Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003949

Physical Location & Seq

Genomic Coordinates Forward (+)

47358089 .. 47366281

Gene Structure 8193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00032950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCCAAGGCTTGTGGTTGTGAATTGAGAATCTGCGGTGTTTCACAAATCGGGATGGTGGATCAAAAAGGGACTTTCGGATGTGATCTTGGAAGTGTGATGTTAGAATCCAATGTCCATCTTTCCGGCACAAAGAAGAGGAAAGGAGGGGCTCGAGCTGCGCGGTGGATTGAAGGAATGGGAAAGTTGATGGGAAGCCCGTTGAGGTTGCCCGAGAATGAGAAGTTTGAAAAGGACGACCAGGATAACTTGGTTTTGGAAGCTGCTGGAGATCATCATACCCGGCCACCATTTCTTTTCAGGCCACTTGTTTTGGGTAATCTCCGTACCCTTTTGGCAATCATTCATCATGCAGACACTTTCGTCGGTTACTTGACATCCGAAGGTGTTGCTACTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010035 GO:0010038 GO:0010043 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_2

Protein Analysis

133

Amino Acids

14.41

Weight (kDa)

7.73

Isoelectric Point (pI)

41.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003949)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g06361
malus_domestica	MD08G1226000.v1.1
pyrus_communis	pycom05g24160
rosa_chinensis	RchiOBHm_Chr2g0159691 RchiOBHm_Chr2g0168161 RchiOBHm_Chr4g0433811 RchiOBHm_Chr5g0018671 RchiOBHm_Chr5g0082331
rosa_multiflora	Rmu_sc0000698.1_g000050
rosa_roxburghii	Rroxscaffold_1G00019890 Rroxscaffold_1G00030050 Rroxscaffold_1G00032950 Rroxscaffold_5G00335810 Rroxscaffold_5G00345660 Rroxscaffold_5G00345670 Rroxscaffold_6G00401880 Rroxscaffold_6G00401890 Rroxscaffold_7G00194550
rosa_rugosa	Rorug04G0046200 Rorug04G0124800 Rorug04G0335500 Rorug04G0429300 Rorug05G0081300 Rorug05G0117900 Rorug05G0181600 Rorug05G0438900 Rorug05G0452900 Rorug05G0506200.1 Rorug06G0093700 Rorug06G0458300 Rorug07G0106200 Rorug07G0121100
rosa_samantha	Rh2DG566900 Rh3CG025900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	362
AccII	CGCG	1 cut(s)	163
AciI	CCGC	2 cut(s)	36, 163
AclWI	GGATC	1 cut(s)	69
AcoI	YGGCCR	2 cut(s)	3, 284
AfaI	GTAC	1 cut(s)	328
AgsI	TTSAA	2 cut(s)	173, 230
AjnI	CCWGG	1 cut(s)	240
AluBI	AGCT	2 cut(s)	158, 263
AluI	AGCT	2 cut(s)	158, 263
AlwI	GGATC	1 cut(s)	69
Ama87I	CYCGRG	2 cut(s)	153, 212
AoxI	GGCC	3 cut(s)	3, 284, 302
ApeKI	GCWGC	2 cut(s)	158, 263
AspLEI	GCGC	1 cut(s)	163
AsuC2I	CCSGG	1 cut(s)	283
AvaI	CYCGRG	2 cut(s)	153, 212
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	154
BbvI	GCAGC	2 cut(s)	145, 250
BccI	CCATC	3 cut(s)	49, 126, 184
BcgI	CGANNNNNNTGC	1 cut(s)	371
BciT130I	CCWGG	1 cut(s)	242
BcnI	CCSGG	1 cut(s)	283
BisI	GCNGC	2 cut(s)	159, 264
BlsI	GCNGC	2 cut(s)	160, 265
Bme1390I	CCNGG	2 cut(s)	242, 283
BmeT110I	CYCGRG	2 cut(s)	153, 212
BmrFI	CCNGG	2 cut(s)	242, 283
BpmI	CTGGAG	1 cut(s)	288
BpuMI	CCSGG	1 cut(s)	283
BsaJI	CCNNGG	1 cut(s)	6
BseBI	CCWGG	1 cut(s)	242
BseDI	CCNNGG	1 cut(s)	6
BseGI	GGATG	3 cut(s)	60, 86, 377
BseXI	GCAGC	2 cut(s)	145, 250
Bsh1236I	CGCG	1 cut(s)	163
BshFI	GGCC	3 cut(s)	5, 286, 304
BsiHKCI	CYCGRG	2 cut(s)	153, 212
BsiSI	CCGG	2 cut(s)	126, 283
BslFI	GGGAC	1 cut(s)	85
BsmFI	GGGAC	1 cut(s)	85
BsnI	GGCC	3 cut(s)	5, 286, 304
BsoBI	CYCGRG	2 cut(s)	153, 212
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp143I	GATC	3 cut(s)	61, 85, 271
BspACI	CCGC	2 cut(s)	36, 163
BspANI	GGCC	3 cut(s)	5, 286, 304
BspFNI	CGCG	1 cut(s)	163
BspPI	GGATC	1 cut(s)	69
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	3 cut(s)	61, 85, 271
BssT1I	CCWWGG	1 cut(s)	6
Bst2UI	CCWGG	1 cut(s)	242
Bst6I	CTCTTC	1 cut(s)	131
