FvH4_5g06361

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0003949
Physical Location & Seq
Reverse (-)
3736166 .. 3736534
369 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g06361.t1

Sequence Viewer

Length: 369 bp
ATGGCCACACGAACTCCACGTCACCCAAATGTTGTCCACGTGTTAGGCTTGAAGATTCGCCACACGTGCGGGGACGTGTTGAGATATATATCCCACATCGGGAATATGAGACCTTGCCTGTGGGTTAATAAGAGTTTGGGCCACTCCACCCATTGCCAATTGGTTTTGGATGTGAACCCCATACTACTTTATCACTGTGAGAAGATGGATCAGAGTGGCAGGGGCAAAGGTTTTGCATCAGTTGGTCTGTTGACTGGGATGGTTGGATTTGACAACGGTTTTAAAGAGCTGAGGTTTTCGGAGAGTTTTCTGAAGAAAGGGATGGATTTGATGGATGAACCAAAGCGTGCGGAGCTGAATGGTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.76

Weight (kDa)

9.24

Isoelectric Point (pI)

29.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 69, 350
AclWI GGATC 1 cut(s) 216
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 332
AcvI CACGTG 2 cut(s) 40, 66
AfiI CCNNNNNNNGG 1 cut(s) 99
AflIII ACRYGT 3 cut(s) 39, 63, 75
AgsI TTSAA 1 cut(s) 52
AjiI CACGTC 2 cut(s) 20, 76
AluBI AGCT 2 cut(s) 289, 355
AluI AGCT 2 cut(s) 289, 355
Alw26I GTCTC 1 cut(s) 103
AlwI GGATC 1 cut(s) 216
AoxI GGCC 2 cut(s) 3, 139
ArsI GACNNNNNNTTYG 1 cut(s) 36
AspS9I GGNCC 1 cut(s) 139
AsuHPI GGTGA 1 cut(s) 14
BalI TGGCCA 1 cut(s) 5
BbrPI CACGTG 2 cut(s) 40, 66
BbvCI CCTCAGC 1 cut(s) 290
BccI CCATC 4 cut(s) 199, 253, 316, 325
BcoDI GTCTC 1 cut(s) 103
BmgBI CACGTC 2 cut(s) 20, 76
BmgT120I GGNCC 1 cut(s) 139
BmrI ACTGGG 1 cut(s) 264
BmsI GCATC 1 cut(s) 245
BmuI ACTGGG 1 cut(s) 264
Bpu10I CCTNAGC 1 cut(s) 290
BsaAI YACGTR 2 cut(s) 40, 66
BsaBI GATNNNNATC 1 cut(s) 88
BsaI GGTCTC 1 cut(s) 103
BsaXI ACNNNNNCTCC 1 cut(s) 28
Bsc4I CCNNNNNNNGG 1 cut(s) 99
Bse1I ACTGG 1 cut(s) 259
Bse3DI GCAATG 1 cut(s) 151
Bse8I GATNNNNATC 1 cut(s) 88
BseGI GGATG 4 cut(s) 175, 264, 327, 340
BseJI GATNNNNATC 1 cut(s) 88
BseLI CCNNNNNNNGG 1 cut(s) 99
BseMI GCAATG 1 cut(s) 151
BseMII CTCAG 1 cut(s) 281
BseNI ACTGG 1 cut(s) 259
BshFI GGCC 2 cut(s) 5, 141
BslFI GGGAC 1 cut(s) 86
BslI CCNNNNNNNGG 1 cut(s) 99
BsmAI GTCTC 1 cut(s) 103
BsmFI GGGAC 1 cut(s) 86
BsnI GGCC 2 cut(s) 5, 141
Bso31I GGTCTC 1 cut(s) 103
Bsp143I GATC 1 cut(s) 208
BspACI CCGC 2 cut(s) 69, 350
BspANI GGCC 2 cut(s) 5, 141
BspCNI CTCAG 1 cut(s) 282
BspPI GGATC 1 cut(s) 216
BspTNI GGTCTC 1 cut(s) 103
BsrDI GCAATG 1 cut(s) 151
BsrI ACTGG 1 cut(s) 259
BssMI GATC 1 cut(s) 208
Bst4CI ACNGT 2 cut(s) 197, 278
BstBAI YACGTR 2 cut(s) 40, 66
BstC8I GCNNGC 1 cut(s) 348
BstDEI CTNAG 1 cut(s) 290
BstF5I GGATG 4 cut(s) 175, 264, 327, 340
BstKTI GATC 1 cut(s) 211
BstMAI GTCTC 1 cut(s) 103
