTCTTC 3 cut(s) 86, 103, 139
Eco105I TACGTA 1 cut(s) 50
Eco31I GGTCTC 1 cut(s) 227
Eco81I CCTNAGG 1 cut(s) 139
EcoNI CCTNNNNNAGG 1 cut(s) 382
Esp3I CGTCTC 1 cut(s) 188
FaeI CATG 2 cut(s) 217, 627
FaiI YATR 7 cut(s) 96, 209, 215, 324, 612, 625, 651
FaqI GGGAC 1 cut(s) 669
FatI CATG 2 cut(s) 213, 623
FblI GTMKAC 1 cut(s) 208
Fnu4HI GCNGC 4 cut(s) 231, 470, 512, 558
FokI GGATG 3 cut(s) 362, 476, 503
Fsp4HI GCNGC 4 cut(s) 231, 470, 512, 558
FspBI CTAG 2 cut(s) 459, 659
GlaI GCGC 1 cut(s) 93
GluI GCNGC 4 cut(s) 231, 470, 512, 558
HaeIII GGCC 1 cut(s) 582
HgaI GACGC 1 cut(s) 98
HhaI GCGC 1 cut(s) 94
Hin1II CATG 2 cut(s) 217, 627
Hin6I GCGC 1 cut(s) 92
HinP1I GCGC 1 cut(s) 92
HincII GTYRAC 1 cut(s) 599
HindII GTYRAC 1 cut(s) 599
HindIII AAGCTT 2 cut(s) 170, 575
HinfI GANTC 2 cut(s) 300, 370
HphI GGTGA 4 cut(s) 155, 157, 271, 650
Hpy166II GTNNAC 2 cut(s) 209, 599
Hpy188I TCNGA 1 cut(s) 19
Hpy188III TCNNGA 4 cut(s) 224, 362, 440, 616
Hpy8I GTNNAC 2 cut(s) 209, 599
HpyAV CCTTC 2 cut(s) 593, 635
HpyCH4III ACNGT 4 cut(s) 316, 343, 446, 648
HpyCH4IV ACGT 1 cut(s) 49
HpyCH4V TGCA 4 cut(s) 30, 472, 548, 683
HpyF10VI GCNNNNNNNGC 3 cut(s) 111, 554, 689
HpyF3I CTNAG 3 cut(s) 85, 139, 693
HpySE526I ACGT 1 cut(s) 49
Hsp92II CATG 2 cut(s) 217, 627
HspAI GCGC 1 cut(s) 92
Kzo9I GATC 4 cut(s) 118, 273, 436, 535
LmnI GCTCC 1 cut(s) 74
LpnPI CCDG 8 cut(s) 126, 219, 331, 347, 592, 621, 629, 649
Lsp1109I GCAGC 3 cut(s) 456, 498, 544
LweI GCATC 2 cut(s) 192, 217
MaeI CTAG 2 cut(s) 459, 659
MaeII ACGT 1 cut(s) 49
MaeIII GTNAC 2 cut(s) 277, 440
MalI GATC 4 cut(s) 120, 275, 438, 537
MbiI CCGCTC 1 cut(s) 105
MboI GATC 4 cut(s) 118, 273, 436, 535
MboII GAAGA 4 cut(s) 73, 120, 126, 530
MflI RGATCY 2 cut(s) 118, 535
MhlI GDGCHC 1 cut(s) 623
MluCI AATT 2 cut(s) 25, 125
MspA1I CMGCKG 1 cut(s) 233
Mva1269I GAATGC 1 cut(s) 559
MvnI CGCG 1 cut(s) 92
MwoI GCNNNNNNNGC 3 cut(s) 111, 554, 689
NdeII GATC 4 cut(s) 118, 273, 436, 535
NlaIII CATG 2 cut(s) 217, 627
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 246
NmuCI GTSAC 2 cut(s) 277, 440
NspI RCATGY 1 cut(s) 627
PciI ACATGT 1 cut(s) 623
PcsI WCGNNNNNNNCGW 1 cut(s) 273
PctI GAATGC 1 cut(s) 559
PfeI GAWTC 2 cut(s) 300, 370
Pfl23II CGTACG 1 cut(s) 46
PkrI GCNGC 4 cut(s) 232, 471, 513, 559
Ple19I CGATCG 1 cut(s) 439
Ppu21I YACGTR 1 cut(s) 50
PscI ACATGT 1 cut(s) 623
PspLI CGTACG 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 2 cut(s) 118, 535
PvuI CGATCG 1 cut(s) 439
RsaI GTAC 1 cut(s) 48
RsaNI GTAC 1 cut(s) 47
SatI GCNGC 4 cut(s) 231, 470, 512, 558
Sau3AI GATC 4 cut(s) 118, 273, 436, 535
SduI GDGCHC 1 cut(s) 623
SfaNI GCATC 2 cut(s) 192, 217
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
SnaBI TACGTA 1 cut(s) 50
Sse9I AATT 2 cut(s) 25, 125
SsiI CCGC 2 cut(s) 105, 231
SspMI CTAG 2 cut(s) 459, 659
TaaI ACNGT 4 cut(s) 316, 343, 446, 648
TaiI ACGT 1 cut(s) 52
TaqI TCGA 2 cut(s) 225, 373
TaqII GACCGA 1 cut(s) 209
TasI AATT 2 cut(s) 25, 125
TauI GCSGC 1 cut(s) 233
TfiI GAWTC 2 cut(s) 300, 370
TscAI CASTG 1 cut(s) 611
TseFI GTSAC 2 cut(s) 277, 440
TseI GCWGC 3 cut(s) 469, 511, 557
Tsp45I GTSAC 2 cut(s) 277, 440
TspDTI ATGAA 1 cut(s) 566
TspGWI ACGGA 1 cut(s) 584
TspRI CASTG 1 cut(s) 611
XagI CCTNNNNNAGG 1 cut(s) 382
XapI RAATTY 1 cut(s) 125
XceI RCATGY 1 cut(s) 627
XmiI GTMKAC 1 cut(s) 208
XspI CTAG 2 cut(s) 459, 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.