BstF5I	GGATG	3 cut(s)	60, 86, 377
BstFNI	CGCG	1 cut(s)	163
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	3 cut(s)	64, 88, 274
BstMBI	GATC	3 cut(s)	61, 85, 271
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNI	CCWGG	1 cut(s)	242
BstSCI	CCNGG	2 cut(s)	240, 281
BstUI	CGCG	1 cut(s)	163
BstV1I	GCAGC	2 cut(s)	145, 250
BsuRI	GGCC	3 cut(s)	5, 286, 304
BtsCI	GGATG	3 cut(s)	60, 86, 377
CfoI	GCGC	1 cut(s)	163
Csp6I	GTAC	1 cut(s)	327
CspCI	CAANNNNNGTGG	3 cut(s)	30, 294, 329
CviAII	CATG	1 cut(s)	350
CviJI	RGCY	8 cut(s)	5, 11, 152, 158, 198, 263, 286, 304
CviKI_1	RGCY	8 cut(s)	5, 11, 152, 158, 198, 263, 286, 304
CviQI	GTAC	1 cut(s)	327
DpnI	GATC	3 cut(s)	63, 87, 273
DpnII	GATC	3 cut(s)	61, 85, 271
DrdI	GACNNNNNNGTC	1 cut(s)	362
DseDI	GACNNNNNNGTC	1 cut(s)	362
EaeI	YGGCCR	2 cut(s)	3, 284
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
Eco130I	CCWWGG	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	154
Eco88I	CYCGRG	2 cut(s)	153, 212
EcoRII	CCWGG	1 cut(s)	240
EcoT14I	CCWWGG	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	154
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	1 cut(s)	353
FaiI	YATR	3 cut(s)	279, 351, 400
FaqI	GGGAC	1 cut(s)	85
FatI	CATG	1 cut(s)	349
Fnu4HI	GCNGC	2 cut(s)	159, 264
FokI	GGATG	3 cut(s)	67, 93, 364
FriOI	GRGCYC	1 cut(s)	154
Fsp4HI	GCNGC	2 cut(s)	159, 264
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	2 cut(s)	159, 264
GsuI	CTGGAG	1 cut(s)	288
HaeIII	GGCC	3 cut(s)	5, 286, 304
HapII	CCGG	2 cut(s)	126, 283
HhaI	GCGC	1 cut(s)	163
Hin1II	CATG	1 cut(s)	353
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HinfI	GANTC	2 cut(s)	30, 107
HpaII	CCGG	2 cut(s)	126, 283
Hpy188I	TCNGA	2 cut(s)	80, 382
Hpy188III	TCNNGA	1 cut(s)	52
Hpy99I	CGWCG	1 cut(s)	368
HpyAV	CCTTC	2 cut(s)	167, 377
HpyCH4V	TGCA	1 cut(s)	353
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
Hsp92II	CATG	1 cut(s)	353
HspAI	GCGC	1 cut(s)	161
Kzo9I	GATC	3 cut(s)	61, 85, 271
LpnPI	CCDG	6 cut(s)	139, 227, 252, 254, 286, 296
Lsp1109I	GCAGC	2 cut(s)	145, 250
MaeIII	GTNAC	1 cut(s)	368
MalI	GATC	3 cut(s)	63, 87, 273
MboI	GATC	3 cut(s)	61, 85, 271
MboII	GAAGA	1 cut(s)	148
MhlI	GDGCHC	1 cut(s)	154
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	23
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	3 cut(s)	132, 140, 198
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	126, 283
MspR9I	CCNGG	2 cut(s)	242, 283
MvaI	CCWGG	1 cut(s)	242
MvnI	CGCG	1 cut(s)	163
MwoI	GCNNNNNNNGC	1 cut(s)	158
NciI	CCSGG	1 cut(s)	283
NdeII	GATC	3 cut(s)	61, 85, 271
NlaIII	CATG	1 cut(s)	353
PaeR7I	CTCGAG	1 cut(s)	153
PfeI	GAWTC	2 cut(s)	30, 107
PkrI	GCNGC	2 cut(s)	160, 265
Psp6I	CCWGG	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	240
PspXI	VCTCGAGB	1 cut(s)	153
RsaI	GTAC	1 cut(s)	328
RsaNI	GTAC	1 cut(s)	327
SatI	GCNGC	2 cut(s)	159, 264
Sau3AI	GATC	3 cut(s)	61, 85, 271
ScrFI	CCNGG	2 cut(s)	242, 283
SduI	GDGCHC	1 cut(s)	154
SetI	ASST	4 cut(s)	160, 209, 265, 388
Sfr274I	CTCGAG	1 cut(s)	153
SlaI	CTCGAG	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	153
SmoI	CTYRAG	1 cut(s)	153
Sse9I	AATT	1 cut(s)	23
SsiI	CCGC	2 cut(s)	36, 163
StyD4I	CCNGG	2 cut(s)	240, 281
StyI	CCWWGG	1 cut(s)	6
TaqI	TCGA	1 cut(s)	154
TasI	AATT	1 cut(s)	23
TfiI	GAWTC	2 cut(s)	30, 107
TseI	GCWGC	2 cut(s)	158, 263
TspDTI	ATGAA	2 cut(s)	335, 387
TspGWI	ACGGA	1 cut(s)	314
XhoI	CTCGAG	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.