BstMBI GATC 1 cut(s) 208
BstMWI GCNNNNNNNGC 2 cut(s) 66, 352
BsuRI GGCC 2 cut(s) 5, 141
BtrI CACGTC 2 cut(s) 20, 76
BtsCI GGATG 4 cut(s) 175, 264, 327, 340
BtsIMutI CAGTG 1 cut(s) 193
Cac8I GCNNGC 1 cut(s) 348
Cfr13I GGNCC 1 cut(s) 139
CviJI RGCY 5 cut(s) 5, 48, 141, 289, 355
CviKI_1 RGCY 5 cut(s) 5, 48, 141, 289, 355
DdeI CTNAG 1 cut(s) 290
DpnI GATC 1 cut(s) 210
DpnII GATC 1 cut(s) 208
DraI TTTAAA 1 cut(s) 283
EaeI YGGCCR 1 cut(s) 3
Eco31I GGTCTC 1 cut(s) 103
Eco57I CTGAAG 1 cut(s) 332
Eco72I CACGTG 2 cut(s) 40, 66
FaiI YATR 4 cut(s) 87, 89, 107, 182
FaqI GGGAC 1 cut(s) 86
FauI CCCGC 1 cut(s) 62
FokI GGATG 4 cut(s) 182, 271, 334, 347
HaeIII GGCC 2 cut(s) 5, 141
HincII GTYRAC 1 cut(s) 252
HindII GTYRAC 1 cut(s) 252
HinfI GANTC 1 cut(s) 55
HphI GGTGA 1 cut(s) 14
Hpy166II GTNNAC 3 cut(s) 37, 175, 252
Hpy188I TCNGA 3 cut(s) 213, 301, 312
Hpy188III TCNNGA 1 cut(s) 100
Hpy8I GTNNAC 3 cut(s) 37, 175, 252
HpyCH4III ACNGT 2 cut(s) 197, 278
HpyCH4IV ACGT 4 cut(s) 19, 39, 65, 75
HpyCH4V TGCA 1 cut(s) 236
HpyF10VI GCNNNNNNNGC 2 cut(s) 66, 352
HpyF3I CTNAG 1 cut(s) 290
HpySE526I ACGT 4 cut(s) 19, 39, 65, 75
Kzo9I GATC 1 cut(s) 208
LmnI GCTCC 1 cut(s) 352
LpnPI CCDG 3 cut(s) 131, 205, 240
LweI GCATC 1 cut(s) 245
MaeII ACGT 4 cut(s) 19, 39, 65, 75
MaeIII GTNAC 1 cut(s) 20
MalI GATC 1 cut(s) 210
MboI GATC 1 cut(s) 208
MboII GAAGA 3 cut(s) 64, 214, 325
MfeI CAATTG 1 cut(s) 158
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 158
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 1 cut(s) 285
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 126, 282
MslI CAYNNNNRTG 1 cut(s) 27
Msp20I TGGCCA 1 cut(s) 5
MunI CAATTG 1 cut(s) 158
MwoI GCNNNNNNNGC 2 cut(s) 66, 352
NdeII GATC 1 cut(s) 208
NmuCI GTSAC 1 cut(s) 20
PcsI WCGNNNNNNNCGW 1 cut(s) 16
PfeI GAWTC 1 cut(s) 55
PmaCI CACGTG 2 cut(s) 40, 66
PmlI CACGTG 2 cut(s) 40, 66
Ppu21I YACGTR 2 cut(s) 40, 66
PspCI CACGTG 2 cut(s) 40, 66
PspPI GGNCC 1 cut(s) 139
RseI CAYNNNNRTG 1 cut(s) 27
SaqAI TTAA 2 cut(s) 126, 282
Sau3AI GATC 1 cut(s) 208
Sau96I GGNCC 1 cut(s) 139
SetI ASST 9 cut(s) 22, 42, 68, 78, 115, 232, 291, 296, 357
SfaNI GCATC 1 cut(s) 245
SmiMI CAYNNNNRTG 1 cut(s) 27
Sse9I AATT 1 cut(s) 158
SsiI CCGC 2 cut(s) 69, 350
TaaI ACNGT 2 cut(s) 197, 278
TaiI ACGT 4 cut(s) 22, 42, 68, 78
TasI AATT 1 cut(s) 158
TfiI GAWTC 1 cut(s) 55
Tru1I TTAA 2 cut(s) 126, 282
Tru9I TTAA 2 cut(s) 126, 282
TscAI CASTG 1 cut(s) 200
TseFI GTSAC 1 cut(s) 20
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 1 cut(s) 351
TspRI CASTG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.